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(Created page with "{{f5samples |id=FF:10813-111B3 |name=normal embryonic palatal mesenchymal cell line:HEPM, biol_rep1 |sample_id=10813 |rna_tube_id=111B3 |rna_box=111 |rna_position=B3 |s...")
 
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{{f5samples
{{f5samples
|id=FF:10813-111B3
|DRA_sample_Accession=CAGE@SAMD00004738
|name=normal embryonic palatal mesenchymal cell line:HEPM, biol_rep1
|accession_numbers=CAGE;DRX007970;DRR008842;DRZ000267;DRZ001652;DRZ011617;DRZ013002
|sample_id=10813
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001474,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0005705,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0004765,UBERON:0008193,UBERON:0001708,UBERON:0010912,UBERON:0011159,UBERON:0002514,UBERON:0003457,UBERON:0008907,UBERON:0008001,UBERON:0007213,UBERON:0009891,UBERON:0003104,UBERON:0007914,UBERON:0010317,UBERON:0007375,UBERON:0003323,UBERON:0010258,UBERON:0005253,UBERON:0007842,UBERON:0004089,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0001456,UBERON:0008895,UBERON:0002397,UBERON:0003113,UBERON:0011137,UBERON:0003277,UBERON:0009142,UBERON:0010323,UBERON:0001709,UBERON:0002244,UBERON:0005620,UBERON:0010364,UBERON:0004288
|rna_tube_id=111B3
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
|rna_box=111
|rna_position=B3
|sample_cell_lot=
|sample_cell_catalog=jcrb9095
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=palate
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=1.59000
|rna_od260/280=2.04000
|sample_cell_type=unclassifiable
|sample_cell_line=HEPM
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=14.73552
|rna_concentration=0.54576
|sample_note=
|profile_hcage=CNhs11894,LSID830,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000075,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001444,UBERON:0001456,UBERON:0001474,UBERON:0001704,UBERON:0001708,UBERON:0001709,UBERON:0002050,UBERON:0002090,UBERON:0002204,UBERON:0002244,UBERON:0002329,UBERON:0002342,UBERON:0002346,UBERON:0002384,UBERON:0002397,UBERON:0002514,UBERON:0002532,UBERON:0002539,UBERON:0003059,UBERON:0003075,UBERON:0003077,UBERON:0003089,UBERON:0003104,UBERON:0003129,UBERON:0003323,UBERON:0003457,UBERON:0003462,UBERON:0004066,UBERON:0004068,UBERON:0004089,UBERON:0004120,UBERON:0004121,UBERON:0004288,UBERON:0004765,UBERON:0005291,UBERON:0005423,UBERON:0005620,UBERON:0005705,UBERON:0005944,UBERON:0006598,UBERON:0007284,UBERON:0007375,UBERON:0008001,UBERON:0008193,UBERON:0008814,UBERON:0008816,UBERON:0009142,UBERON:0009292
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100669
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!2.22!433.44!TWIST1;;chr1:170632285..170632309,+!p1@PRRX1!2.19!172.11!PRRX1;;chr16:86544113..86544145,+!p1@FOXF1!2.09!150.95!FOXF1;;chr12:52445218..52445237,+!p1@NR4A1!1.81!761.07!NR4A1;;chr10:28034739..28034756,-!p1@MKX!1.80!62.07!MKX;;chr2:157189180..157189290,-!p1@NR4A2!1.77!284.96!NR4A2;;chr9:102584159..102584174,+!p2@NR4A3!1.77!101.57!NR4A3;;chr14:61116183..61116208,-!p1@SIX1!1.76!204.90!SIX1;;chr9:132427883..132427951,+!p2@PRRX2!1.76!57.13!PRRX2;;chr6:1389789..1389821,+!p1@FOXF2!1.75!74.77!FOXF2;;chr9:132427972..132428056,+!p1@PRRX2!1.74!69.12!PRRX2;;chr1:170633348..170633399,+!p2@PRRX1!1.73!71.59!PRRX1;;chr12:85673868..85673881,+!p2@ALX1!1.71!50.79!ALX1;;chr1:170632477..170632506,+!p6@PRRX1!1.66!44.79!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.60!38.79!SIX2;;chr19:45971246..45971265,+!p1@FOSB!1.59!669.73!FOSB;;chr11:46299539..46299620,+!p2@CREB3L1!1.54!56.43!CREB3L1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!33.15!ZBED1;;chr14:37131058..37131139,+!p1@PAX9!1.52!32.09!PAX9;;chr6:134210243..134210257,+!p1@TCF21!1.52!31.74!TCF21;;chr9:102584262..102584276,+!p1@NR4A3!1.50!66.66!NR4A3;;chr12:115122318..115122331,-!p2@TBX3!1.50!30.68!TBX3;;chr3:157824202..157824211,-!p3@SHOX2!1.48!28.92!SHOX2;;chr15:57511609..57511651,+!p2@TCF12!1.44!44.08!TCF12;;chr12:85674018..85674039,+!p3@ALX1!1.44!26.45!ALX1;;chr5:321810..321877,+!p1@AHRR!1.42!77.59!AHRR;;chr14:75745523..75745537,+!p1@FOS!1.41!2803.77!FOS;;chr20:50179368..50179392,-!p2@NFATC2!1.39!30.33!NFATC2;;chr3:157824001..157824078,-!p2@SHOX2!1.39!23.63!SHOX2;;chr2:200322654..200322707,-!p2@SATB2!1.38!33.15!SATB2;;chr4:81118647..81118666,+!p1@PRDM8!1.38!29.98!PRDM8;;chr5:137804484..137804498,+!p2@EGR1!1.35!83.94!EGR1;;chr1:170633262..170633285,+!p3@PRRX1!1.35!24.33!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.35!22.57!GLIS1;;chr11:46299199..46299233,+!p1@CREB3L1!1.34!105.45!CREB3L1;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.86!TFAP2A;;chr1:170632959..170632987,+!p4@PRRX1!1.33!22.22!PRRX1;;chr12:85673977..85674015,+!p1@ALX1!1.33!20.46!ALX1;;chr15:37392724..37392757,-!p1@MEIS2!1.32!89.23!MEIS2;;chr2:172967621..172967637,-!p1@DLX2!1.32!52.20!DLX2;;chr1:170632439..170632465,+!p11@PRRX1!1.32!20.10!PRRX1;;chr12:115122303..115122314,-!p6@TBX3!1.31!19.40!TBX3;;chr2:223163706..223163730,-!p1@PAX3!1.26!17.28!PAX3;;chr6:126240442..126240459,+!p4@NCOA7!1.24!20.81!NCOA7;;chr1:170632723..170632739,+!p8@PRRX1!1.24!16.58!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!1.24!16.22!PRRX1;;chr9:96717629..96717644,-!p1@BARX1!1.23!15.87!BARX1;;chr8:49833948..49833973,-!p2@SNAI2!1.22!96.63!SNAI2;;chr9:102584241..102584261,+!p4@NR4A3!1.21!23.63!NR4A3;;chr19:54058073..54058088,+!p1@ZNF331!1.21!15.17!ZNF331;;chr15:37392616..37392638,-!p2@MEIS2!1.20!45.85!MEIS2;;chr8:99956662..99956684,+!p1@OSR2!1.20!22.92!OSR2;;chr6:10412392..10412409,-!p4@TFAP2A!1.20!16.93!TFAP2A;;chr2:45236579..45236596,-!p2@SIX2!1.20!14.81!SIX2;;chr1:75600067..75600094,+!p2@LHX8!1.19!14.46!LHX8;;chr1:170633058..170633084,+!p5@PRRX1!1.18!14.11!PRRX1;;chr2:172967242..172967265,-!p2@DLX2!1.18!14.11!DLX2;;chr7:28448965..28448994,+!p2@CREB5!1.16!46.91!CREB5;;chr8:60031934..60031986,-!p6@TOX!1.16!13.40!TOX;;chr11:44331576..44331650,-!p1@ALX4!1.16!13.40!ALX4;;chr14:61116168..61116180,-!p2@SIX1!1.15!15.17!SIX1;;chr14:61125184..61125196,-!p8@SIX1!1.14!12.70!SIX1;;chr1:170632250..170632277,+!p7@PRRX1!1.14!12.70!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!1.14!12.70!DLX1;;chr6:10415276..10415341,-!p2@TFAP2A!1.13!15.17!TFAP2A;;chr7:44143925..44143970,+!p1@AEBP1!1.11!261.33!AEBP1;;chr8:49833978..49833996,-!p1@SNAI2!1.11!244.05!SNAI2;;chr16:86600426..86600441,+!p1@FOXC2!1.11!29.62!FOXC2;;chr14:24837368..24837401,+!p1@NFATC4!1.11!27.86!NFATC4;;chr3:157823517..157823562,-!p1@SHOX2!1.11!12.70!SHOX2;;chr3:193853927..193853944,+!p1@HES1!1.10!378.07!HES1;;chr6:126240380..126240430,+!p2@NCOA7!1.10!30.33!NCOA7;;chr15:42749722..42749739,-!p2@ZFP106!1.10!20.81!ZFP106;;chr7:19157043..19157088,-!p2@TWIST1!1.08!27.86!TWIST1;;chr7:44143978..44143989,+!p2@AEBP1!1.08!20.10!AEBP1;;chr20:55204351..55204377,+!p1@TFAP2C!1.07!13.75!TFAP2C;;chr1:170632683..170632696,+!p12@PRRX1!1.06!10.58!PRRX1;;chr2:100721881..100721904,-!p6@AFF3!1.06!10.58!AFF3;;chr19:13134772..13134822,+!p2@NFIX!1.04!14.81!NFIX;;chr14:75746722..75746777,+!p2@FOS!1.04!12.70!FOS;;chr7:14028488..14028516,-!p2@ETV1!1.04!10.93!ETV1;;chr19:54041669..54041697,+!p2@ZNF331!1.04!9.87!ZNF331;;chr5:72744594..72744609,-!p1@FOXD1!1.03!45.50!FOXD1;;chr20:48599506..48599526,+!p1@SNAI1!1.02!62.42!SNAI1;;chr15:37392703..37392717,-!p8@MEIS2!1.02!13.40!MEIS2;;chr2:5832508..5832524,+!p1@SOX11!1.02!9.52!SOX11;;chr9:124991204..124991246,-!p1@LHX6!1.02!9.52!LHX6;;chr8:77593474..77593612,+!p1@ZFHX4!1.01!39.50!ZFHX4;;chr6:1389824..1389840,+!p3@FOXF2!1.01!9.17!FOXF2;;chr6:19837592..19837621,+!p1@ID4!1.00!55.72!ID4;;chr4:4861385..4861398,+!p1@MSX1!1.00!27.51!MSX1;;chr8:60031809..60031835,-!p4@TOX!1.00!11.64!TOX;;chr12:115121962..115121987,-!p1@TBX3!0.99!75.83!TBX3;;chr6:126240463..126240489,+!p6@NCOA7!0.99!9.87!NCOA7;;chr9:102584278..102584285,+!p5@NR4A3!0.99!8.82!NR4A3;;chr3:39195037..39195069,-!p2@CSRNP1!0.98!54.66!CSRNP1;;chr2:172967276..172967296,-!p3@DLX2!0.98!8.46!DLX2;;chr5:137801160..137801176,+!p1@EGR1!0.97!852.42!EGR1;;chr19:12902289..12902307,+!p1@JUNB!0.96!1909.74!JUNB;;chr14:73360799..73360817,-!p1@DPF3!0.96!29.27!DPF3;;chr2:19558373..19558392,-!p1@OSR1!0.96!22.57!OSR1;;chr2:200323414