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{{f5samples
{{f5samples
|id=FF:11319-117D5
|DRA_sample_Accession=CAGE@SAMD00005857
|name=Fibroblast - Periodontal Ligament, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005857
|sample_id=11319
|accession_numbers=CAGE;DRX008275;DRR009147;DRZ000572;DRZ001957;DRZ011922;DRZ013307
|rna_tube_id=117D5
|accession_numbers_RNASeq=sRNA-Seq;DRX037044;DRR041410;DRZ007052
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129
|rna_position=D5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=1847
|rna_catalog_number=SC2635
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=periodontal ligament
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=0.665
|sample_note=
|profile_hcage=CNhs11962,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10004,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002556
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0001758,UBERON:0002384,UBERON:0003672
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!2.02!2932.78!HMGA1;;chr1:170632285..170632309,+!p1@PRRX1!1.87!82.70!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.83!170.41!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.76!75.82!PRRX1;;chr14:37131058..37131139,+!p1@PAX9!1.74!53.43!PAX9;;chr14:61116183..61116208,-!p1@SIX1!1.73!192.18!SIX1;;chr16:86544113..86544145,+!p1@FOXF1!1.68!57.18!FOXF1;;chr4:174451370..174451387,-!p1@HAND2!1.67!45.42!HAND2;;chr6:1389789..1389821,+!p1@FOXF2!1.60!52.30!FOXF2;;chr12:66218212..66218244,+!p5@HMGA2!1.57!52.05!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.55!154.65!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.51!51.55!TCF12;;chr12:66218183..66218209,+!p4@HMGA2!1.50!57.55!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.46!74.95!TWIST1;;chr4:4861385..4861398,+!p1@MSX1!1.40!70.44!MSX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.34!26.65!TFAP2C;;chr16:86600426..86600441,+!p1@FOXC2!1.32!48.92!FOXC2;;chr2:200322654..200322707,-!p2@SATB2!1.32!29.03!SATB2;;chr1:170633262..170633285,+!p3@PRRX1!1.29!20.89!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!1.26!17.27!PAX3;;chr17:59477233..59477263,+!p1@TBX2!1.24!49.67!TBX2;;chr12:115122318..115122331,-!p2@TBX3!1.24!16.52!TBX3;;chr2:239756671..239756732,+!p1@TWIST2!1.23!50.42!TWIST2;;chr2:45236540..45236577,-!p1@SIX2!1.21!15.26!SIX2;;chr14:37126765..37126799,+!p2@PAX9!1.20!15.01!PAX9;;chr11:65667884..65667895,-!p2@FOSL1!1.17!53.68!FOSL1;;chr10:28034739..28034756,-!p1@MKX!1.16!13.51!MKX;;chr9:96717629..96717644,-!p1@BARX1!1.15!13.26!BARX1;;chr2:102091566..102091581,-!p1@RFX8!1.15!13.14!RFX8;;chr12:66218573..66218596,+!p7@HMGA2!1.08!16.39!HMGA2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.07!11.51!GLIS1;;chr19:46801639..46801699,+!p1@HIF3A!1.07!10.64!HIF3A;;chr1:170632250..170632277,+!p7@PRRX1!1.06!10.51!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!1.06!10.51!SOX11;;chr20:42543441..42543497,+!p1@TOX2!1.05!46.17!TOX2;;chr1:170632477..170632506,+!p6@PRRX1!1.05!10.13!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.05!10.13!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.04!13.26!PRRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.02!16.14!TFAP2A;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.13!ALX1;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.26!BNC1;;chr6:1389824..1389840,+!p3@FOXF2!1.00!9.01!FOXF2;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.14!