FF:11223-116B8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004778 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX008277;DRR009149;DRZ000574;DRZ001959;DRZ011924;DRZ013309 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:170633348..170633399,+!p2@PRRX1!1.87!98.77!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.80!62.77!PRRX2;;chr6:1389789..1389821,+!p1@FOXF2!1.76!77.26!FOXF2;;chr9:132427972..132428056,+!p1@PRRX2!1.75!71.11!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.74!142.67!TWIST1;;chr16:86544113..86544145,+!p1@FOXF1!1.73!64.97!FOXF1;;chr10:28034739..28034756,-!p1@MKX!1.70!49.17!MKX;;chr1:170632285..170632309,+!p1@PRRX1!1.68!53.12!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!1.59!138.28!SIX1;;chr15:57511609..57511651,+!p2@TCF12!1.59!61.90!TCF12;;chr2:200322654..200322707,-!p2@SATB2!1.54!48.73!SATB2;;chr11:46299199..46299233,+!p1@CREB3L1!1.51!157.59!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!1.46!32.05!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!1.42!72.43!MSX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.41!41.26!CREB3L1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.41!24.58!ZBED1;;chr6:45296048..45296082,+!p1@RUNX2!1.39!27.22!RUNX2;;chr7:96654133..96654150,-!p1@DLX5!1.38!23.27!DLX5;;chr9:96717629..96717644,-!p1@BARX1!1.38!22.83!BARX1;;chr2:19558373..19558392,-!p1@OSR1!1.37!60.58!OSR1;;chr14:37131058..37131139,+!p1@PAX9!1.37!22.39!PAX9;;chr2:200323414..200323455,-!p1@SATB2!1.33!43.02!SATB2;;chr6:1389824..1389840,+!p3@FOXF2!1.28!18.00!FOXF2;;chr5:72744594..72744609,-!p1@FOXD1!1.26!78.14!FOXD1;;chr17:59477233..59477263,+!p1@TBX2!1.17!42.14!TBX2;;chr2:45236540..45236577,-!p1@SIX2!1.15!13.17!SIX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.11!12.73!GLIS1;;chr11:65686732..65686756,+!p2@DRAP1!1.09!48.29!DRAP1;;chr1:170633058..170633084,+!p5@PRRX1!1.09!11.41!PRRX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.05!13.17!TFAP2C;;chr2:172949484..172949522,+!p1@DLX1!1.05!10.10!DLX1;;chr11:65686802..65686818,+!p6@DRAP1!1.04!17.56!DRAP1;;chr14:61116168..61116180,-!p2@SIX1!1.02!10.97!SIX1;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.54!PRRX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.00!14.93!FOXQ1;;chr1:170632137..170632172,+!p10@PRRX1!0.99!8.78!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.98!27.66!AHRR;;chr8:93074803..93074845,-!p1@RUNX1T1!0.97!8.34!RUNX1T1;;chr7:44143925..44143970,+!p1@AEBP1!0.95!182.18!AEBP1;;chr2:172950227..172950249,+!p2@DLX1!0.95!7.90!DLX1;;chr7:19157043..19157088,-!p2@TWIST1!0.94!19.75!TWIST1;;chr2:172967242..172967265,-!p2@DLX2!0.93!7.46!DLX2;;chr14:24837368..24837401,+!p1@NFATC4!0.92!17.56!NFATC4;;chr12:53614115..53614154,-!p1@RARG!0.89!37.75!RARG;;chr11:65687362..65687436,+!p3@DRAP1!0.88!31.61!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!0.88!21.95!TWIST2;;chr1:170632250..170632277,+!p7@PRRX1!0.88!6.58!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.88!6.58!LHX8;;chr11:65687222..65687240,+!p7@DRAP1!0.87!8.34!DRAP1;;chr8:49833978..49833996,-!p1@SNAI2!0.85!134.33!SNAI2;;chr16:54320617..54320643,-!p3@IRX3!0.85!7.90!IRX3;;chr11:46299443..46299459,+!p4@CREB3L1!0.85!6.15!CREB3L1;;chr1:170632723..170632739,+!p8@PRRX1!0.85!6.15!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.84!39.95!SNAI2;;chr16:86600426..86600441,+!p1@FOXC2!0.83!14.93!FOXC2;;chr2:239756739..239756755,+!p2@TWIST2!0.83!10.10!TWIST2;;chr19:31840130..31840160,-!p2@TSHZ3!0.83!9.22!TSHZ3;;chr8:23564065..23564087,-!p1@NKX2-6!0.83!5.71!NKX2-6;;chr1:25291475..25291511,-!p2@RUNX3!0.83!5.71!RUNX3;;chr11:65687158..65687216,+!p4@DRAP1!0.80!32.48!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.22!FOXD1;;chr15:83953397..83953425,-!p1@BNC1!0.80!6.15!BNC1;;chr2:200322229..200322251,-!p3@SATB2!0.80!5.27!SATB2;;chr1:170632477..170632506,+!p6@PRRX1!0.80!5.27!PRRX1;;chr9:96717678..96717689,-!p2@BARX1!0.80!5.27!BARX1;;chr4:81118647..81118666,+!p1@PRDM8!0.79!7.02!PRDM8;;chr2:172967621..172967637,-!p1@DLX2!0.78!14.49!DLX2;;chr12:80085061..80085119,-!p6@PAWR!0.78!8.34!PAWR;;chr16:54320646..54320672,-!p2@IRX3!0.78!7.90!IRX3;;chr10:63809106..63809127,+!p1@ARID5B!0.77!72.87!ARID5B;;chr14:37132241..37132304,+!p3@PAX9!0.77!4.83!PAX9;;chr5:139492456..139492489,+!p7@PURA!0.77!4.83!PURA;;chr22:19748231..19748317,+!p1@TBX1!0.77!4.83!TBX1;;chr2:200322259..200322280,-!p5@SATB2!0.77!4.83!SATB2;;chr1:170632115..170632136,+!p9@PRRX1!0.77!4.83!