..200323455,-!p1@SATB2!0.96!17.63!SATB2;;chr8:60031682..60031710,-!p2@TOX!0.96!13.40!TOX;;chr15:37392534..37392562,-!p10@MEIS2!0.96!8.82!MEIS2;;chr11:46299443..46299459,+!p4@CREB3L1!0.96!8.11!CREB3L1;;chr14:37126765..37126799,+!p2@PAX9!0.96!8.11!PAX9;;chr8:60031762..60031803,-!p3@TOX!0.95!11.64!TOX;;chr18:22932080..22932170,-!p1@ZNF521!0.94!33.50!ZNF521;;chr12:115121770..115121781,-!p4@TBX3!0.94!7.76!TBX3;;chr14:61190754..61190776,-!p6@SIX4!0.94!7.76!SIX4;;chr21:38071430..38071456,+!p1@SIM2!0.94!7.76!SIM2;;chr8:60031619..60031676,-!p1@TOX!0.92!16.22!TOX;;chr7:44143997..44144008,+!p3@AEBP1!0.92!9.52!AEBP1;;chr1:935398..935465,-!p2@HES4!0.91!15.17!HES4;;chr20:30193083..30193098,+!p1@ID1!0.90!583.68!ID1;;chr1:170632325..170632339,+!p24@PRRX1!0.89!6.70!PRRX1;;chr12:52448213..52448262,+!p6@NR4A1!0.89!6.70!NR4A1;;chr14:75747296..75747329,+!p4@FOS!0.89!6.70!FOS;;chr7:17338266..17338282,+!p1@AHR!0.88!75.47!AHR;;chr12:53614115..53614154,-!p1@RARG!0.88!36.68!RARG;;chr5:92918919..92918942,+!p1@NR2F1!0.88!31.04!NR2F1;;chr15:37390850..37390909,-!p3@MEIS2!0.88!13.40!MEIS2;;chr5:137804130..137804156,+!p5@EGR1!0.88!7.05!EGR1;;chr3:39195075..39195088,-!p1@CSRNP1!0.87!42.32!CSRNP1;;chr17:59477233..59477263,+!p1@TBX2!0.87!20.81!TBX2;;chr6:1610293..1610310,+!p1@FOXC1!0.87!10.93!FOXC1;;chr16:86600870..86600921,+!p2@FOXC2!0.87!6.35!FOXC2;;chr1:170632583..170632590,+!p26@PRRX1!0.87!6.35!PRRX1;;chr1:212782094..212782109,+!p1@ATF3!0.86!181.28!ATF3;;chr7:28220198..28220269,-!p2@JAZF1!0.86!59.60!JAZF1;;chr18:3449330..3449344,+!p10@TGIF1!0.86!8.46!TGIF1;;chr9:110252035..110252057,-!p1@KLF4!0.85!103.33!KLF4;;chr8:22550982..22550999,-!p1@EGR3!0.85!17.99!EGR3;;chr1:935467..935484,-!p1@HES4!0.84!27.51!HES4;;chr8:80679993..80680011,-!p1@HEY1!0.84!8.82!HEY1;;chr1:170632137..170632172,+!p10@PRRX1!0.84!6.00!PRRX1;;chr12:115121802..115121814,-!p5@TBX3!0.84!6.00!TBX3;;chr12:52448420..52448460,+!p5@NR4A1!0.84!6.00!NR4A1;;chr12:52450298..52450331,+!p11@NR4A1!0.84!6.00!NR4A1;;chr2:172967353..172967365,-!p5@DLX2!0.84!6.00!DLX2;;chr9:73028814..73028895,-!p1@KLF9!0.83!60.66!KLF9;;chr9:73029219..73029289,-!p2@KLF9!0.83!18.69!KLF9;;chr21:36260295..36260310,-!p3@RUNX1!0.83!9.52!RUNX1;;chr1:23885981..23886002,-!p1@ID3!0.82!1058.03!ID3;;chr2:8822176..8822196,+!p1@ID2!0.82!842.19!ID2;;chr10:77161650..77161661,-!p4@ZNF503!0.82!8.11!ZNF503;;chr1:209979467..209979494,-!p1@IRF6!0.82!6.35!IRF6;;chr19:45977697..45977713,+!p4@FOSB!0.82!5.64!FOSB;;chr1:170632310..170632321,+!p15@PRRX1!0.82!5.64!PRRX1;;chr7:14025855..14025890,-!p6@ETV1!0.82!5.64!ETV1;;chr2:157186630..157186686,-!p6@NR4A2!0.82!5.64!NR4A2;;chr18:77155922..77155939,+!p1@NFATC1!0.81!15.87!NFATC1;;chr9:94186101..94186122,-!p1@NFIL3!0.80!80.41!NFIL3;;chr12:66218598..66218645,+!p2@HMGA2!0.80!26.10!HMGA2;;chr11:44331679..44331702,-!p2@ALX4!0.80!5.29!ALX4;;chr12:115122262..115122271,-!p7@TBX3!0.80!5.29!TBX3;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.80!5.29!SEBOX;;chr19:45977993..45978005,+!p6@FOSB!0.80!5.29!FOSB;;chr1:170632115..170632136,+!p9@PRRX1!0.80!5.29!PRRX1;;chr2:200213794..200213807,-!p9@SATB2!0.80!5.29!SATB2;;chr9:130966497..130966541,-!p4@CIZ1!0.80!5.29!CIZ1;;chr15:37392593..37392607,-!p13@MEIS2!0.79!6.35!MEIS2;;chr7:1570388..1570418,+!p2@MAFK!0.77!11.29!MAFK;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.46!FOXD1;;chr8:60031840..60031869,-!p5@TOX!0.77!4.94!TOX;;chr12:52448293..52448318,+!p10@NR4A1!0.77!4.94!NR4A1;;chr12:53625846..53625861,-!p6@RARG!0.77!4.94!RARG;;chr16:31076332..31076388,-!p3@ZNF668!0.77!4.94!ZNF668;;chr4:331643..331648,+!p3@ZNF141!0.77!4.94!ZNF141;;chr6:21597765..21597779,+!p2@SOX4!0.76!42.67!SOX4;;chr2:239756671..239756732,+!p1@TWIST2!0.76!16.58!TWIST2;;chr9:94186085..94186096,-!p3@NFIL3!0.75!8.11!NFIL3;;chr19:47523058..47523114,+!p1@NPAS1!0.75!4.58!NPAS1;;chr12:52448338..52448401,+!p7@NR4A1!0.75!4.58!NR4A1;;chr14:37126814..37126834,+!p4@PAX9!0.75!4.58!PAX9;;chr12:66218836..66218888,+!p1@HMGA2!0.73!45.14!HMGA2;;chr7:17338324..17338341,+!p3@AHR!0.73!16.22!AHR;;chr7:28448995..28449011,+!p4@CREB5!0.73!6.35!CREB5;;chr9:110251836..110251887,-!p4@KLF4!0.73!6.00!KLF4;;chr12:66218255..66218304,+!p3@HMGA2!0.72!12.34!HMGA2;;chr2:239756739..239756755,+!p2@TWIST2!0.72!7.76!TWIST2;;chr2:172949484..172949522,+!p1@DLX1!0.72!4.23!DLX1;;chr14:61125018..61125037,-!p9@SIX1!0.72!4.23!SIX1;;chr6:10412576..10412599,-!p5@TFAP2A!0.72!4.23!TFAP2A;;chr8:93115584..93115642,-!p5@RUNX1T1!0.72!4.23!RUNX1T1;;chr19:45972203..45972226,+!p5@FOSB!0.72!4.23!FOSB;;chr1:170632647..170632659,+!p17@PRRX1!0.72!4.23!PRRX1;;chr16:4366053..4366076,+!p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|ffid_belonging_in_development=CL:0000134,UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0003104,UBERON:0005062,UBERON:0007284,UBERON:0003099,UBERON:0003852,UBERON:0010316
|fonse_cell_line=FF:0100669
|fonse_cell_line=FF:0100669
|fonse_cell_line_closure=FF:0100669
|fonse_cell_line_closure=FF:0100669
Line 67: Line 40:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg38.nobarcode.ctss.bed.gz
|id=FF:10813-111B3
|is_a=CL:0000134;;EFO:0002091;;FF:0000210;;FF:0100669;;UBERON:0005705
|is_obsolete=
|library_id=CNhs11894
|library_id_phase_based=2:CNhs11894
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10813
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10813
|name=normal embryonic palatal mesenchymal cell line:HEPM
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11894,LSID830,release010,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=111
|rna_catalog_number=
|rna_concentration=0.54576
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.59
|rna_od260/280=2.04
|rna_position=B3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=111B3
|rna_weight_ug=14.73552
|sample_age=fetal
|sample_category=cell lines
|sample_cell_catalog=jcrb9095
|sample_cell_line=HEPM
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.31982057709408e-205!GO:0005737;cytoplasm;1.92463049024484e-175!GO:0043226;organelle;5.5316168798756e-166!GO:0043231;intracellular membrane-bound organelle;7.58236987328901e-166!GO:0043229;intracellular organelle;1.09116499791044e-165!GO:0043227;membrane-bound organelle;1.09116499791044e-165!GO:0044444;cytoplasmic part;4.27289398641198e-131!GO:0044422;organelle part;5.68882121190272e-118!GO:0044446;intracellular organelle part;1.82624563147585e-116!GO:0032991;macromolecular complex;8.67590790348299e-86!GO:0005515;protein binding;2.68185215712608e-74!GO:0044237;cellular metabolic process;4.05194916437247e-73!GO:0044238;primary metabolic process;4.55492542173037e-73!GO:0030529;ribonucleoprotein complex;4.90159858777363e-72!GO:0043170;macromolecule metabolic process;8.3334652646923e-69!GO:0005739;mitochondrion;3.34908856048489e-59!GO:0043233;organelle lumen;1.02738919542474e-58!GO:0031974;membrane-enclosed lumen;1.02738919542474e-58!GO:0005634;nucleus;2.2196377804333e-56!GO:0003723;RNA binding;1.8848174674204e-54!GO:0044428;nuclear part;8.58318248341915e-52!GO:0019538;protein metabolic process;3.19262142439896e-47!GO:0031090;organelle membrane;1.05086070510126e-46!GO:0005840;ribosome;2.625293692352e-46!GO:0043234;protein complex;2.93794548751937e-44!GO:0016043;cellular component organization and biogenesis;7.76181783424218e-43!GO:0044260;cellular macromolecule metabolic process;7.91132153463327e-43!GO:0006412;translation;5.56054715303997e-42!GO:0044267;cellular protein metabolic process;5.74794147277269e-42!GO:0003735;structural constituent of ribosome;3.74238196633903e-41!GO:0044429;mitochondrial part;5.96990485455252e-39!GO:0015031;protein transport;4.41698647039728e-37!GO:0033036;macromolecule localization;1.4946606109283e-36!GO:0033279;ribosomal subunit;2.4294959313084e-36!GO:0009058;biosynthetic process;5.09922230503528e-36!GO:0043283;biopolymer metabolic process;1.50638937286e-35!GO:0006396;RNA processing;4.49979118294061e-35!GO:0005829;cytosol;9.79917389414163e-35!GO:0009059;macromolecule biosynthetic process;1.55492246507504e-34!GO:0008104;protein localization;2.12883080191347e-34!GO:0045184;establishment of protein localization;4.1714656112938e-34!GO:0031967;organelle envelope;1.45641184840752e-32!GO:0031981;nuclear lumen;1.6390252627383e-32!GO:0044249;cellular