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.98!13.39!HMGA2;;chr14:61116168..61116180,-!p2@SIX1!0.98!9.76!SIX1;;chr12:66218420..66218439,+!p12@HMGA2!0.98!8.51!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.15!OSR1;;chr12:66218443..66218461,+!p8@HMGA2!0.97!10.89!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.95!13.64!CREB3L1;;chr17:41622765..41622821,-!p2@ETV4!0.95!12.14!ETV4;;chr12:115122303..115122314,-!p6@TBX3!0.95!8.01!TBX3;;chr1:170632439..170632465,+!p11@PRRX1!0.95!7.88!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.94!8.38!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.93!41.29!ETV1;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.28!DRAP1;;chr6:10415276..10415341,-!p2@TFAP2A!0.92!9.13!TFAP2A;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.26!HAND2;;chr4:299227..299272,-!p1@ZNF732!0.91!7.13!ZNF732;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.16!CREB3L1;;chr11:65667846..65667868,-!p1@FOSL1!0.89!188.30!FOSL1;;chr5:321810..321877,+!p1@AHRR!0.89!22.40!AHRR;;chr17:59477197..59477212,+!p2@TBX2!0.89!11.89!TBX2;;chr17:41623009..41623053,-!p4@ETV4!0.89!11.26!ETV4;;chr8:60031682..60031710,-!p2@TOX!0.89!11.14!TOX;;chr20:42543506..42543549,+!p2@TOX2!0.88!16.52!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.88!14.76!SATB2;;chr12:2986206..2986258,-!p2@FOXM1!0.87!41.16!FOXM1;;chr11:65686802..65686818,+!p6@DRAP1!0.86!11.14!DRAP1;;chr6:45296048..45296082,+!p1@RUNX2!0.86!7.26!RUNX2;;chr1:170632137..170632172,+!p10@PRRX1!0.86!6.26!PRRX1;;chr12:2986275..2986363,-!p1@FOXM1!0.85!65.44!FOXM1;;chr5:176738887..176738934,-!p1@MXD3!0.84!41.91!MXD3;;chr17:41623692..41623715,-!p1@ETV4!0.84!27.15!ETV4;;chr1:170632310..170632321,+!p15@PRRX1!0.84!5.88!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.88!PRRX1;;chr17:41277372..41277418,-!p1@BRCA1!0.83!22.40!BRCA1;;chr4:26322267..26322334,+!p3@RBPJ!0.83!14.51!RBPJ;;chr17:59477275..59477286,+!p3@TBX2!0.83!7.88!TBX2;;chr14:37126814..37126834,+!p4@PAX9!0.83!5.76!PAX9;;chr6:34204973..34204990,+!p4@HMGA1!0.82!80.08!HMGA1;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.63!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!0.81!8.63!PITX1;;chr9:77112244..77112262,+!p1@RORB!0.81!6.13!RORB;;chr6:34204672..34204692,+!p1@HMGA1!0.80!643.99!HMGA1;;chr8:60031619..60031676,-!p1@TOX!0.80!12.14!TOX;;chr7:96654133..96654150,-!p1@DLX5!0.80!5.38!DLX5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.80!5.38!RUNX1T1;;chr4:174451350..174451363,-!p3@HAND2!0.80!5.38!HAND2;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.89!TWIST1;;chr16:86600870..86600921,+!p2@FOXC2!0.79!5.13!FOXC2;;chr12:66218836..66218888,+!p1@HMGA2!0.78!51.42!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!0.78!5.00!TCF12;;chr7:44143925..44143970,+!p1@AEBP1!0.77!120.24!AEBP1;;chr12:115121962..115121987,-!p1@TBX3!0.77!44.92!TBX3;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.14!RUNX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.76!4.75!RUNX1T1;;chr7:14029312..14029325,-!p4@ETV1!0.75!5.88!ETV1;;chr12:85673868..85673881,+!p2@ALX1!0.75!4.63!ALX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.75!4.63!POU3F3;;chr2:121493425..121493474,+!p1@GLI2!0.74!10.51!GLI2;;chr17:17726907..17726958,-!p2@SREBF1!0.73!30.15!SREBF1;;chr9:102584262..102584276,+!p1@NR4A3!0.73!10.51!NR4A3;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.38!ETV4;;chr2:95963052..95963106,+!p1@KCNIP3!0.73!4.38!KCNIP3;;chr5:158526917..158526932,-!p1@EBF1!0.72!11.51!EBF1;;chr12:66218003..66218018,+!p9@HMGA2!0.72!5.38!HMGA2;;chr6:31126291..31126399,+!p1@TCF19!0.71!44.29!TCF19;;chr3:12329358..12329393,+!p3@PPARG!0.71!11.01!PPARG;;chr1:170632959..170632987,+!p4@PRRX1!0.71!4.63!