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.77!4.83!PRRX1;;chr1:75602043..75602093,+!p1@LHX8!0.77!4.83!LHX8;;chr12:66218255..66218304,+!p3@HMGA2!0.76!13.61!HMGA2;;chr5:72743793..72743855,-!p4@FOXD1!0.76!5.71!FOXD1;;chr12:66218598..66218645,+!p2@HMGA2!0.75!23.70!HMGA2;;chr13:74708029..74708077,-!p2@KLF12!0.74!14.05!KLF12;;chr6:45390025..45390076,+!p2@RUNX2!0.73!11.41!RUNX2;;chrX:66763856..66763896,+!p1@AR!0.73!6.58!AR;;chr6:45390077..45390105,+!p9@RUNX2!0.73!5.71!RUNX2;;chr6:1389989..1390019,+!p2@FOXF2!0.73!4.39!FOXF2;;chr7:96654026..96654061,-!p2@DLX5!0.73!4.39!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.73!4.39!TOX;;chr8:93074848..93074871,-!p3@RUNX1T1!0.73!4.39!RUNX1T1;;chr15:57511589..57511608,+!p4@TCF12!0.73!4.39!TCF12;;chr1:170632439..170632465,+!p11@PRRX1!0.73!4.39!PRRX1;;chr12:80085120..80085156,-!p14@PAWR!0.73!4.39!PAWR;;chr14:37126765..37126799,+!p2@PAX9!0.73!4.39!PAX9;;chr3:150126759..150126784,+!p2@TSC22D2!0.72!21.51!TSC22D2;;chr8:106330656..106330684,+!p1@ZFPM2!0.71!11.85!ZFPM2;;chrX:66763815..66763854,+!p2@AR!0.71!5.71!AR;;chr17:59477275..59477286,+!p3@TBX2!0.71!5.71!TBX2;;chr5:72744562..72744573,-!p3@FOXD1!0.71!5.27!FOXD1;;chr17:59477197..59477212,+!p2@TBX2!0.70!7.46!TBX2;;chr5:174151553..174151610,+!p1@MSX2!0.70!7.02!MSX2;;chr6:34204921..34204939,+!p3@HMGA1!0.69!135.21!HMGA1;;chr12:115121962..115121987,-!p1@TBX3!0.69!36.87!TBX3;;chr17:17726907..17726958,-!p2@SREBF1!0.69!27.22!SREBF1;;chr15:42749722..42749739,-!p2@ZFP106!0.69!7.46!ZFP106;;chr16:86612320..86612394,+!p1@FOXL1!0.69!3.95!FOXL1;;chr10:28032421..28032494,-!p2@MKX!0.69!3.95!MKX;;chr11:46316699..46316719,+!p10@CREB3L1!0.69!3.95!CREB3L1;;chr13:45150455..45150472,-!p8@TSC22D1!0.69!3.95!TSC22D1;;chr2:102091144..102091183,-!p2@RFX8!0.69!3.95!RFX8;;chr2:172967276..172967296,-!p3@DLX2!0.69!3.95!DLX2;;chr6:1389871..1389876,+!p4@FOXF2!0.69!3.95!FOXF2;;chr1:44513995..44514031,+!p1@KLF17!0.69!3.95!KLF17;;chr10:63809013..63809041,+!p3@ARID5B!0.68!23.70!ARID5B;;chr5:133450365..133450444,+!p1@TCF7!0.68!19.75!TCF7;;chr16:54320158..54320200,-!p5@IRX3!0.68!5.71!IRX3;;chr5:176738887..176738934,-!p1@MXD3!0.67!28.53!MXD3;;chr14:73360799..73360817,-!p1@DPF3!0.67!14.49!DPF3;;chr11:65687243..65687276,+!p8@DRAP1!0.67!5.27!DRAP1;;chr2:121493492..121493537,+!p2@GLI2!0.65!6.15!GLI2;;chr16:54320101..54320125,-!p4@IRX3!0.65!5.27!IRX3;;chr11:12696071..12696086,+!p3@TEAD1!0.65!4.83!TEAD1;;chr10:131762504..131762555,-!p1@EBF3!0.65!3.51!EBF3;;chr2:172967323..172967336,-!p4@DLX2!0.65!3.51!DLX2;;chr1:170632683..170632696,+!p12@PRRX1!0.65!3.51!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.65!3.51!PRRX1;;chr17:45928443..45928473,-!p2@SP6!0.65!3.51!SP6;;chr7:28220198..28220269,-!p2@JAZF1!0.64!35.56!JAZF1;;chr12:53625966..53626012,-!p2@RARG!0.64!10.10!RARG;;chr8:72756063..72756125,-!p1@MSC!0.64!7.46!MSC;;chr8:60031762..60031803,-!p3@TOX!0.64!5.27!TOX;;chr3:114343768..114343822,-!p1@ZBTB20!0.63!16.68!ZBTB20;;chr7:44143978..44143989,+!p2@AEBP1!0.63!6.58!AEBP1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.62!37.75!GLIS2;;chr13:45151259..45151326,-!p2@TSC22D1!0.61!21.51!TSC22D1;;chr18:22932080..22932170,-!p1@ZNF521!0.61!15.36!ZNF521;;chr3:37217736..37217753,-!p2@LRRFIP2!0.61!14.93!LRRFIP2;;chr16:31076332..31076388,-!p3@ZNF668!0.61!3.07!ZNF668;;chr10:28034772..28034783,-!p4@MKX!0.61!3.07!MKX;;chr11:65686952..65686975,+!p5@DRAP1!0.60!19.75!DRAP1;;chr8:72756637..72756664,-!p3@MSC!0.60!3.51!MSC;;chr2:145275162..145275202,-!p2@ZEB2!0.59!20.63!ZEB2;;chr19:13134457..13134462,+!p5@NFIX!0.59!5.71!NFIX;;chr10:63809090..63809097,+!p7@ARID5B!0.59!4.39!ARID5B;;chr12:2986206..2986258,-!p2@FOXM1!0.58!20.63!FOXM1;;chr17:7492684..7492778,-!p2@SOX15!0.57!6.58!SOX15;;chr6:45390002..45390023,+!p6@RUNX2!0.57!5.27!RUNX2;;chr8:60031682..60031710,-!p2@TOX!0.57!4.83!TOX;;chr9:16870659..16870675,-!p2@BNC2!0.57!3.51!BNC2;;chr14:62162258..62162269,+!p2@HIF1A!0.56!31.17!HIF1A;;chr3:52001426..52001447,-!p3@PCBP4!0.56!8.78!PCBP4;;chr16:54320675..54320715,-!p1@IRX3!0.56!6.58!IRX3;;chr2:185463247..185463263,+!p1@ZNF804A!0.56!5.27!ZNF804A;;chr19:47922750..47922795,-!p1@MEIS3!0.56!4.83!MEIS3;;chr1:47903709..47903764,+!p1@BC169308!0.56!3.07!FOXD2;;chr19:47523058..47523114,+!p1@NPAS1!0.56!2.63!NPAS1;;chr19:47910182..47910187,-!p3@MEIS3!0.56!2.63!MEIS3;;chr20:55205791..55205817,+!p3@TFAP2C!0.56!2.63!TFAP2C;;chr20:55205825..55205847,+!p2@TFAP2C!0.56!2.63!TFAP2C;;chr15:80843484..80843499,+!p5@ARNT2!0.56!2.63!ARNT2;;chr11:46333934..46333963,+!p5@CREB3L1!0.56!2.63!