biosynthetic process;2.03398167526155e-32!GO:0010467;gene expression;2.33076488438591e-32!GO:0031975;envelope;2.35330353109077e-32!GO:0016071;mRNA metabolic process;4.84124333874985e-31!GO:0046907;intracellular transport;1.07148397101915e-29!GO:0008380;RNA splicing;2.37455728464395e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.18596101230586e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.67762462858404e-26!GO:0065003;macromolecular complex assembly;2.48559154308815e-26!GO:0006397;mRNA processing;4.42881850239033e-26!GO:0005740;mitochondrial envelope;1.60906427041519e-25!GO:0019866;organelle inner membrane;5.26284904877385e-25!GO:0006886;intracellular protein transport;5.42061199540818e-25!GO:0031966;mitochondrial membrane;1.71322754762751e-24!GO:0006996;organelle organization and biogenesis;2.2417407531262e-24!GO:0043228;non-membrane-bound organelle;4.87579014065704e-24!GO:0043232;intracellular non-membrane-bound organelle;4.87579014065704e-24!GO:0005743;mitochondrial inner membrane;4.41186143303081e-23!GO:0022607;cellular component assembly;7.97536857443584e-23!GO:0005783;endoplasmic reticulum;2.57354700770353e-22!GO:0006119;oxidative phosphorylation;2.74850539932576e-21!GO:0005654;nucleoplasm;4.32161220018142e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.31915949597391e-21!GO:0044445;cytosolic part;1.09858540688015e-20!GO:0044455;mitochondrial membrane part;1.84261527142611e-20!GO:0005681;spliceosome;1.21312859807166e-19!GO:0006457;protein folding;2.14785824361576e-19!GO:0015934;large ribosomal subunit;2.68790428026501e-19!GO:0012505;endomembrane system;9.79148653131752e-19!GO:0048770;pigment granule;1.08385329302459e-18!GO:0042470;melanosome;1.08385329302459e-18!GO:0051649;establishment of cellular localization;1.28414405905827e-18!GO:0051641;cellular localization;1.97898509055815e-18!GO:0015935;small ribosomal subunit;4.32266786397389e-18!GO:0005794;Golgi apparatus;6.60524893394153e-18!GO:0044451;nucleoplasm part;1.15619474785175e-17!GO:0008134;transcription factor binding;1.55231457148385e-17!GO:0006259;DNA metabolic process;7.88170216804088e-17!GO:0044432;endoplasmic reticulum part;1.27248925449204e-16!GO:0005746;mitochondrial respiratory chain;2.03138847065473e-16!GO:0006512;ubiquitin cycle;2.71740412830304e-16!GO:0031980;mitochondrial lumen;4.00109894626191e-16!GO:0005759;mitochondrial matrix;4.00109894626191e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.60640668974424e-16!GO:0007049;cell cycle;2.31228456070922e-15!GO:0016874;ligase activity;3.19823033448975e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.89366536025357e-15!GO:0003954;NADH dehydrogenase activity;3.89366536025357e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.89366536025357e-15!GO:0003676;nucleic acid binding;4.63863967897374e-15!GO:0016462;pyrophosphatase activity;6.71563613335636e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.07524297226189e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.17697496660505e-14!GO:0043285;biopolymer catabolic process;1.64839155630608e-14!GO:0022618;protein-RNA complex assembly;2.30450519480683e-14!GO:0005761;mitochondrial ribosome;4.06377590934285e-14!GO:0000313;organellar ribosome;4.06377590934285e-14!GO:0017111;nucleoside-triphosphatase activity;4.17922426505526e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;4.17922426505526e-14!GO:0000166;nucleotide binding;4.69126333757199e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.73033004015473e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.64484514368733e-14!GO:0019941;modification-dependent protein catabolic process;7.84822034732962e-14!GO:0043632;modification-dependent macromolecule catabolic process;7.84822034732962e-14!GO:0044265;cellular macromolecule catabolic process;8.07726860883948e-14!GO:0044257;cellular protein catabolic process;9.61674291771402e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.06549305815106e-13!GO:0030163;protein catabolic process;1.90892205734499e-13!GO:0016070;RNA metabolic process;2.05659987092457e-13!GO:0051186;cofactor metabolic process;2.27140170299418e-13!GO:0048193;Golgi vesicle transport;2.54839371748771e-13!GO:0006605;protein targeting;3.13150678874603e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.30019223587696e-13!GO:0045271;respiratory chain complex I;3.30019223587696e-13!GO:0005747;mitochondrial respiratory chain complex I;3.30019223587696e-13!GO:0051082;unfolded protein binding;4.14085027058557e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.62714022114336e-13!GO:0042773;ATP synthesis coupled electron transport;5.62714022114336e-13!GO:0009057;macromolecule catabolic process;7.38447304839813e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.0202768764221e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.05888259142178e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.16999495884578e-12!GO:0016192;vesicle-mediated transport;1.29245424367775e-12!GO:0008135;translation factor activity, nucleic acid binding;2.96314595703108e-12!GO:0005793;ER-Golgi intermediate compartment;3.27843030126039e-12!GO:0048523;negative regulation of cellular process;5.03192948285986e-12!GO:0003712;transcription cofactor activity;1.11084322665995e-11!GO:0005730;nucleolus;1.30785569480281e-11!GO:0043412;biopolymer modification;1.51307659950149e-11!GO:0022402;cell cycle process;3.1933715756835e-11!GO:0012501;programmed cell death;5.90907793925371e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.06786292579755e-11!GO:0006464;protein modification process;9.05682818823071e-11!GO:0006366;transcription from RNA polymerase II promoter;9.12546846358549e-11!GO:0006915;apoptosis;1.25418001413542e-10!GO:0005789;endoplasmic reticulum membrane;1.58700391782426e-10!GO:0044248;cellular catabolic process;1.7938209351232e-10!GO:0048519;negative regulation of biological process;2.40831591903556e-10!GO:0006732;coenzyme metabolic process;2.70905630362343e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.0143266166386e-10!GO:0000375;RNA splicing, via transesterification reactions;3.0143266166386e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.0143266166386e-10!GO:0008639;small protein conjugating enzyme activity;4.63636172815861e-10!GO:0000278;mitotic cell cycle;5.45555798946406e-10!GO:0004842;ubiquitin-protein ligase activity;7.04816916139612e-10!GO:0008219;cell death;8.33593725453099e-10!GO:0016265;death;8.33593725453099e-10!GO:0019787;small conjugating protein ligase activity;1.15196463541485e-09!GO:0032553;ribonucleotide binding;1.17634252406245e-09!GO:0032555;purine ribonucleotide binding;1.17634252406245e-09!GO:0009055;electron carrier activity;1.21172636840413e-09!GO:0003743;translation initiation factor activity;2.02316599015313e-09!GO:0005788;endoplasmic reticulum lumen;3.07076672778835e-09!GO:0017076;purine nucleotide binding;3.34924772973332e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.44229600796401e-09!GO:0006413;translational initiation;3.65791263633238e-09!GO:0009259;ribonucleotide metabolic process;3.76802318362315e-09!GO:0043687;post-translational protein modification;4.21188432887773e-09!GO:0006974;response to DNA damage stimulus;4.60664820193701e-09!GO:0050794;regulation of cellular process;4.84421106493957e-09!GO:0006446;regulation of translational initiation;7.85472752576965e-09!GO:0044431;Golgi apparatus part;1.0028938980568e-08!GO:0009150;purine ribonucleotide metabolic process;1.0028938980568e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.00593047996379e-08!GO:0006163;purine nucleotide metabolic process;1.14854259339332e-08!GO:0031965;nuclear membrane;1.17498647523598e-08!GO:0000074;regulation of progression through cell cycle;1.2168243409174e-08!GO:0051726;regulation of cell cycle;1.22052573039578e-08!GO:0044453;nuclear membrane part;2.75479377351969e-08!GO:0008565;protein transporter activity;2.76160152967166e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.02367205641026e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.37566577587639e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.49490945046492e-08!GO:0016881;acid-amino acid ligase