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.71!4.13!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!0.70!20.64!FOXD1;;chr18:22932080..22932170,-!p1@ZNF521!0.70!19.14!ZNF521;;chr8:60031809..60031835,-!p4@TOX!0.70!5.25!TOX;;chr18:52969844..52969895,-!p27@TCF4!0.70!4.00!TCF4;;chr2:172949484..172949522,+!p1@DLX1!0.70!4.00!DLX1;;chr9:102584159..102584174,+!p2@NR4A3!0.69!7.51!NR4A3;;chr12:85674018..85674039,+!p3@ALX1!0.69!3.88!ALX1;;chr12:115121770..115121781,-!p4@TBX3!0.67!3.63!TBX3;;chr5:134369879..134369898,-!p2@PITX1!0.67!3.63!PITX1;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.52!MYBL2;;chrX:66763856..66763896,+!p1@AR!0.66!5.51!AR;;chr8:67525473..67525518,-!p1@MYBL1!0.65!8.76!MYBL1;;chr9:16870710..16870763,-!p1@BNC2!0.65!6.51!BNC2;;chrX:66763815..66763854,+!p2@AR!0.65!4.75!AR;;chr12:115122005..115122016,-!p3@TBX3!0.65!4.25!TBX3;;chr12:115122262..115122271,-!p7@TBX3!0.65!3.50!TBX3;;chr12:66357214..66357233,+!p13@HMGA2!0.65!3.50!HMGA2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.65!3.50!PEG3;;chr1:170632762..170632786,+!p13@PRRX1!0.65!3.50!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.50!RFX8;;chr2:45236579..45236596,-!p2@SIX2!0.65!3.50!SIX2;;chr2:96012397..96012417,+!p3@KCNIP3!0.65!3.50!KCNIP3;;chr12:96588143..96588185,+!p1@ELK3!0.64!48.30!ELK3;;chr11:113930291..113930339,+!p2@ZBTB16!0.64!6.01!ZBTB16;;chr7:14028488..14028516,-!p2@ETV1!0.64!3.75!ETV1;;chr8:25902876..25902936,-!p1@EBF2!0.64!3.38!EBF2;;chr12:66218469..66218477,+!p16@HMGA2!0.64!3.38!HMGA2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.63!17.14!TAL1;;chr4:26322419..26322479,+!p2@RBPJ!0.62!46.04!RBPJ;;chr6:85474299..85474324,-!p1@TBX18!0.62!6.26!TBX18;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.13!PRRX1;;chr14:55493763..55493824,-!p1@WDHD1!0.61!27.40!WDHD1;;chr20:31350184..31350200,+!p1@DNMT3B!0.61!7.26!DNMT3B;;chr19:13134772..13134822,+!p2@NFIX!0.61!4.88!NFIX;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.88!ETV4;;chr16:86600458..86600461,+!p3@FOXC2!0.60!3.00!FOXC2;;chr16:86612320..86612394,+!p1@FOXL1!0.60!3.00!FOXL1;;chr8:60031840..60031869,-!p5@TOX!0.60!3.00!TOX;;chr20:55205825..55205847,+!p2@TFAP2C!0.60!3.00!TFAP2C;;chr11:44331576..44331650,-!p1@ALX4!0.60!3.00!ALX4;;chr7:42276787..42276815,-!p1@GLI3!0.59!8.88!GLI3;;chr1:75600067..75600094,+!p2@LHX8!0.59!2.88!LHX8;;chr8:49833978..49833996,-!p1@SNAI2!0.58!70.44!SNAI2;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.01!ZFHX4;;chr8:60031762..60031803,-!p3@TOX!0.58!4.38!TOX;;chr6:20402102..20402152,+!p1@E2F3!0.57!13.26!E2F3;;chr5:150284532..150284549,-!p1@ZNF300!0.57!6.51!ZNF300;;chr1:247171347..247171366,-!p2@ZNF695!0.57!5.63!ZNF695;;chr1:110613276..110613299,-!p2@ALX3!0.57!2.75!ALX3;;chr1:75602043..75602093,+!p1@LHX8!0.57!2.75!LHX8;;chr18:52969674..52969685,-!p24@TCF4!0.57!2.75!TCF4;;chr8:116673894..116673913,-!p12@TRPS1!0.57!2.75!TRPS1;;chr7:42276822..42276895,-!p2@GLI3!0.56!9.38!GLI3;;chr1:61547894..61547968,+!p2@NFIA!0.56!9.01!NFIA;;chr3:157823517..157823562,-!p1@SHOX2!0.56!2.88!SHOX2;;chr2:5832493..5832507,+!p2@SOX11!0.56!2.63!SOX11;;chr19:57352109..57352153,-!p2@ZIM2!0.56!2.63!ZIM2;;chr20:42602000..42602034,+!p5@TOX2!0.56!2.63!TOX2;;chr6:1389871..1389876,+!p4@FOXF2!0.56!2.63!FOXF2;;chr7:96654026..96654061,-!p2@DLX5!0.56!2.63!