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.56!2.63!TBX3;;chr2:172967353..172967365,-!p5@DLX2!0.56!2.63!DLX2;;chr2:46524537..46524553,+!p1@EPAS1!0.55!318.70!EPAS1;;chr14:75894714..75894733,+!p1@JDP2!0.55!92.19!JDP2;;chr3:71179699..71179744,-!p2@FOXP1!0.55!23.70!FOXP1;;chr16:54964740..54964789,+!p1@IRX5!0.54!3.95!IRX5;;chr11:65686776..65686787,+!p9@DRAP1!0.54!3.07!DRAP1;;chr13:74708372..74708409,-!p4@KLF12!0.53!6.58!KLF12;;chr8:67525443..67525459,-!p2@MYBL1!0.53!3.95!MYBL1;;chr15:67357924..67357952,+!p2@SMAD3!0.52!19.75!SMAD3;;chr3:141121847..141121868,+!p5@ZBTB38!0.52!3.95!ZBTB38;;chr13:74708475..74708499,-!p5@KLF12!0.51!6.15!KLF12;;chr5:139487608..139487663,+!p3@PURA!0.51!5.71!PURA;;chr1:25256756..25256774,-!p1@RUNX3!0.51!4.83!RUNX3;;chr9:16870710..16870763,-!p1@BNC2!0.51!4.39!BNC2;;chr7:44143997..44144008,+!p3@AEBP1!0.51!3.07!AEBP1;;chr11:46299186..46299195,+!p3@CREB3L1!0.51!2.63!CREB3L1;;chr11:12695944..12695989,+!p1@TEAD1!0.50!101.84!TEAD1;;chr11:65667884..65667895,-!p2@FOSL1!0.50!10.54!FOSL1;;chr13:45151403..45151433,-!p5@TSC22D1!0.50!5.71!TSC22D1;;chr12:66218212..66218244,+!p5@HMGA2!0.50!3.51!HMGA2;;chr12:80085255..80085284,-!p9@PAWR!0.50!3.51!PAWR;;chr19:45260775..45260838,+!p5@BCL3!0.50!3.07!BCL3;;chr10:31607702..31607755,+!p3@ZEB1!0.50!2.63!ZEB1;;chr10:28035133..28035148,-!p3@MKX!0.50!2.19!MKX;;chr16:54319010..54319041,-!p8@IRX3!0.50!2.19!IRX3;;chr16:86600458..86600461,+!p3@FOXC2!0.50!2.19!FOXC2;;chr2:172949532..172949541,+!p6@DLX1!0.50!2.19!DLX1;;chr1:170633194..1706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| |expression_enrichment_score=chr1:170633348..170633399,+!p2@PRRX1!1.87!98.77!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.80!62.77!PRRX2;;chr6:1389789..1389821,+!p1@FOXF2!1.76!77.26!FOXF2;;chr9:132427972..132428056,+!p1@PRRX2!1.75!71.11!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.74!142.67!TWIST1;;chr16:86544113..86544145,+!p1@FOXF1!1.73!64.97!FOXF1;;chr10:28034739..28034756,-!p1@MKX!1.70!49.17!MKX;;chr1:170632285..170632309,+!p1@PRRX1!1.68!53.12!PRRX1;;chr14:61116183..61116208,-!p1@SIX1!1.59!138.28!SIX1;;chr15:57511609..57511651,+!p2@TCF12!1.59!61.90!TCF12;;chr2:200322654..200322707,-!p2@SATB2!1.54!48.73!SATB2;;chr11:46299199..46299233,+!p1@CREB3L1!1.51!157.59!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!1.46!32.05!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!1.42!72.43!MSX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.41!41.26!CREB3L1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.41!24.58!ZBED1;;chr6:45296048..45296082,+!p1@RUNX2!1.39!27.22!RUNX2;;chr7:96654133..96654150,-!p1@DLX5!1.38!23.27!DLX5;;chr9:96717629..96717644,-!p1@BARX1!1.38!22.83!BARX1;;chr2:19558373..19558392,-!p1@OSR1!1.37!60.58!OSR1;;chr14:37131058..37131139,+!p1@PAX9!1.37!22.39!PAX9;;chr2:200323414..200323455,-!p1@SATB2!1.33!43.02!SATB2;;chr6:1389824..1389840,+!p3@FOXF2!1.28!18.00!FOXF2;;chr5:72744594..72744609,-!p1@FOXD1!1.26!78.14!FOXD1;;chr17:59477233..59477263,+!p1@TBX2!1.17!42.14!TBX2;;chr2:45236540..45236577,-!p1@SIX2!1.15!13.17!SIX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.11!12.73!GLIS1;;chr11:65686732..65686756,+!p2@DRAP1!1.09!48.29!DRAP1;;chr1:170633058..170633084,+!p5@PRRX1!1.09!11.41!PRRX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.05!13.17!TFAP2C;;chr2:172949484..172949522,+!p1@DLX1!1.05!10.10!DLX1;;chr11:65686802..65686818,+!p6@DRAP1!1.04!17.56!DRAP1;;chr14:61116168..61116180,-!p2@SIX1!1.02!10.97!SIX1;;chr1:170632959..170632987,+!p4@PRRX1!1.02!10.54!PRRX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.00!14.93!FOXQ1;;chr1:170632137..170632172,+!p10@PRRX1!0.99!8.78!PRRX1;;chr5:321810..321877,+!p1@AHRR!0.98!27.66!AHRR;;chr8:93074803..93074845,-!p1@RUNX1T1!0.97!8.34!RUNX1T1;;chr7:44143925..44143970,+!p1@AEBP1!0.95!182.18!AEBP1;;chr2:172950227..172950249,+!p2@DLX1!0.95!7.90!DLX1;;chr7:19157043..19157088,-!p2@TWIST1!0.94!19.75!TWIST1;;chr2:172967242..172967265,-!p2@DLX2!0.93!7.46!DLX2;;chr14:24837368..24837401,+!p1@NFATC4!0.92!17.56!NFATC4;;chr12:53614115..53614154,-!p1@RARG!0.89!37.75!RARG;;chr11:65687362..65687436,+!p3@DRAP1!0.88!31.61!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!0.88!21.95!TWIST2;;chr1:170632250..170632277,+!p7@PRRX1!0.88!6.58!