activity;3.60429875378601e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.7929382350193e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.99039635441003e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.99039635441003e-08!GO:0006164;purine nucleotide biosynthetic process;4.15527360630343e-08!GO:0009260;ribonucleotide biosynthetic process;4.16743945345149e-08!GO:0005635;nuclear envelope;4.32372721379265e-08!GO:0030120;vesicle coat;4.93607721163803e-08!GO:0030662;coated vesicle membrane;4.93607721163803e-08!GO:0009141;nucleoside triphosphate metabolic process;5.36990813672658e-08!GO:0016604;nuclear body;5.8314687112181e-08!GO:0006913;nucleocytoplasmic transport;7.33262309615014e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.12632530515787e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.12632530515787e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.36328331887873e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.36328331887873e-08!GO:0006461;protein complex assembly;1.08892188686972e-07!GO:0015986;ATP synthesis coupled proton transport;1.0901444566431e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.0901444566431e-07!GO:0009060;aerobic respiration;1.12701623678423e-07!GO:0003924;GTPase activity;1.15768398340101e-07!GO:0045333;cellular respiration;1.27388424996287e-07!GO:0051169;nuclear transport;1.29152748505783e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.30345424052934e-07!GO:0042254;ribosome biogenesis and assembly;1.56419092475403e-07!GO:0005768;endosome;1.8303861240465e-07!GO:0005694;chromosome;2.24890650944164e-07!GO:0051276;chromosome organization and biogenesis;2.95293102337112e-07!GO:0048475;coated membrane;3.12015271562153e-07!GO:0030117;membrane coat;3.12015271562153e-07!GO:0065002;intracellular protein transport across a membrane;3.13753199081632e-07!GO:0051246;regulation of protein metabolic process;3.22719541407144e-07!GO:0065004;protein-DNA complex assembly;3.57514462611091e-07!GO:0006323;DNA packaging;3.62521322427287e-07!GO:0008361;regulation of cell size;3.79569201154053e-07!GO:0017038;protein import;4.05137592657275e-07!GO:0006916;anti-apoptosis;4.38456429039501e-07!GO:0016049;cell growth;4.5821209968767e-07!GO:0042981;regulation of apoptosis;4.87418006707639e-07!GO:0019829;cation-transporting ATPase activity;4.9918573970797e-07!GO:0043067;regulation of programmed cell death;5.03118792375314e-07!GO:0043069;negative regulation of programmed cell death;5.23844928263588e-07!GO:0005524;ATP binding;5.24973440291247e-07!GO:0031324;negative regulation of cellular metabolic process;5.55048127246529e-07!GO:0006281;DNA repair;6.00471836624772e-07!GO:0046034;ATP metabolic process;6.07030612726797e-07!GO:0045786;negative regulation of progression through cell cycle;6.39187169140739e-07!GO:0032559;adenyl ribonucleotide binding;6.47217858722456e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.85962304926045e-07!GO:0043066;negative regulation of apoptosis;7.37122795923645e-07!GO:0050789;regulation of biological process;9.8351601048053e-07!GO:0016564;transcription repressor activity;9.8351601048053e-07!GO:0006754;ATP biosynthetic process;1.14748536208113e-06!GO:0006753;nucleoside phosphate metabolic process;1.14748536208113e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.17170385500088e-06!GO:0003714;transcription corepressor activity;1.33213151990455e-06!GO:0051188;cofactor biosynthetic process;1.39725279178626e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.43313842432849e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.43313842432849e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.43313842432849e-06!GO:0016607;nuclear speck;1.43313842432849e-06!GO:0032446;protein modification by small protein conjugation;1.50442284585734e-06!GO:0042623;ATPase activity, coupled;1.57204318497303e-06!GO:0015630;microtubule cytoskeleton;1.62063199039157e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.62305289190997e-06!GO:0009719;response to endogenous stimulus;1.65863311196267e-06!GO:0000139;Golgi membrane;1.88042855758448e-06!GO:0030554;adenyl nucleotide binding;1.94643830942415e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.94643830942415e-06!GO:0007005;mitochondrion organization and biogenesis;1.95952059256896e-06!GO:0044427;chromosomal part;2.03567274431244e-06!GO:0016887;ATPase activity;2.16784036475801e-06!GO:0009056;catabolic process;2.17761498303911e-06!GO:0031988;membrane-bound vesicle;2.22239091529324e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.31180471887368e-06!GO:0051187;cofactor catabolic process;2.36035176958048e-06!GO:0005773;vacuole;2.40099820222356e-06!GO:0000087;M phase of mitotic cell cycle;2.5532834680002e-06!GO:0016567;protein ubiquitination;2.59302944863968e-06!GO:0006099;tricarboxylic acid cycle;2.80629225579668e-06!GO:0046356;acetyl-CoA catabolic process;2.80629225579668e-06!GO:0006399;tRNA metabolic process;2.8574501384713e-06!GO:0043038;amino acid activation;2.86464057325326e-06!GO:0006418;tRNA aminoacylation for protein translation;2.86464057325326e-06!GO:0043039;tRNA aminoacylation;2.86464057325326e-06!GO:0007067;mitosis;2.88700239242378e-06!GO:0005643;nuclear pore;2.88965618448627e-06!GO:0006333;chromatin assembly or disassembly;3.36705143197201e-06!GO:0045259;proton-transporting ATP synthase complex;3.68070412932032e-06!GO:0005667;transcription factor complex;4.10713665214049e-06!GO:0001558;regulation of cell growth;4.36465232471483e-06!GO:0009892;negative regulation of metabolic process;4.6572230368327e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.62601885025303e-06!GO:0009109;coenzyme catabolic process;5.74936446690106e-06!GO:0016491;oxidoreductase activity;6.13354052888212e-06!GO:0008654;phospholipid biosynthetic process;6.32995960241665e-06!GO:0000151;ubiquitin ligase complex;7.39804020376006e-06!GO:0006260;DNA replication;7.42084325550102e-06!GO:0006084;acetyl-CoA metabolic process;7.61268328241724e-06!GO:0000785;chromatin;7.88032615507451e-06!GO:0005798;Golgi-associated vesicle;8.69147510940625e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.03080252896704e-05!GO:0022403;cell cycle phase;1.03950310255906e-05!GO:0003713;transcription coactivator activity;1.04793377414548e-05!GO:0051301;cell division;1.0618602726766e-05!GO:0003697;single-stranded DNA binding;1.07702988898989e-05!GO:0009117;nucleotide metabolic process;1.08638485792031e-05!GO:0051789;response to protein stimulus;1.25404075682841e-05!GO:0006986;response to unfolded protein;1.25404075682841e-05!GO:0031982;vesicle;1.33862687718813e-05!GO:0006613;cotranslational protein targeting to membrane;1.53754310379923e-05!GO:0031410;cytoplasmic vesicle;1.65495907068255e-05!GO:0046930;pore complex;1.69355778462137e-05!GO:0000323;lytic vacuole;1.84638891801437e-05!GO:0005764;lysosome;1.84638891801437e-05!GO:0005762;mitochondrial large ribosomal subunit;1.95466140865203e-05!GO:0000315;organellar large ribosomal subunit;1.95466140865203e-05!GO:0016563;transcription activator activity;2.15727339673525e-05!GO:0043566;structure-specific DNA binding;2.27583922156166e-05!GO:0006752;group transfer coenzyme metabolic process;2.2773917614401e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.39612798819178e-05!GO:0005525;GTP binding;2.46854148266362e-05!GO:0004298;threonine endopeptidase activity;2.68069744162444e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.69852117808844e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.79834531301699e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.83099238711673e-05!GO:0006334;nucleosome assembly;3.04389128901246e-05!GO:0004386;helicase activity;3.26625962560196e-05!GO:0005905;coated pit;3.27083841978739e-05!GO:0009108;coenzyme biosynthetic process;3.39075963959897e-05!GO:0008026;ATP-dependent helicase activity;3.48520084243478e-05!GO:0031252;leading edge;3.74312372922825e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.74312372922825e-05!GO:0000245;spliceosome assembly;3.99143328510977e-05!GO:0050657;nucleic acid transport;4.04321694175259e-05!GO:0051236;establishment of RNA localization;4.04321694175259e-05!GO:0050658;RNA transport;4.04321694175259e-05!GO:0006793;phosphorus metabolic process;4.39020935317295e-05!GO:0006796;phosphate metabolic process;4.39020935317295e-05!GO:0045454;cell redox homeostasis;4.64998016640138e-05!GO:0006403;RNA localization;5.01386785325108e-05!GO:0030867;rough endoplasmic reticulum membrane;5.23784286734179e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.28123311280381e-05!GO:0016859;cis-trans isomerase activity;6.08086152557985e-05!GO:0016481;negative regulation of transcription;6.2510663142381e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.61200203379111e-05!GO:0031497;chromatin assembly;7.86684178699293e-05!GO:0040008;regulation of growth;9.11510137199157e-05!GO:0015980;energy derivation by oxidation of organic compounds;0.000100089913748953!GO:0044440;endosomal part;0.000103939327617202!GO:0010008;endosome membrane;0.000103939327617202!GO:0006606;protein import into nucleus;0.000113931829117376!GO:0006364;rRNA processing;0.000117371192905448!GO:0032561;guanyl ribonucleotide binding;0.00012375479295398!GO:0019001;guanyl nucleotide binding;0.00012375479295398!