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.56!2.63!TOX;;chr4:1873100..1873152,+!p1@WHSC1!0.55!24.15!WHSC1;;chr21:47063625..47063658,+!p1@PCBP3!0.55!13.76!PCBP3;;chr7:44143978..44143989,+!p2@AEBP1!0.55!5.25!AEBP1;;chr6:45390002..45390023,+!p6@RUNX2!0.55!4.88!RUNX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.55!4.25!ZBTB38;;chr19:10305581..10305646,-!p1@DNMT1!0.54!109.60!DNMT1;;chr6:35464817..35464894,-!p1@TEAD3!0.54!47.92!TEAD3;;chr19:23433144..23433204,-!p1@ZNF724P!0.54!13.51!ZNF724P;;chr5:178368186..178368238,+!p1@ZNF454!0.54!5.00!ZNF454;;chr5:72744445..72744466,-!p2@FOXD1!0.54!4.63!FOXD1;;chr17:41622834..41622883,-!p6@ETV4!0.54!3.13!ETV4;;chr1:170632051..170632081,+!p16@PRRX1!0.54!2.50!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.50!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.54!2.50!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.54!2.50!DLX1;;chr19:3366570..3366619,+!p1@NFIC!0.53!98.09!NFIC;;chr7:148581360..148581425,-!p1@EZ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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg38.nobarcode.ctss.bed.gz
|id=FF:11319-117D5
|is_a=EFO:0002091;;FF:0000067
|is_obsolete=
|library_id=CNhs11962
|library_id_phase_based=2:CNhs11962
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11319
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.AGTTCC.11319
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11319
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.AGTTCC.11319
|name=Fibroblast - Periodontal Ligament, donor2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11962,LSID836,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10004,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=117
|rna_catalog_number=SC2635
|rna_concentration=0.665
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1847
|rna_od260/230=
|rna_od260/280=
|rna_position=D5
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117D5
|rna_weight_ug=10
|rnaseq_library_id=SRhi10004.AGTTCC
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=fibroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.30714214882084e-288!GO:0043226;organelle;4.06932740219762e-237!GO:0043229;intracellular organelle;7.26946487626488e-237!GO:0043231;intracellular membrane-bound organelle;1.11316858472462e-228!GO:0043227;membrane-bound organelle;1.88282554268671e-228!GO:0005737;cytoplasm;9.4642736845912e-188!GO:0044422;organelle part;2.1199286804586e-171!GO:0044446;intracellular organelle part;7.98772865028374e-170!GO:0044444;cytoplasmic part;5.95521306534994e-127!GO:0032991;macromolecular complex;2.97519487907435e-115!GO:0005634;nucleus;8.38711797863542e-114!GO:0044238;primary metabolic process;1.85302334881107e-105!GO:0044237;cellular metabolic process;1.78973645341611e-104!GO:0043170;macromolecule metabolic process;2.71251917188462e-99!GO:0030529;ribonucleoprotein complex;3.5254846575473e-92!GO:0044428;nuclear part;1.06972089852812e-91!GO:0043233;organelle lumen;8.14567723757612e-84!GO:0031974;membrane-enclosed lumen;8.14567723757612e-84!GO:0005515;protein binding;3.45965496684103e-79!GO:0003723;RNA binding;2.79186384242144e-75!GO:0005739;mitochondrion;4.35635092000935e-67!GO:0043283;biopolymer metabolic process;9.37110368820561e-65!