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.88!6.58!LHX8;;chr11:65687222..65687240,+!p7@DRAP1!0.87!8.34!DRAP1;;chr8:49833978..49833996,-!p1@SNAI2!0.85!134.33!SNAI2;;chr16:54320617..54320643,-!p3@IRX3!0.85!7.90!IRX3;;chr11:46299443..46299459,+!p4@CREB3L1!0.85!6.15!CREB3L1;;chr1:170632723..170632739,+!p8@PRRX1!0.85!6.15!PRRX1;;chr8:49833948..49833973,-!p2@SNAI2!0.84!39.95!SNAI2;;chr16:86600426..86600441,+!p1@FOXC2!0.83!14.93!FOXC2;;chr2:239756739..239756755,+!p2@TWIST2!0.83!10.10!TWIST2;;chr19:31840130..31840160,-!p2@TSHZ3!0.83!9.22!TSHZ3;;chr8:23564065..23564087,-!p1@NKX2-6!0.83!5.71!NKX2-6;;chr1:25291475..25291511,-!p2@RUNX3!0.83!5.71!RUNX3;;chr11:65687158..65687216,+!p4@DRAP1!0.80!32.48!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.22!FOXD1;;chr15:83953397..83953425,-!p1@BNC1!0.80!6.15!BNC1;;chr2:200322229..200322251,-!p3@SATB2!0.80!5.27!SATB2;;chr1:170632477..170632506,+!p6@PRRX1!0.80!5.27!PRRX1;;chr9:96717678..96717689,-!p2@BARX1!0.80!5.27!BARX1;;chr4:81118647..81118666,+!p1@PRDM8!0.79!7.02!PRDM8;;chr2:172967621..172967637,-!p1@DLX2!0.78!14.49!DLX2;;chr12:80085061..80085119,-!p6@PAWR!0.78!8.34!PAWR;;chr16:54320646..54320672,-!p2@IRX3!0.78!7.90!IRX3;;chr10:63809106..63809127,+!p1@ARID5B!0.77!72.87!ARID5B;;chr14:37132241..37132304,+!p3@PAX9!0.77!4.83!PAX9;;chr5:139492456..139492489,+!p7@PURA!0.77!4.83!PURA;;chr22:19748231..19748317,+!p1@TBX1!0.77!4.83!TBX1;;chr2:200322259..200322280,-!p5@SATB2!0.77!4.83!SATB2;;chr1:170632115..170632136,+!p9@PRRX1!0.77!4.83!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!0.77!4.83!PRRX1;;chr1:75602043..75602093,+!p1@LHX8!0.77!4.83!LHX8;;chr12:66218255..66218304,+!p3@HMGA2!0.76!13.61!HMGA2;;chr5:72743793..72743855,-!p4@FOXD1!0.76!5.71!FOXD1;;chr12:66218598..66218645,+!p2@HMGA2!0.75!23.70!HMGA2;;chr13:74708029..74708077,-!p2@KLF12!0.74!14.05!KLF12;;chr6:45390025..45390076,+!p2@RUNX2!0.73!11.41!RUNX2;;chrX:66763856..66763896,+!p1@AR!0.73!6.58!AR;;chr6:45390077..45390105,+!p9@RUNX2!0.73!5.71!RUNX2;;chr6:1389989..1390019,+!p2@FOXF2!0.73!4.39!FOXF2;;chr7:96654026..96654061,-!p2@DLX5!0.73!4.39!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.73!4.39!TOX;;chr8:93074848..93074871,-!p3@RUNX1T1!0.73!4.39!RUNX1T1;;chr15:57511589..57511608,+!p4@TCF12!0.73!4.39!TCF12;;chr1:170632439..170632465,+!p11@PRRX1!0.73!4.39!PRRX1;;chr12:80085120..80085156,-!p14@PAWR!0.73!4.39!PAWR;;chr14:37126765..37126799,+!p2@PAX9!0.73!4.39!PAX9;;chr3:150126759..150126784,+!p2@TSC22D2!0.72!21.51!TSC22D2;;chr8:106330656..106330684,+!p1@ZFPM2!0.71!11.85!ZFPM2;;chrX:66763815..66763854,+!p2@AR!0.71!5.71!AR;;chr17:59477275..59477286,+!p3@TBX2!0.71!5.71!TBX2;;chr5:72744562..72744573,-!p3@FOXD1!0.71!5.27!FOXD1;;chr17:59477197..59477212,+!p2@TBX2!0.70!7.46!TBX2;;chr5:174151553..174151610,+!p1@MSX2!0.70!7.02!MSX2;;chr6:34204921..34204939,+!p3@HMGA1!0.69!135.21!HMGA1;;chr12:115121962..115121987,-!p1@TBX3!0.69!36.87!TBX3;;chr17:17726907..17726958,-!p2@SREBF1!0.69!27.22!SREBF1;;chr15:42749722..42749739,-!p2@ZFP106!0.69!7.46!ZFP106;;chr16:86612320..86612394,+!p1@FOXL1!0.69!3.95!FOXL1;;chr10:28032421..28032494,-!p2@MKX!0.69!3.95!MKX;;chr11:46316699..46316719,+!p10@CREB3L1!0.69!3.95!CREB3L1;;chr13:45150455..45150472,-!p8@TSC22D1!0.69!3.95!TSC22D1;;chr2:102091144..102091183,-!p2@RFX8!0.69!3.95!RFX8;;chr2:172967276..172967296,-!p3@DLX2!0.69!3.95!DLX2;;chr6:1389871..1389876,+!p4@FOXF2!0.69!3.95!FOXF2;;chr1:44513995..44514031,+!p1@KLF17!0.69!3.95!KLF17;;chr10:63809013..63809041,+!p3@ARID5B!0.68!23.70!ARID5B;;chr5:133450365..133450444,+!p1@TCF7!0.68!19.75!TCF7;;chr16:54320158..54320200,-!p5@IRX3!0.68!5.71!IRX3;;chr5:176738887..176738934,-!p1@MXD3!0.67!28.53!MXD3;;chr14:73360799..73360817,-!p1@DPF3!0.67!14.49!DPF3;;chr11:65687243..65687276,+!p8@DRAP1!0.67!5.27!DRAP1;;chr2:121493492..121493537,+!p2@GLI2!0.65!6.15!GLI2;;chr16:54320101..54320125,-!p4@IRX3!0.65!5.27!IRX3;;chr11:12696071..12696086,+!p3@TEAD1!0.65!4.83!TEAD1;;chr10:131762504..131762555,-!p1@EBF3!0.65!3.51!EBF3;;chr2:172967323..172967336,-!p4@DLX2!0.65!3.51!DLX2;;chr1:170632683..170632696,+!p12@PRRX1!0.65!3.51!