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000126536976213297!GO:0043623;cellular protein complex assembly;0.000129537372197079!GO:0005770;late endosome;0.00013106294905236!GO:0048522;positive regulation of cellular process;0.000131125676778861!GO:0051170;nuclear import;0.000134012159162792!GO:0000314;organellar small ribosomal subunit;0.000142979893431372!GO:0005763;mitochondrial small ribosomal subunit;0.000142979893431372!GO:0005813;centrosome;0.000146494124521596!GO:0030133;transport vesicle;0.000148844017473491!GO:0046474;glycerophospholipid biosynthetic process;0.000157207186689714!GO:0043284;biopolymer biosynthetic process;0.000163053452394987!GO:0016568;chromatin modification;0.000171484107011832!GO:0016853;isomerase activity;0.000175642989412489!GO:0016072;rRNA metabolic process;0.00020971900850374!GO:0016740;transferase activity;0.000212818509642064!GO:0051329;interphase of mitotic cell cycle;0.000228809749624072!GO:0016787;hydrolase activity;0.000263692245242145!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000263692245242145!GO:0016310;phosphorylation;0.000266080228073892!GO:0008250;oligosaccharyl transferase complex;0.00027140171352267!GO:0019899;enzyme binding;0.000273130371765708!GO:0006091;generation of precursor metabolites and energy;0.000279975989358157!GO:0004576;oligosaccharyl transferase activity;0.000286952513536757!GO:0043021;ribonucleoprotein binding;0.000302892719704787!GO:0005815;microtubule organizing center;0.000303247046548238!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0003047515468803!GO:0006612;protein targeting to membrane;0.000326345740039556!GO:0006414;translational elongation;0.000346342389697199!GO:0065007;biological regulation;0.000384986854166079!GO:0005048;signal sequence binding;0.000387883545808463!GO:0030663;COPI coated vesicle membrane;0.000430065705380288!GO:0030126;COPI vesicle coat;0.000430065705380288!GO:0019222;regulation of metabolic process;0.000437763582508157!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000444875306335851!GO:0003724;RNA helicase activity;0.000477434524368973!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000543940074090277!GO:0044262;cellular carbohydrate metabolic process;0.000560953238082271!GO:0005885;Arp2/3 protein complex;0.000589753414549149!GO:0051028;mRNA transport;0.000605761231410011!GO:0005769;early endosome;0.000608797373654045!GO:0018196;peptidyl-asparagine modification;0.000726004792726356!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000726004792726356!GO:0051325;interphase;0.000782858518083782!GO:0016779;nucleotidyltransferase activity;0.000822354043308927!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000849974392486452!GO:0051252;regulation of RNA metabolic process;0.000897796630461429!GO:0051920;peroxiredoxin activity;0.000931881845530859!GO:0030036;actin cytoskeleton organization and biogenesis;0.000932601076981293!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000944745990249389!GO:0030137;COPI-coated vesicle;0.000952529359327814!GO:0007243;protein kinase cascade;0.00102419026955809!GO:0007010;cytoskeleton organization and biogenesis;0.00103357399611554!GO:0007050;cell cycle arrest;0.00103753291050626!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00104238609451974!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00104238609451974!GO:0000279;M phase;0.00119999326121596!GO:0065009;regulation of a molecular function;0.00135887125610684!GO:0019843;rRNA binding;0.00136727673910026!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00137571924796258!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00137571924796258!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00137571924796258!GO:0031968;organelle outer membrane;0.00137571924796258!GO:0019867;outer membrane;0.00143924786240087!GO:0051427;hormone receptor binding;0.00159905450856665!GO:0003729;mRNA binding;0.00167374184053267!GO:0046467;membrane lipid biosynthetic process;0.00169960974166894!GO:0046489;phosphoinositide biosynthetic process;0.00169960974166894!GO:0043681;protein import into mitochondrion;0.0017653782113092!GO:0006891;intra-Golgi vesicle-mediated transport;0.00176660720797585!GO:0048468;cell development;0.00179098038327272!GO:0045892;negative regulation of transcription, DNA-dependent;0.001808746978419!GO:0043488;regulation of mRNA stability;0.00183028176273359!GO:0043487;regulation of RNA stability;0.00183028176273359!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00185403793647077!GO:0016044;membrane organization and biogenesis;0.0021134582830414!GO:0006839;mitochondrial transport;0.00213768046000913!GO:0031543;peptidyl-proline dioxygenase activity;0.00219642835326861!GO:0003899;DNA-directed RNA polymerase activity;0.00229779134354051!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00233142001423875!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00249373160480737!GO:0005791;rough endoplasmic reticulum;0.00268793121868069!GO:0035257;nuclear hormone receptor binding;0.00274749357909746!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00277615441973274!GO:0030132;clathrin coat of coated pit;0.00287300922673289!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00287529351563815!GO:0006650;glycerophospholipid metabolic process;0.00290508590249582!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00293652998032594!GO:0005741;mitochondrial outer membrane;0.00293652998032594!GO:0006626;protein targeting to mitochondrion;0.00301939269498744!GO:0019798;procollagen-proline dioxygenase activity;0.00302280907054225!GO:0030658;transport vesicle membrane;0.00310969544378362!GO:0048500;signal recognition particle;0.0032513549314311!GO:0008092;cytoskeletal protein binding;0.00333749363888373!GO:0031072;heat shock protein binding;0.00345803386850931!GO:0042802;identical protein binding;0.00354442573164411!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00376229815356722!GO:0048518;positive regulation of biological process;0.00381762267432857!GO:0045941;positive regulation of transcription;0.00393185395138226!GO:0000082;G1/S transition of mitotic cell cycle;0.00445675919816748!GO:0005819;spindle;0.00454668578789438!GO:0030027;lamellipodium;0.00468412023566542!GO:0007040;lysosome organization and biogenesis;0.00479131468862462!GO:0030176;integral to endoplasmic reticulum membrane;0.00479131468862462!GO:0008186;RNA-dependent ATPase activity;0.00480126404871649!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00480126404871649!GO:0030134;ER to Golgi transport vesicle;0.00480446270628379!GO:0051168;nuclear export;0.00483913161433192!GO:0009165;nucleotide biosynthetic process;0.00486721183612922!GO:0045792;negative regulation of cell size;0.00486721183612922!GO:0015631;tubulin binding;0.00494116569542721!GO:0005874;microtubule;0.0049984448618348!GO:0030308;negative regulation of cell growth;0.0049984448618348!GO:0016197;endosome transport;0.00503528738874299!GO:0006402;mRNA catabolic process;0.00513244405278887!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00523196937643367!