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.28987162864308e-60!GO:0043234;protein complex;1.25514664409464e-59!GO:0016043;cellular component organization and biogenesis;1.80399025914061e-59!GO:0010467;gene expression;1.70034789980911e-54!GO:0006396;RNA processing;1.70037288292004e-54!GO:0005840;ribosome;3.74801875760974e-53!GO:0031981;nuclear lumen;1.13853091194997e-52!GO:0043228;non-membrane-bound organelle;7.5930839785326e-52!GO:0043232;intracellular non-membrane-bound organelle;7.5930839785326e-52!GO:0006412;translation;2.54779204998514e-48!GO:0031090;organelle membrane;1.12273622234646e-47!GO:0019538;protein metabolic process;1.20562977888985e-46!GO:0006996;organelle organization and biogenesis;1.92892417548787e-45!GO:0006259;DNA metabolic process;2.21873413884297e-45!GO:0044429;mitochondrial part;3.26208807628202e-45!GO:0003735;structural constituent of ribosome;3.89965544676286e-45!GO:0031967;organelle envelope;2.87239682240465e-44!GO:0031975;envelope;6.00642355931836e-44!GO:0016071;mRNA metabolic process;1.09845320483672e-43!GO:0033036;macromolecule localization;6.64942181828922e-42!GO:0015031;protein transport;1.14487671845541e-41!GO:0044260;cellular macromolecule metabolic process;1.65553437453858e-41!GO:0044267;cellular protein metabolic process;7.3375469698944e-41!GO:0008380;RNA splicing;7.67710177779469e-41!GO:0009058;biosynthetic process;1.24405515180179e-39!GO:0033279;ribosomal subunit;1.76499895428588e-38!GO:0003676;nucleic acid binding;2.64369388998379e-38!GO:0065003;macromolecular complex assembly;4.26030851565499e-38!GO:0008104;protein localization;7.65060121477154e-38!GO:0045184;establishment of protein localization;1.08386603056654e-37!GO:0007049;cell cycle;1.10785514778554e-37!GO:0006397;mRNA processing;2.16212252177354e-37!GO:0046907;intracellular transport;2.52186425773936e-37!GO:0044249;cellular biosynthetic process;7.52501867211218e-37!GO:0005829;cytosol;2.11169833347954e-36!GO:0009059;macromolecule biosynthetic process;4.26980237505706e-36!GO:0022607;cellular component assembly;2.63430212582045e-35!GO:0005654;nucleoplasm;3.82415347163783e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.4271239345893e-32!GO:0006886;intracellular protein transport;9.55151211405216e-30!GO:0000166;nucleotide binding;1.30818900149081e-29!GO:0000278;mitotic cell cycle;2.23282503949316e-29!GO:0005694;chromosome;2.7496456117333e-29!GO:0022402;cell cycle process;3.15011461213592e-29!GO:0005681;spliceosome;4.25981892903986e-29!GO:0005740;mitochondrial envelope;2.11024769582054e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.16930614257183e-28!GO:0016070;RNA metabolic process;6.55909821813834e-28!GO:0044451;nucleoplasm part;1.85032881791171e-27!GO:0031966;mitochondrial membrane;2.1534687681046e-26!GO:0019866;organelle inner membrane;5.19117438984185e-26!GO:0044427;chromosomal part;5.21141261568179e-26!GO:0006974;response to DNA damage stimulus;1.02723376112774e-24!GO:0022403;cell cycle phase;2.21266758611191e-24!GO:0000087;M phase of mitotic cell cycle;2.42057108849492e-24!GO:0007067;mitosis;6.70500360599194e-24!GO:0005743;mitochondrial inner membrane;9.78785417908806e-24!GO:0051649;establishment of cellular localization;1.31631027252556e-23!GO:0051641;cellular localization;1.47568230662614e-23!GO:0016462;pyrophosphatase activity;8.46277384198627e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.35700711019369e-22!GO:0051276;chromosome organization and biogenesis;1.79521021062945e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;2.31218810386706e-22!GO:0017111;nucleoside-triphosphatase activity;4.68916216481107e-22!GO:0044445;cytosolic part;6.52463145298188e-22!GO:0051301;cell