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.65!3.51!PRRX1;;chr17:45928443..45928473,-!p2@SP6!0.65!3.51!SP6;;chr7:28220198..28220269,-!p2@JAZF1!0.64!35.56!JAZF1;;chr12:53625966..53626012,-!p2@RARG!0.64!10.10!RARG;;chr8:72756063..72756125,-!p1@MSC!0.64!7.46!MSC;;chr8:60031762..60031803,-!p3@TOX!0.64!5.27!TOX;;chr3:114343768..114343822,-!p1@ZBTB20!0.63!16.68!ZBTB20;;chr7:44143978..44143989,+!p2@AEBP1!0.63!6.58!AEBP1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.62!37.75!GLIS2;;chr13:45151259..45151326,-!p2@TSC22D1!0.61!21.51!TSC22D1;;chr18:22932080..22932170,-!p1@ZNF521!0.61!15.36!ZNF521;;chr3:37217736..37217753,-!p2@LRRFIP2!0.61!14.93!LRRFIP2;;chr16:31076332..31076388,-!p3@ZNF668!0.61!3.07!ZNF668;;chr10:28034772..28034783,-!p4@MKX!0.61!3.07!MKX;;chr11:65686952..65686975,+!p5@DRAP1!0.60!19.75!DRAP1;;chr8:72756637..72756664,-!p3@MSC!0.60!3.51!MSC;;chr2:145275162..145275202,-!p2@ZEB2!0.59!20.63!ZEB2;;chr19:13134457..13134462,+!p5@NFIX!0.59!5.71!NFIX;;chr10:63809090..63809097,+!p7@ARID5B!0.59!4.39!ARID5B;;chr12:2986206..2986258,-!p2@FOXM1!0.58!20.63!FOXM1;;chr17:7492684..7492778,-!p2@SOX15!0.57!6.58!SOX15;;chr6:45390002..45390023,+!p6@RUNX2!0.57!5.27!RUNX2;;chr8:60031682..60031710,-!p2@TOX!0.57!4.83!TOX;;chr9:16870659..16870675,-!p2@BNC2!0.57!3.51!BNC2;;chr14:62162258..62162269,+!p2@HIF1A!0.56!31.17!HIF1A;;chr3:52001426..52001447,-!p3@PCBP4!0.56!8.78!PCBP4;;chr16:54320675..54320715,-!p1@IRX3!0.56!6.58!IRX3;;chr2:185463247..185463263,+!p1@ZNF804A!0.56!5.27!ZNF804A;;chr19:47922750..47922795,-!p1@MEIS3!0.56!4.83!MEIS3;;chr1:47903709..47903764,+!p1@BC169308!0.56!3.07!FOXD2;;chr19:47523058..47523114,+!p1@NPAS1!0.56!2.63!NPAS1;;chr19:47910182..47910187,-!p3@MEIS3!0.56!2.63!MEIS3;;chr20:55205791..55205817,+!p3@TFAP2C!0.56!2.63!TFAP2C;;chr20:55205825..55205847,+!p2@TFAP2C!0.56!2.63!TFAP2C;;chr15:80843484..80843499,+!p5@ARNT2!0.56!2.63!ARNT2;;chr11:46333934..46333963,+!p5@CREB3L1!0.56!2.63!CREB3L1;;chr12:115122318..115122331,-!p2@TBX3!0.56!2.63!TBX3;;chr2:172967353..172967365,-!p5@DLX2!0.56!2.63!DLX2;;chr2:46524537..46524553,+!p1@EPAS1!0.55!318.70!EPAS1;;chr14:75894714..75894733,+!p1@JDP2!0.55!92.19!JDP2;;chr3:71179699..71179744,-!p2@FOXP1!0.55!23.70!FOXP1;;chr16:54964740..54964789,+!p1@IRX5!0.54!3.95!IRX5;;chr11:65686776..65686787,+!p9@DRAP1!0.54!3.07!DRAP1;;chr13:74708372..74708409,-!p4@KLF12!0.53!6.58!KLF12;;chr8:67525443..67525459,-!p2@MYBL1!0.53!3.95!MYBL1;;chr15:67357924..67357952,+!p2@SMAD3!0.52!19.75!SMAD3;;chr3:141121847..141121868,+!p5@ZBTB38!0.52!3.95!ZBTB38;;chr13:74708475..74708499,-!p5@KLF12!0.51!6.15!KLF12;;chr5:139487608..139487663,+!p3@PURA!0.51!5.71!PURA;;chr1:25256756..25256774,-!p1@RUNX3!0.51!4.83!RUNX3;;chr9:16870710..16870763,-!p1@BNC2!0.51!4.39!BNC2;;chr7:44143997..44144008,+!p3@AEBP1!0.51!3.07!AEBP1;;chr11:46299186..46299195,+!p3@CREB3L1!0.51!2.63!CREB3L1;;chr11:12695944..12695989,+!p1@TEAD1!0.50!101.84!TEAD1;;chr11:65667884..65667895,-!p2@FOSL1!0.50!10.54!FOSL1;;chr13:45151403..45151433,-!p5@TSC22D1!0.50!5.71!TSC22D1;;chr12:66218212..66218244,+!p5@HMGA2!0.50!3.51!HMGA2;;chr12:80085255..80085284,-!p9@PAWR!0.50!3.51!PAWR;;chr19:45260775..45260838,+!p5@BCL3!0.50!3.07!BCL3;;chr10:31607702..31607755,+!p3@ZEB1!0.50!2.63!ZEB1;;chr10:28035133..28035148,-!p3@MKX!0.50!2.19!MKX;;chr16:54319010..54319041,-!p8@IRX3!0.50!2.19!IRX3;;chr16:86600458..86600461,+!p3@FOXC2!0.50!2.19!FOXC2;;chr2:172949532..172949541,+!p6@DLX1!0.50!2.19!DLX1;;chr1:170633194..1706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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137 | |||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor4%2520%2528PL29%2529.CNhs12493.11223-116B8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11223-116B8 | |id=FF:11223-116B8 | ||
|is_a=EFO:0002091;;FF:0000067 | |is_a=EFO:0002091;;FF:0000067 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12493 | |||
|library_id_phase_based=2:CNhs12493 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11223 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11223 | |||
|name=Fibroblast - Periodontal Ligament, donor4 (PL29) | |name=Fibroblast - Periodontal Ligament, donor4 (PL29) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12493,LSID916,release011,COMPLETED | |profile_hcage=CNhs12493,LSID916,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 59: | Line 79: | ||
|rna_weight_ug=22.65912 | |rna_weight_ug=22.65912 | ||
|sample_age=18 | |sample_age=18 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 101: | ||