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00523196937643367!GO:0022890;inorganic cation transmembrane transporter activity;0.00532414302188437!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00544097183927216!GO:0030118;clathrin coat;0.00577701229829811!GO:0051098;regulation of binding;0.00577701229829811!GO:0043433;negative regulation of transcription factor activity;0.00590342635352239!GO:0008286;insulin receptor signaling pathway;0.0061429417386158!GO:0045926;negative regulation of growth;0.00616602674038786!GO:0007034;vacuolar transport;0.00640678755609516!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00647970617621097!GO:0045047;protein targeting to ER;0.00647970617621097!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00661636519310726!GO:0015399;primary active transmembrane transporter activity;0.00661636519310726!GO:0051287;NAD binding;0.00682983991882446!GO:0003690;double-stranded DNA binding;0.00682991572273206!GO:0030029;actin filament-based process;0.00691456035352016!GO:0031418;L-ascorbic acid binding;0.00697467940855499!GO:0005637;nuclear inner membrane;0.007485154804287!GO:0030127;COPII vesicle coat;0.00768593566468541!GO:0012507;ER to Golgi transport vesicle membrane;0.00768593566468541!GO:0016363;nuclear matrix;0.00790331967944176!GO:0006261;DNA-dependent DNA replication;0.00790331967944176!GO:0007033;vacuole organization and biogenesis;0.0079468390443049!GO:0006497;protein amino acid lipidation;0.00797323308821275!GO:0007006;mitochondrial membrane organization and biogenesis;0.00797323308821275!GO:0031272;regulation of pseudopodium formation;0.00797323308821275!GO:0031269;pseudopodium formation;0.00797323308821275!GO:0031344;regulation of cell projection organization and biogenesis;0.00797323308821275!GO:0031268;pseudopodium organization and biogenesis;0.00797323308821275!GO:0031346;positive regulation of cell projection organization and biogenesis;0.00797323308821275!GO:0031274;positive regulation of pseudopodium formation;0.00797323308821275!GO:0007041;lysosomal transport;0.0080520808985137!GO:0006509;membrane protein ectodomain proteolysis;0.00809062925756521!GO:0033619;membrane protein proteolysis;0.00809062925756521!GO:0031124;mRNA 3'-end processing;0.00839363545828234!GO:0030660;Golgi-associated vesicle membrane;0.00861875622629024!GO:0003711;transcription elongation regulator activity;0.00867410335996082!GO:0044420;extracellular matrix part;0.00870448103072388!GO:0008180;signalosome;0.00874250356919364!GO:0033673;negative regulation of kinase activity;0.00883963867752087!GO:0006469;negative regulation of protein kinase activity;0.00883963867752087!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00892614299881299!GO:0007264;small GTPase mediated signal transduction;0.00893954865455355!GO:0006979;response to oxidative stress;0.00900857796755518!GO:0017166;vinculin binding;0.00900857796755518!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00921456391135073!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0094473553697946!GO:0006383;transcription from RNA polymerase III promoter;0.0097237844811455!GO:0045893;positive regulation of transcription, DNA-dependent;0.00997008730844478!GO:0003746;translation elongation factor activity;0.0100851255767208!GO:0008312;7S RNA binding;0.0101493876251915!GO:0051128;regulation of cellular component organization and biogenesis;0.0101944401511139!GO:0045936;negative regulation of phosphate metabolic process;0.0102551103276219!GO:0008610;lipid biosynthetic process;0.0102551103276219!GO:0048487;beta-tubulin binding;0.010540076300149!GO:0006740;NADPH regeneration;0.0105520876751635!GO:0006098;pentose-phosphate shunt;0.0105520876751635!GO:0015992;proton transport;0.0105521633335819!GO:0006595;polyamine metabolic process;0.0105743256459069!GO:0005869;dynactin complex;0.0108487909982085!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0108487909982085!GO:0048471;perinuclear region of cytoplasm;0.0112156913196484!GO:0008139;nuclear localization sequence binding;0.0113249210957758!GO:0006818;hydrogen transport;0.0113881689308116!GO:0030041;actin filament polymerization;0.0114616335804803!GO:0004004;ATP-dependent RNA helicase activity;0.0116206382282949!GO:0007051;spindle organization and biogenesis;0.0116866239882529!GO:0008047;enzyme activator activity;0.0117625442759176!GO:0045045;secretory pathway;0.0121030275227264!GO:0051348;negative regulation of transferase activity;0.0125244068292126!GO:0046983;protein dimerization activity;0.0125546743388606!GO:0006506;GPI anchor biosynthetic process;0.0128269181650056!GO:0009967;positive regulation of signal transduction;0.0134292749231218!GO:0043022;ribosome binding;0.0135080329616892!GO:0006401;RNA catabolic process;0.0136707831351183!GO:0008154;actin polymerization and/or depolymerization;0.0138682204191554!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0138682204191554!GO:0015002;heme-copper terminal oxidase activity;0.0138682204191554!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0138682204191554!GO:0004129;cytochrome-c oxidase activity;0.0138682204191554!GO:0030384;phosphoinositide metabolic process;0.0138971684240541!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0140011826964826!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0140551695903446!GO:0005581;collagen;0.0151025282858847!GO:0006352;transcription initiation;0.0152776015454159!GO:0051101;regulation of DNA binding;0.0153950324711305!GO:0004860;protein kinase inhibitor activity;0.0155841937711163!GO:0008022;protein C-terminus binding;0.015784515105027!GO:0006505;GPI anchor metabolic process;0.0162972169340807!GO:0016272;prefoldin complex;0.0168635157057725!GO:0005100;Rho GTPase activator activity;0.0168865869646057!GO:0030125;clathrin vesicle coat;0.0175265581378927!GO:0030665;clathrin coated vesicle membrane;0.0175265581378927!GO:0005096;GTPase activator activity;0.0176936580079356!GO:0000786;nucleosome;0.0179355703246324!GO:0030119;AP-type membrane coat adaptor complex;0.0182630221136713!GO:0030145;manganese ion binding;0.0184590284273831!GO:0003756;protein disulfide isomerase activity;0.0187897928315876!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0187897928315876!GO:0016126;sterol biosynthetic process;0.0191681370738475!GO:0005684;U2-dependent spliceosome;0.0191681370738475!GO:0000059;protein import into nucleus, docking;0.019177746594096!GO:0000049;tRNA binding;0.0192241065077839!GO:0030199;collagen fibril organization;0.0192497238949533!GO:0008632;apoptotic program;0.0194779327800664!GO:0030659;cytoplasmic vesicle membrane;0.0196155849315876!GO:0003684;damaged DNA binding;0.0203641694102976!GO:0031529;ruffle organization and biogenesis;0.0203641694102976!GO:0030880;RNA polymerase complex;0.0203753980693901!GO:0031323;regulation of cellular metabolic process;0.0203753980693901!GO:0004722;protein serine/threonine phosphatase activity;0.0203753980693901!GO:0042158;lipoprotein biosynthetic process;0.0207282410421666!GO:0030833;regulation of actin filament polymerization;0.0222995870838268!GO:0005801;cis-Golgi network;0.0227215449612482!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0229748613293724!GO:0030521;androgen receptor signaling pathway;0.023384211330376!GO:0051087;chaperone binding;0.0234779033225743!GO:0046426;negative regulation of JAK-STAT cascade;0.023843795490487!GO:0006984;ER-nuclear signaling pathway;0.0238574798075749!GO:0042326;negative regulation of phosphorylation;0.0239419139106253!GO:0005862;muscle thin filament tropomyosin;0.0245961292833661!GO:0003923;GPI-anchor transamidase activity;0.0252130924151614!GO:0016255;attachment of GPI anchor to protein;0.0252130924151614!GO:0042765;GPI-anchor transamidase complex;0.0252130924151614!GO:0006778;porphyrin metabolic process;0.0256280461278134!GO:0033013;tetrapyrrole metabolic process;0.0256280461278134!GO:0050811;GABA receptor binding;0.0262392739513377!GO:0008287;protein serine/threonine phosphatase complex;0.0267630665690769!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0269227563389631!GO:0051540;metal cluster binding;0.0271664973930206!GO:0051536;iron-sulfur cluster binding;0.0271664973930206!GO:0005832;chaperonin-containing T-complex;0.0281793833358068!