division;9.72120173850835e-22!GO:0000279;M phase;3.57624073826355e-21!GO:0006281;DNA repair;4.57352704893984e-21!GO:0032553;ribonucleotide binding;1.43731425235093e-20!GO:0032555;purine ribonucleotide binding;1.43731425235093e-20!GO:0031980;mitochondrial lumen;1.61534631789448e-20!GO:0005759;mitochondrial matrix;1.61534631789448e-20!GO:0017076;purine nucleotide binding;1.93683132558096e-20!GO:0012505;endomembrane system;2.07022562461611e-20!GO:0015934;large ribosomal subunit;2.83864178116578e-20!GO:0016874;ligase activity;3.77131940995544e-20!GO:0006119;oxidative phosphorylation;8.02246669973727e-20!GO:0006457;protein folding;9.86600749109363e-20!GO:0015935;small ribosomal subunit;2.80064813537472e-19!GO:0005730;nucleolus;4.95022240787542e-19!GO:0022618;protein-RNA complex assembly;5.83359928320141e-19!GO:0044455;mitochondrial membrane part;6.78656532995455e-19!GO:0006512;ubiquitin cycle;1.59526943864607e-18!GO:0005524;ATP binding;1.59526943864607e-18!GO:0006260;DNA replication;1.60538116730568e-18!GO:0032559;adenyl ribonucleotide binding;4.27780177965281e-18!GO:0009719;response to endogenous stimulus;6.69865073569589e-18!GO:0030554;adenyl nucleotide binding;8.87179826376137e-18!GO:0048770;pigment granule;2.10712893374081e-17!GO:0042470;melanosome;2.10712893374081e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;6.04379826660189e-17!GO:0044265;cellular macromolecule catabolic process;6.2515538846491e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.16220395475223e-16!GO:0005635;nuclear envelope;1.26232294216184e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.5304071658632e-16!GO:0019941;modification-dependent protein catabolic process;1.84646553290567e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.84646553290567e-16!GO:0043285;biopolymer catabolic process;2.45586947644189e-16!GO:0006323;DNA packaging;3.15486262507219e-16!GO:0008134;transcription factor binding;3.80920129161588e-16!GO:0044257;cellular protein catabolic process;3.87386967814597e-16!GO:0031965;nuclear membrane;5.68514056633976e-16!GO:0008135;translation factor activity, nucleic acid binding;6.01053076891003e-16!GO:0005746;mitochondrial respiratory chain;1.19983770922524e-15!GO:0044453;nuclear membrane part;1.31946941410568e-15!GO:0006605;protein targeting;1.42856756139842e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.59260002677741e-15!GO:0005783;endoplasmic reticulum;3.07995076785517e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;3.81674665389905e-15!GO:0000375;RNA splicing, via transesterification reactions;3.81674665389905e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.81674665389905e-15!GO:0005761;mitochondrial ribosome;3.90259249964875e-15!GO:0000313;organellar ribosome;3.90259249964875e-15!GO:0051186;cofactor metabolic process;5.1921820432832e-15!GO:0000502;proteasome complex (sensu Eukaryota);5.1921820432832e-15!GO:0009057;macromolecule catabolic process;1.09583574075261e-14!GO:0042254;ribosome biogenesis and assembly;2.48536584548173e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.9821176824199e-14!GO:0003954;NADH dehydrogenase activity;2.9821176824199e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.9821176824199e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.58023585176275e-14!GO:0043412;biopolymer modification;4.74930881966636e-14!GO:0030163;protein catabolic process;4.98714398474778e-14!GO:0005794;Golgi apparatus;5.91707421489275e-14!GO:0016604;nuclear