|top_motifs=PDX1:1.533313029;TAL1_TCF{3,4,12}:1.38356625144;PPARG:1.31470001318;NR3C1:1.18310624447;TFAP4:1.17585445476;ZNF238:1.12973292315;GFI1:1.09724675028;TFDP1:1.06949365967;GZF1:1.00086660726;MYBL2:0.973176801433;TFCP2:0.972194719703;NKX3-1:0.953016560088;ZIC1..3:0.948891272274;PAX1,9:0.917776764578;EBF1:0.907973333242;TEAD1:0.90695878266;PAX8:0.875166507646;GLI1..3:0.826628163716;RXR{A,B,G}:0.818502214549;ESR1:0.804928869515;MAZ:0.777822333297;ALX4:0.741848472703;SOX17:0.737207105506;HMGA1,2:0.732633734192;SRF:0.730020295435;CDC5L:0.693435057697;NFATC1..3:0.6913249981;HES1:0.686215891702;TLX1..3_NFIC{dimer}:0.663848717184;NANOG{mouse}:0.649437484418;GTF2A1,2:0.635313370871;TP53:0.629166970465;GATA4:0.619950116257;HAND1,2:0.61965402632;TBX4,5:0.618315531371;MZF1:0.596005698432;GTF2I:0.589411037947;NKX2-3_NKX2-5:0.560094069903;MTE{core}:0.548159790956;FOXL1:0.530007397089;KLF4:0.524342226678;NKX2-2,8:0.517385357656;LHX3,4:0.509841765161;HOX{A5,B5}:0.508416876957;MYB:0.496478772752;GCM1,2:0.491021431603;SPZ1:0.488300688725;PATZ1:0.468050227733;UFEwm:0.466896221914;EVI1:0.46389480074;MAFB:0.454624034161;NFE2L2:0.434978329754;PRDM1:0.427702307835;ADNP_IRX_SIX_ZHX:0.420632083563;TFAP2B:0.409622343853;GFI1B:0.407113636369;XBP1:0.406054654895;NFIX:0.390512090007;FOXA2:0.387228965654;HBP1_HMGB_SSRP1_UBTF:0.384100289697;XCPE1{core}:0.378326321592;ZNF423:0.367120017865;MTF1:0.366712080872;TFAP2{A,C}:0.362533133446;NKX6-1,2:0.357111872643;SMAD1..7,9:0.34467663419;POU3F1..4:0.339589429278;EGR1..3:0.334371301157;EN1,2:0.316824707752;POU5F1:0.308480262326;HIC1:0.287458291364;POU1F1:0.271701619931;ZBTB6:0.268419814816;NKX3-2:0.254815159138;E2F1..5:0.239326912239;SOX5:0.229257908355;ZNF148:0.210990713273;LEF1_TCF7_TCF7L1,2:0.210614627612;BACH2:0.202952257696;ARID5B:0.188613396812;RREB1:0.186967167634;ZFP161:0.17874289668;NFE2L1:0.177007385336;T:0.175737592408;TOPORS:0.172007629849;AHR_ARNT_ARNT2:0.165177101621;HMX1:0.153220093686;SP1:0.148449569124;JUN:0.14621738637;NHLH1,2:0.138784427334;PAX4:0.0954184066512;PAX3,7:0.0901917850792;IRF1,2:0.0810654804638;FOS_FOS{B,L1}_JUN{B,D}:0.0632424088709;MEF2{A,B,C,D}:0.0631349596664;NR1H4:0.0570050646324;HLF:0.0551035360814;PRRX1,2:0.0332526047311;MED-1{core}:0.0309848001668;PAX5:0.0118745748314;NFY{A,B,C}:0.00940242546729;MYFfamily:0.00702788727009;FOXO1,3,4:0.00682865547053;POU6F1:-0.00073601216059;FOSL2:-0.0137543354676;RXRA_VDR{dimer}:-0.0156129029771;RUNX1..3:-0.0285714693213;NFE2:-0.0444697290066;ATF6:-0.0493830682647;HNF1A:-0.0750183998347;HOX{A4,D4}:-0.0779160718314;TBP:-0.101117692283;CREB1:-0.10865302686;YY1:-0.120940668656;NFIL3:-0.122344059436;DMAP1_NCOR{1,2}_SMARC:-0.137021458727;CEBPA,B_DDIT3:-0.138907851376;NR5A1,2:-0.140239213641;DBP:-0.148557781376;FOXD3:-0.151628332447;IKZF1:-0.154648081102;ONECUT1,2:-0.161629486649;NRF1:-0.175176685143;AIRE:-0.183039875062;STAT2,4,6:-0.194138428608;ZNF143:-0.211222178959;TGIF1:-0.232722241933;HOX{A6,A7,B6,B7}:-0.257540505719;NR6A1:-0.267808146277;ELK1,4_GABP{A,B1}:-0.279537990273;STAT5{A,B}:-0.282250825576;RFX1:-0.306411231195;SOX{8,9,10}:-0.308296214806;ZNF384:-0.311509588571;CRX:-0.316181741667;POU2F1..3:-0.320201766314;FOX{F1,F2,J1}:-0.345898926959;SPIB:-0.349329714625;HNF4A_NR2F1,2:-0.352853237807;AR:-0.358238750178;SOX2:-0.362695415337;CUX2:-0.366812970917;HSF1,2:-0.368950796056;BREu{core}:-0.36960842474;NKX2-1,4:-0.371120447643;SREBF1,2:-0.378955454157;GATA6:-0.406628136449;NFKB1_REL_RELA:-0.407055404715;IRF7:-0.415054030864;bHLH_family:-0.417639011963;ELF1,2,4:-0.419550012174;OCT4_SOX2{dimer}:-0.420989851368;REST:-0.423022650304;PITX1..3:-0.436281682941;FOXM1:-0.456100029315;ETS1,2:-0.457866728739;EP300:-0.476866033354;FOX{I1,J2}:-0.488656257879;NANOG:-0.501419050041;RBPJ:-0.517739719163;SPI1:-0.525648596065;VSX1,2:-0.531900998368;ATF5_CREB3:-0.544451140301;RORA:-0.551833612772;RFX2..5_RFXANK_RFXAP:-0.576370241978;FOX{D1,D2}:-0.576510528373;ESRRA:-0.577332439336;ALX1:-0.587115817403;PAX6:-0.606631671066;PBX1:-0.619535456302;IKZF2:-0.641218308761;FOXN1:-0.647734655253;FOXP1:-0.651134588808;PAX2:-0.726444524397;BPTF:-0.765919661361;FOXQ1:-0.806520029535;LMO2:-0.81682660555;STAT1,3:-0.823327120951;ATF4:-0.833613859373;SNAI1..3:-0.859249797235;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.870292502479;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.954073312245;HOXA9_MEIS1:-0.96761014699;ZEB1:-0.999540650662;ATF2:-1.01917339298;MYOD1:-1.05707992217;ZBTB16:-1.07122229716;TLX2:-1.0957319341;HIF1A:-1.10291775536;CDX1,2,4:-1.13509549984;TEF:-1.23827556732;FOXP3:-1.38407570635 | |top_motifs=PDX1:1.533313029;TAL1_TCF{3,4,12}:1.38356625144;PPARG:1.31470001318;NR3C1:1.18310624447;TFAP4:1.17585445476;ZNF238:1.12973292315;GFI1:1.09724675028;TFDP1:1.06949365967;GZF1:1.00086660726;MYBL2:0.973176801433;TFCP2:0.972194719703;NKX3-1:0.953016560088;ZIC1..3:0.948891272274;PAX1,9:0.917776764578;EBF1:0.907973333242;TEAD1:0.90695878266;PAX8:0.875166507646;GLI1..3:0.826628163716;RXR{A,B,G}:0.818502214549;ESR1:0.804928869515;MAZ:0.777822333297;ALX4:0.741848472703;SOX17:0.737207105506;HMGA1,2:0.732633734192;SRF:0.730020295435;CDC5L:0.693435057697;NFATC1..3:0.6913249981;HES1:0.686215891702;TLX1..3_NFIC{dimer}:0.663848717184;NANOG{mouse}:0.649437484418;GTF2A1,2:0.635313370871;TP53:0.629166970465;GATA4:0.619950116257;HAND1,2:0.61965402632;TBX4,5:0.618315531371;MZF1:0.596005698432;GTF2I:0.589411037947;NKX2-3_NKX2-5:0.560094069903;MTE{core}:0.548159790956;FOXL1:0.530007397089;KLF4:0.524342226678;NKX2-2,8:0.517385357656;LHX3,4:0.509841765161;HOX{A5,B5}:0.508416876957;MYB:0.496478772752;GCM1,2:0.491021431603;SPZ1:0.488300688725;PATZ1:0.468050227733;UFEwm:0.466896221914;EVI1:0.46389480074;MAFB:0.454624034161;NFE2L2:0.434978329754;PRDM1:0.427702307835;ADNP_IRX_SIX_ZHX:0.420632083563;TFAP2B:0.409622343853;GFI1B:0.407113636369;XBP1:0.406054654895;NFIX:0.390512090007;FOXA2:0.387228965654;HBP1_HMGB_SSRP1_UBTF:0.384100289697;XCPE1{core}:0.378326321592;ZNF423:0.367120017865;MTF1:0.366712080872;TFAP2{A,C}:0.362533133446;NKX6-1,2:0.357111872643;SMAD1..7,9:0.34467663419;POU3F1..4:0.339589429278;EGR1..3:0.334371301157;EN1,2:0.316824707752;POU5F1:0.308480262326;HIC1:0.287458291364;POU1F1:0.271701619931;ZBTB6:0.268419814816;NKX3-2:0.254815159138;E2F1..5:0.239326912239;SOX5:0.229257908355;ZNF148:0.210990713273;LEF1_TCF7_TCF7L1,2:0.210614627612;BACH2:0.202952257696;ARID5B:0.188613396812;RREB1:0.186967167634;ZFP161:0.17874289668;NFE2L1:0.177007385336;T:0.175737592408;TOPORS:0.172007629849;AHR_ARNT_ARNT2:0.165177101621;HMX1:0.153220093686;SP1:0.148449569124;JUN:0.14621738637;NHLH1,2:0.138784427334;PAX4:0.0954184066512;PAX3,7:0.0901917850792;IRF1,2:0.0810654804638;FOS_FOS{B,L1}_JUN{B,D}:0.0632424088709;MEF2{A,B,C,D}:0.0631349596664;NR1H4:0.0570050646324;HLF:0.0551035360814;PRRX1,2:0.0332526047311;MED-1{core}:0.0309848001668;PAX5:0.0118745748314;NFY{A,B,C}:0.00940242546729;MYFfamily:0.00702788727009;FOXO1,3,4:0.00682865547053;POU6F1:-0.00073601216059;FOSL2:-0.0137543354676;RXRA_VDR{dimer}:-0.0156129029771;RUNX1..3:-0.0285714693213;NFE2:-0.0444697290066;ATF6:-0.0493830682647;HNF1A:-0.0750183998347;HOX{A4,D4}:-0.0779160718314;TBP:-0.101117692283;CREB1:-0.10865302686;YY1:-0.120940668656;NFIL3:-0.122344059436;DMAP1_NCOR{1,2}_SMARC:-0.137021458727;CEBPA,B_DDIT3:-0.138907851376;NR5A1,2:-0.140239213641;DBP:-0.148557781376;FOXD3:-0.151628332447;IKZF1:-0.154648081102;ONECUT1,2:-0.161629486649;NRF1:-0.175176685143;AIRE:-0.183039875062;STAT2,4,6:-0.194138428608;ZNF143:-0.211222178959;TGIF1:-0.232722241933;HOX{A6,A7,B6,B7}:-0.257540505719;NR6A1:-0.267808146277;ELK1,4_GABP{A,B1}:-0.279537990273;STAT5{A,B}:-0.282250825576;RFX1:-0.306411231195;SOX{8,9,10}:-0.308296214806;ZNF384:-0.311509588571;CRX:-0.316181741667;POU2F1..3:-0.320201766314;FOX{F1,F2,J1}:-0.345898926959;SPIB:-0.349329714625;HNF4A_NR2F1,2:-0.352853237807;AR:-0.358238750178;SOX2:-0.362695415337;CUX2:-0.366812970917;HSF1,2:-0.368950796056;BREu{core}:-0.36960842474;NKX2-1,4:-0.371120447643;SREBF1,2:-0.378955454157;GATA6:-0.406628136449;NFKB1_REL_RELA:-0.407055404715;IRF7:-0.415054030864;bHLH_family:-0.417639011963;ELF1,2,4:-0.419550012174;OCT4_SOX2{dimer}:-0.420989851368;REST:-0.423022650304;PITX1..3:-0.436281682941;FOXM1:-0.456100029315;ETS1,2:-0.457866728739;EP300:-0.476866033354;FOX{I1,J2}:-0.488656257879;NANOG:-0.501419050041;RBPJ:-0.517739719163;SPI1:-0.525648596065;VSX1,2:-0.531900998368;ATF5_CREB3:-0.544451140301;RORA:-0.551833612772;RFX2..5_RFXANK_RFXAP:-0.576370241978;FOX{D1,D2}:-0.576510528373;ESRRA:-0.577332439336;ALX1:-0.587115817403;PAX6:-0.606631671066;PBX1:-0.619535456302;IKZF2:-0.641218308761;FOXN1:-0.647734655253;FOXP1:-0.651134588808;PAX2:-0.726444524397;BPTF:-0.765919661361;FOXQ1:-0.806520029535;LMO2:-0.81682660555;STAT1,3:-0.823327120951;ATF4:-0.833613859373;SNAI1..3:-0.859249797235;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.870292502479;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.954073312245;HOXA9_MEIS1:-0.96761014699;ZEB1:-0.999540650662;ATF2:-1.01917339298;MYOD1:-1.05707992217;ZBTB16:-1.07122229716;TLX2:-1.0957319341;HIF1A:-1.10291775536;CDX1,2,4:-1.13509549984;TEF:-1.23827556732;FOXP3:-1.38407570635 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11223-116B8;search_select_hide=table117:FF:11223-116B8 | |||