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0283586966737119!GO:0006354;RNA elongation;0.0288308167835649!GO:0016408;C-acyltransferase activity;0.0288675578439965!GO:0050790;regulation of catalytic activity;0.0289540747811433!GO:0044433;cytoplasmic vesicle part;0.0292101793203578!GO:0019752;carboxylic acid metabolic process;0.0294455537426027!GO:0006082;organic acid metabolic process;0.0296776879503672!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0297619516065935!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0297619516065935!GO:0006611;protein export from nucleus;0.0299313202596265!GO:0051539;4 iron, 4 sulfur cluster binding;0.0300385777244006!GO:0031625;ubiquitin protein ligase binding;0.0300385777244006!GO:0001527;microfibril;0.0301398836708615!GO:0030131;clathrin adaptor complex;0.0301650462110882!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0302440208068781!GO:0000209;protein polyubiquitination;0.0311374793550179!GO:0016584;nucleosome positioning;0.0315048669580039!GO:0008147;structural constituent of bone;0.0315793752203958!GO:0008484;sulfuric ester hydrolase activity;0.0316332359863839!GO:0006289;nucleotide-excision repair;0.0319625566805986!GO:0046483;heterocycle metabolic process;0.0322796485146239!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0323493928969708!GO:0051052;regulation of DNA metabolic process;0.0323608286401435!GO:0031123;RNA 3'-end processing;0.0330629390298004!GO:0006897;endocytosis;0.0335047022398355!GO:0010324;membrane invagination;0.0335047022398355!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0336862798399086!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0347007740224116!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0347007740224116!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0347007740224116!GO:0005669;transcription factor TFIID complex;0.0350513140673229!GO:0000902;cell morphogenesis;0.0356276414769784!GO:0032989;cellular structure morphogenesis;0.0356276414769784!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0366167891199568!GO:0000428;DNA-directed RNA polymerase complex;0.0366167891199568!GO:0008652;amino acid biosynthetic process;0.0371020761297056!GO:0051059;NF-kappaB binding;0.0375814898454517!GO:0042585;germinal vesicle;0.0375814898454517!GO:0007569;cell aging;0.0376366633957018!GO:0042168;heme metabolic process;0.0395235403861094!GO:0033239;negative regulation of amine metabolic process;0.0403950510169203!GO:0045763;negative regulation of amino acid metabolic process;0.0403950510169203!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0403950510169203!GO:0043492;ATPase activity, coupled to movement of substances;0.0404914870546111!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0404914870546111!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0404914870546111!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.040598051888335!GO:0005657;replication fork;0.040725251208386!GO:0030911;TPR domain binding;0.0414004325958097!GO:0007030;Golgi organization and biogenesis;0.0418323804647855!GO:0001726;ruffle;0.0421153868079676!GO:0003682;chromatin binding;0.0422511772035952!GO:0006695;cholesterol biosynthetic process;0.0427421745640802!GO:0016251;general RNA polymerase II transcription factor activity;0.0431009789829632!GO:0022408;negative regulation of cell-cell adhesion;0.0431009789829632!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0431009789829632!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.04317002339308!GO:0012506;vesicle membrane;0.0438328005577574!GO:0031902;late endosome membrane;0.0449432551896551!GO:0003678;DNA helicase activity;0.0458395484070982!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0458395484070982!GO:0010257;NADH dehydrogenase complex assembly;0.0458395484070982!GO:0033108;mitochondrial respiratory chain complex assembly;0.0458395484070982!GO:0000096;sulfur amino acid metabolic process;0.0460449161949444!GO:0035035;histone acetyltransferase binding;0.0467255525379539!GO:0006739;NADP metabolic process;0.0477746799604901!GO:0006378;mRNA polyadenylation;0.047959236129747!GO:0031371;ubiquitin conjugating enzyme complex;0.0487221534219277!GO:0008283;cell proliferation;0.0494057127714156!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0496818424652021!GO:0033559;unsaturated fatty acid metabolic process;0.0499690409942209!GO:0006636;unsaturated fatty acid biosynthetic process;0.0499690409942209!GO:0046519;sphingoid metabolic process;0.0499690409942209
|sample_id=10813
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=palate
|top_motifs=FOXL1:2.85083557332;ESR1:2.57837804792;ALX4:2.30780162748;ATF6:2.06650059581;UFEwm:2.06203702592;NKX3-1:2.04055349488;TAL1_TCF{3,4,12}:1.95013468742;HMGA1,2:1.67845845482;HMX1:1.65887577055;ZIC1..3:1.62483626172;EVI1:1.60916709832;GLI1..3:1.59881704758;ZNF384:1.54557953245;NANOG{mouse}:1.53814063805;AIRE:1.48973284488;MAFB:1.36185833217;MYBL2:1.34100461052;LHX3,4:1.23061466907;ZNF238:1.22637027111;KLF4:1.18935129869;TFAP4:1.1565812017;XBP1:1.08536030641;NKX2-1,4:1.06669993401;TEAD1:1.06268207147;FOXD3:1.05823815993;GFI1:1.05458212822;HIF1A:1.04588406923;MTE{core}:1.03151382909;ARID5B:0.949309316;SRF:0.930946516613;RXR{A,B,G}:0.887668581294;GATA4:0.867329448223;PAX4:0.850397693545;CDC5L:0.845607261253;GZF1:0.843841467517;PATZ1:0.840218268402;HOX{A4,D4}:0.839807428784;TFAP2B:0.825471453154;PAX8:0.81398964152;ZNF423:0.807161881664;PRDM1:0.791092072598;FOX{I1,J2}:0.778421851399;TFAP2{A,C}:0.776281282147;TFCP2:0.744019398259;SPZ1:0.707281267488;RBPJ:0.697925456843;MAZ:0.695864343756;HIC1:0.687702374271;TOPORS:0.678123086311;TP53:0.676385571365;ZBTB6:0.646553643211;SOX17:0.644626670008;SOX5:0.622523210527;PAX1,9:0.596508206938;GTF2I:0.596268318447;GFI1B:0.590867092648;TBX4,5:0.574354688451;TLX1..3_NFIC{dimer}:0.534577436735;HSF1,2:0.528046177318;NFATC1..3:0.52510771277;MZF1:0.521750448031;BPTF:0.510409752214;HES1:0.505107122076;IKZF1:0.500470982882;GTF2A1,2:0.497918535963;EGR1..3:0.474362120975;RXRA_VDR{dimer}:0.473476877756;EBF1:0.459454331609;PDX1:0.439043011089;NR6A1:0.429433024607;NR3C1:0.416378681456;POU5F1:0.390683629018;RREB1:0.358003335398;ATF4:0.351680698083;TBP:0.321441997385;STAT5{A,B}:0.316656122983;HOX{A5,B5}:0.31084479881;CREB1:0.310644791036;SP1:0.306973076665;TFDP1:0.295391205557;MTF1:0.293154917027;RFX1:0.280206100961;NFE2L1:0.2755224331;XCPE1{core}:0.269728774803;STAT2,4,6:0.233390374405;NFIL3:0.202610822639;EN1,2:0.188231663586;POU3F1..4:0.182517336843;MYFfamily:0.162778103038;FOXN1:0.155417209484;TEF:0.152451374208;HOX{A6,A7,B6,B7}:0.152192257582;MEF2{A,B,C,D}:0.124221103475;MED-1{core}:0.114140740312;LEF1_TCF7_TCF7L1,2:0.0645275660858;GCM1,2:0.0562334659695;AHR_ARNT_ARNT2:0.0536941767389;IKZF2:0.0492791297399;FOX{F1,F2,J1}:0.0233557897748;HLF:0.0146410327042;FOXO1,3,4:-0.0311856730083;HAND1,2:-0.0362547286455;BACH2:-0.052518344878;REST:-0.0555736516005;bHLH_family:-0.0728347673725;NFIX:-0.0788092901104;CEBPA,B_DDIT3:-0.0896700931254;PAX5:-0.0931107044963;NFE2:-0.0955817279592;NKX2-2,8:-0.101190928639;DBP:-0.108953691867;FOX{D1,D2}:-0.110623532483;FOXP1:-0.139340517777;ATF5_CREB3:-0.150587947247;JUN:-0.151658505024;ONECUT1,2:-0.152334667726;DMAP1_NCOR{1,2}_SMARC:-0.153434076908;NKX6-1,2:-0.160475674893;SOX2:-0.167178600981;FOS_FOS{B,L1}_JUN{B,D}:-0.183652111871;NFE2L2:-0.183900559148;ZNF143:-0.194245179748;MYB:-0.196174425614;NHLH1,2:-0.20521535664;NR1H4:-0.207001332967;FOSL2:-0.215701850265;NKX3-2:-0.239279086437;IRF1,2:-0.251234157442;FOXA2:-0.263531536984;YY1:-0.289405454364;RUNX1..3:-0.291284398264;ATF2:-0.291321306374;PPARG:-0.296371896459;SMAD1..7,9:-0.305410014057;NRF1:-0.365298545838;E2F1..5:-0.368891111944;PAX3,7:-0.372580490681;T:-0.393881680893;NKX2-3_NKX2-5:-0.414196704408;RFX2..5_RFXANK_RFXAP:-0.44528237641;NFKB1_REL_RELA:-0.461563516954;NFY{A,B,C}:-0.466567671286;HNF4A_NR2F1,2:-0.46755473184;FOXP3:-0.475691969481;ELK1,4_GABP{A,B1}:-0.475927907204;ZBTB16:-0.484812870104;HNF1A:-0.491949673417;LMO2:-0.492515683569;POU2F1..3:-0.500843081322;ZFP161:-0.501754395443;EP300:-0.504075255635;TGIF1:-0.520552623795;ZNF148:-0.53320079155;AR:-0.535974099714;RORA:-0.538705585002;SPIB:-0.595524336092;FOXQ1:-0.621797168106;SREBF1,2:-0.63050852164;SNAI1..3:-0.634685258973;FOXM1:-0.652001824617;PBX1:-0.669064208492;TLX2:-0.674523129284;PITX1..3:-0.680281844175;BREu{core}:-0.718063847301;ADNP_IRX_SIX_ZHX:-0.745491123551;SPI1:-0.771326365754;POU6F1:-0.777143244247;CDX1,2,4:-0.786120901891;IRF7:-0.817750800682;HOXA9_MEIS1:-0.826666382582;ALX1:-0.83038599834;ELF1,2,4:-0.871965933611;PRRX1,2:-0.87575280093;ETS1,2:-0.913933306434;HBP1_HMGB_SSRP1_UBTF:-0.984461679606;NR5A1,2:-0.984788470283;ZEB1:-0.985274906712;STAT1,3:-0.986466840568;SOX{8,9,10}:-1.0055443138;OCT4_SOX2{dimer}:-1.07665096183;ESRRA:-1.0766918085;GATA6:-1.10206930669;VSX1,2:-1.11980966381;PAX2:-1.14648383678;PAX6:-1.19872917513;POU1F1:-1.22608304816;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.23461465424;CUX2:-1.28332205549;CRX:-1.40953954776;NANOG:-1.45643892468;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.45740799303;MYOD1:-1.83929551811
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10813-111B3;search_select_hide=table117:FF:10813-111B3
}}
}}

Latest revision as of 15:06, 3 June 2020

Name:normal embryonic palatal mesenchymal cell line:HEPM
Species:Human (Homo sapiens)
Library ID:CNhs11894
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepalate
dev stageNA
sexfemale
agefetal
cell typeunclassifiable
cell lineHEPM
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004738
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11894 CAGE DRX007970 DRR008842
Accession ID Hg19

Library idBAMCTSS
CNhs11894 DRZ000267 DRZ001652
Accession ID Hg38

Library idBAMCTSS
CNhs11894 DRZ011617 DRZ013002
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.124
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.00192
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.454
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.232
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.084
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0444
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.664
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.35
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.601
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0136
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0191
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0145
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.46
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.561
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.232
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.494
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.113
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0625
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.232
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.131
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.54
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.468
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.313
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.232
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic1.137
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.797
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11894

Jaspar motifP-value
MA0002.23.60456e-4
MA0003.10.808
MA0004.10.0325
MA0006.10.983
MA0007.10.855
MA0009.10.227
MA0014.10.37
MA0017.14.50755e-4
MA0018.20.313
MA0019.10.829
MA0024.10.218
MA0025.10.0302
MA0027.10.767
MA0028.10.00257
MA0029.10.944
MA0030.10.484
MA0031.10.028
MA0035.20.00585
MA0038.10.644
MA0039.20.00176
MA0040.10.828
MA0041.10.561
MA0042.10.958
MA0043.10.406
MA0046.10.0228
MA0047.20.228
MA0048.10.0217
MA0050.17.68724e-4
MA0051.10.0883
MA0052.10.647
MA0055.10.765
MA0057.10.399
MA0058.12.02926e-4
MA0059.10.0165
MA0060.10.00506
MA0061.10.00207
MA0062.21.07048e-10
MA0065.20.00274
MA0066.10.356
MA0067.10.699
MA0068.10.287
MA0069.10.162
MA0070.10.525
MA0071.10.469
MA0072.10.449
MA0073.10.547
MA0074.10.403
MA0076.10.00182
MA0077.10.355
MA0078.10.806
MA0079.20.283
MA0080.25.18637e-11
MA0081.10.0148
MA0083.10.0184
MA0084.10.149
MA0087.10.897
MA0088.10.051
MA0090.10.0119
MA0091.10.117
MA0092.10.759
MA0093.10.0275
MA0099.21.57952e-5
MA0100.10.841
MA0101.12.05747e-4
MA0102.20.379
MA0103.10.00392
MA0104.22.30987e-4
MA0105.10.0661
MA0106.10.751
MA0107.12.29844e-4
MA0108.20.102
MA0111.10.622
MA0112.20.684
MA0113.10.69
MA0114.16.35056e-4
MA0115.10.0304
MA0116.10.0909
MA0117.10.447
MA0119.10.484
MA0122.10.0374
MA0124.10.0274
MA0125.10.398
MA0131.10.767
MA0135.10.428
MA0136.13.74997e-15
MA0137.20.25
MA0138.20.437
MA0139.10.486
MA0140.10.0486
MA0141.10.28
MA0142.10.0618
MA0143.10.794
MA0144.10.344
MA0145.10.933
MA0146.10.177
MA0147.10.00134
MA0148.10.184
MA0149.10.288
MA0150.15.29199e-4
MA0152.10.0151
MA0153.10.578
MA0154.10.0572
MA0155.10.0654
MA0156.11.15354e-12
MA0157.10.145
MA0159.10.172
MA0160.10.059
MA0162.10.269
MA0163.10.549
MA0164.10.941
MA0258.10.515
MA0259.10.433



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11894

Novel motifP-value
10.219
100.667
1000.754
1010.73
1020.338
1030.36
1040.846
1050.262
1060.482
1070.418
1080.737
1090.234
110.911
1100.509
1110.214
1120.678
1130.557
1140.631
1152.33578e-4
1160.355
1170.244
1180.694
1190.287
120.262
1200.271
1210.396
1220.0126
1230.0496
1240.631
1250.399
1260.294
1270.477
1280.604
1290.18
130.247
1300.879
1310.891
1320.032
1330.812
1340.177
1350.0779
1360.732
1370.119
1380.539
1390.364
140.107
1400.0941
1410.291
1420.271
1430.596
1440.231
1450.576
1460.145
1470.239
1480.152
1490.313
150.0594
1500.581
1510.274
1520.037
1530.614
1540.814
1550.731
1560.33
1570.319
1580.0211
1590.603
160.169
1600.915
1610.575
1620.918
1630.225
1640.526
1650.245
1660.017
1670.631
1680.171
1690.482
170.635
180.983
190.0214
20.998
200.809
210.634
220.766
230.611
240.215
250.188
260.658
270.57
280.213
290.609
30.392
300.901
310.74
329.46976e-17
331
340.209
350.619
360.0747
370.426
380.151
390.736
40.299
400.0289
410.149
420.324
430.393
440.192
450.255
460.649
470.175
480.512
490.175
50.489
500.938
510.59
520.831
530.123
540.995
550.271
560.541
570.549
580.0815
590.991
60.507
600.58
610.549
620.252
630.945
640.847
650.825
660.0704
670.485
680.957
690.623
70.13
700.298
710.395
720.662
730.324
740.971
750.382
760.998
770.898
780.0345
790.00717
80.556
800.0491
810.961
820.776
830.389
840.96
850.318
860.751
870.84
880.477
890.557
90.738
900.304
910.967
920.804
930.418
940.791
950.967
960.952
970.682
980.0614
990.165



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11894


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001474 (bone element)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0005705 (primary palate mesenchyme)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0004765 (skeletal element)
0008193 (pneumatized bone)
0001708 (jaw skeleton)
0010912 (subdivision of skeleton)
0011159 (primary subdivision of cranial skeletal system)
0002514 (intramembranous bone)
0003457 (head bone)
0008907 (dermal bone)
0008001 (irregular bone)
0007213 (mesenchyme derived from head neural crest)
0009891 (facial mesenchyme)
0003104 (mesenchyme)
0007914 (head or neck bone)
0010317 (germ layer / neural crest derived structure)
0007375 (roof of mouth)
0003323 (mesenchyme of upper jaw)
0010258 (mesenchyme from rhombencephalic neural crest)
0005253 (head mesenchyme)
0007842 (membrane bone)
0004089 (midface)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0001456 (face)
0008895 (splanchnocranium)
0002397 (maxilla)
0003113 (dermatocranium)
0011137 (axial skeletal system)
0003277 (skeleton of upper jaw)
0009142 (entire embryonic mesenchyme)
0010323 (cranial skeletal system)
0001709 (upper jaw region)
0002244 (premaxilla)
0005620 (primary palate)
0010364 (dermal skeleton)
0004288 (skeleton)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100669 (embryonic cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0005062 (neural fold)
UBERON:0007284 (presumptive neural plate)
UBERON:0003099 (cranial neural crest)
UBERON:0003852 (rhombencephalon neural crest)
UBERON:0010316 (germ layer / neural crest)

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