}} | }} | ||
Latest revision as of 16:25, 3 June 2020
| Name: | Fibroblast - Periodontal Ligament, donor4 (PL29) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12493 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12493
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12493
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.241 |
| 10 | 10 | 0.196 |
| 100 | 100 | 0.153 |
| 101 | 101 | 0.298 |
| 102 | 102 | 0.0212 |
| 103 | 103 | 0.878 |
| 104 | 104 | 0.546 |
| 105 | 105 | 0.702 |
| 106 | 106 | 0.872 |
| 107 | 107 | 0.079 |
| 108 | 108 | 0.633 |
| 109 | 109 | 0.603 |
| 11 | 11 | 0.706 |
| 110 | 110 | 0.495 |
| 111 | 111 | 0.297 |
| 112 | 112 | 0.745 |
| 113 | 113 | 0.472 |
| 114 | 114 | 0.333 |
| 115 | 115 | 0.559 |
| 116 | 116 | 0.457 |
| 117 | 117 | 0.0291 |
| 118 | 118 | 0.0686 |
| 119 | 119 | 0.518 |
| 12 | 12 | 0.322 |
| 120 | 120 | 0.479 |
| 121 | 121 | 0.764 |
| 122 | 122 | 0.067 |
| 123 | 123 | 0.0101 |
| 124 | 124 | 0.713 |
| 125 | 125 | 0.942 |
| 126 | 126 | 0.157 |
| 127 | 127 | 0.834 |
| 128 | 128 | 0.193 |
| 129 | 129 | 0.567 |
| 13 | 13 | 0.0348 |
| 130 | 130 | 0.134 |
| 131 | 131 | 0.963 |
| 132 | 132 | 0.576 |
| 133 | 133 | 0.612 |
| 134 | 134 | 0.0389 |
| 135 | 135 | 0.912 |
| 136 | 136 | 0.86 |
| 137 | 137 | 0.593 |
| 138 | 138 | 0.463 |
| 139 | 139 | 0.00324 |
| 14 | 14 | 0.221 |
| 140 | 140 | 0.907 |
| 141 | 141 | 0.0159 |
| 142 | 142 | 0.658 |
| 143 | 143 | 0.639 |
| 144 | 144 | 0.981 |
| 145 | 145 | 0.781 |
| 146 | 146 | 0.631 |
| 147 | 147 | 0.246 |
| 148 | 148 | 0.402 |
| 149 | 149 | 0.488 |
| 15 | 15 | 0.239 |
| 150 | 150 | 0.461 |
| 151 | 151 | 0.57 |
| 152 | 152 | 0.0593 |
| 153 | 153 | 0.995 |
| 154 | 154 | 0.663 |
| 155 | 155 | 6.96266e-4 |
| 156 | 156 | 0.906 |
| 157 | 157 | 0.0605 |
| 158 | 158 | 0.00783 |
| 159 | 159 | 0.463 |
| 16 | 16 | 0.662 |
| 160 | 160 | 0.853 |
| 161 | 161 | 0.359 |
| 162 | 162 | 0.12 |
| 163 | 163 | 0.64 |
| 164 | 164 | 0.0232 |
| 165 | 165 | 0.176 |
| 166 | 166 | 0.0454 |
| 167 | 167 | 0.375 |
| 168 | 168 | 0.406 |
| 169 | 169 | 0.594 |
| 17 | 17 | 0.916 |
| 18 | 18 | 0.365 |
| 19 | 19 | 0.248 |
| 2 | 2 | 0.236 |
| 20 | 20 | 0.154 |
| 21 | 21 | 0.839 |
| 22 | 22 | 0.608 |
| 23 | 23 | 0.304 |
| 24 | 24 | 0.557 |
| 25 | 25 | 0.328 |
| 26 | 26 | 0.624 |
| 27 | 27 | 0.733 |
| 28 | 28 | 0.188 |
| 29 | 29 | 0.0353 |
| 3 | 3 | 0.335 |
| 30 | 30 | 0.147 |
| 31 | 31 | 0.974 |
| 32 | 32 | 3.1588e-7 |
| 33 | 33 | 0.94 |
| 34 | 34 | 0.966 |
| 35 | 35 | 0.197 |
| 36 | 36 | 0.048 |
| 37 | 37 | 0.633 |
| 38 | 38 | 0.218 |
| 39 | 39 | 0.924 |
| 4 | 4 | 0.85 |
| 40 | 40 | 0.164 |
| 41 | 41 | 0.766 |
| 42 | 42 | 0.476 |
| 43 | 43 | 0.443 |
| 44 | 44 | 0.222 |
| 45 | 45 | 0.844 |
| 46 | 46 | 0.973 |
| 47 | 47 | 0.191 |
| 48 | 48 | 0.45 |
| 49 | 49 | 0.255 |
| 5 | 5 | 0.899 |
| 50 | 50 | 0.772 |
| 51 | 51 | 0.985 |
| 52 | 52 | 0.615 |
| 53 | 53 | 0.462 |
| 54 | 54 | 0.948 |
| 55 | 55 | 0.608 |
| 56 | 56 | 0.897 |
| 57 | 57 | 0.915 |
| 58 | 58 | 0.229 |
| 59 | 59 | 0.402 |
| 6 | 6 | 0.689 |
| 60 | 60 | 0.575 |
| 61 | 61 | 0.58 |
| 62 | 62 | 0.58 |
| 63 | 63 | 0.9 |
| 64 | 64 | 0.166 |
| 65 | 65 | 0.901 |
| 66 | 66 | 0.222 |
| 67 | 67 | 0.298 |
| 68 | 68 | 0.214 |
| 69 | 69 | 0.864 |
| 7 | 7 | 0.141 |
| 70 | 70 | 0.35 |
| 71 | 71 | 0.307 |
| 72 | 72 | 0.199 |
| 73 | 73 | 0.614 |
| 74 | 74 | 0.41 |
| 75 | 75 | 0.167 |
| 76 | 76 | 0.0968 |
| 77 | 77 | 0.321 |
| 78 | 78 | 0.0726 |
| 79 | 79 | 0.016 |
| 8 | 8 | 0.959 |
| 80 | 80 | 0.998 |
| 81 | 81 | 0.638 |
| 82 | 82 | 0.529 |
| 83 | 83 | 0.277 |
| 84 | 84 | 0.689 |
| 85 | 85 | 0.42 |
| 86 | 86 | 0.558 |
| 87 | 87 | 0.446 |
| 88 | 88 | 0.532 |
| 89 | 89 | 0.15 |
| 9 | 9 | 0.333 |
| 90 | 90 | 0.513 |
| 91 | 91 | 0.695 |
| 92 | 92 | 0.498 |
| 93 | 93 | 0.813 |
| 94 | 94 | 0.738 |
| 95 | 95 | 0.753 |
| 96 | 96 | 0.53 |
| 97 | 97 | 0.428 |
| 98 | 98 | 0.037 |
| 99 | 99 | 0.00183 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12493
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000067 human fibroblast of periodontium sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