body;6.70928283715803e-14!GO:0000785;chromatin;7.6561900852141e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.68439465490633e-14!GO:0044432;endoplasmic reticulum part;8.74526146204969e-14!GO:0048193;Golgi vesicle transport;1.29240936347243e-13!GO:0065004;protein-DNA complex assembly;1.4392129105643e-13!GO:0006333;chromatin assembly or disassembly;1.85482149056548e-13!GO:0044248;cellular catabolic process;2.8789449880257e-13!GO:0015630;microtubule cytoskeleton;3.78947967469456e-13!GO:0005643;nuclear pore;4.54883803434954e-13!GO:0051726;regulation of cell cycle;7.39643957747436e-13!GO:0000074;regulation of progression through cell cycle;9.17564181882723e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.23536462929851e-12!GO:0042773;ATP synthesis coupled electron transport;1.23536462929851e-12!GO:0051082;unfolded protein binding;1.49845992952535e-12!GO:0003743;translation initiation factor activity;1.55338524035227e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.07161715811113e-12!GO:0045271;respiratory chain complex I;2.07161715811113e-12!GO:0005747;mitochondrial respiratory chain complex I;2.07161715811113e-12!GO:0006913;nucleocytoplasmic transport;3.15699696337419e-12!GO:0006464;protein modification process;3.74764345201237e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.01994644169384e-12!GO:0050794;regulation of cellular process;5.85088751635783e-12!GO:0016887;ATPase activity;6.14298513293884e-12!GO:0004386;helicase activity;6.34846290722142e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.0496073434551e-12!GO:0006413;translational initiation;7.0496073434551e-12!GO:0051169;nuclear transport;8.19206562478766e-12!GO:0042623;ATPase activity, coupled;1.23367266183137e-11!GO:0006732;coenzyme metabolic process;1.26561956818063e-11!GO:0006403;RNA localization;2.68604008269228e-11!GO:0050657;nucleic acid transport;2.72844773268892e-11!GO:0051236;establishment of RNA localization;2.72844773268892e-11!GO:0050658;RNA transport;2.72844773268892e-11!GO:0005793;ER-Golgi intermediate compartment;3.01927240211718e-11!GO:0006366;transcription from RNA polymerase II promoter;3.41531068781418e-11!GO:0006334;nucleosome assembly;4.80712814750523e-11!GO:0003712;transcription cofactor activity;4.81880365625884e-11!GO:0065002;intracellular protein transport across a membrane;5.00218414691749e-11!GO:0006399;tRNA metabolic process;5.37888063838153e-11!GO:0006446;regulation of translational initiation;6.31940431752823e-11!GO:0016607;nuclear speck;6.43523775793006e-11!GO:0043687;post-translational protein modification;6.58632298206329e-11!GO:0016192;vesicle-mediated transport;7.3854605505627e-11!GO:0000775;chromosome, pericentric region;7.39687522088968e-11!GO:0046930;pore complex;7.69323063555334e-11!GO:0005819;spindle;1.28016689998521e-10!GO:0031497;chromatin assembly;2.46431727378812e-10!GO:0009259;ribonucleotide metabolic process;3.60906621556058e-10!GO:0008565;protein transporter activity;3.86619783321618e-10!GO:0008639;small protein conjugating enzyme activity;3.96420367316518e-10!GO:0006461;protein complex assembly;3.99324746102523e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.30489963685727e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.1562395817815e-10!GO:0004812;aminoacyl-tRNA ligase activity;6.1562395817815e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.1562395817815e-10!GO:0009055;electron carrier activity;6.40040349726707e-10!GO:0006163;purine nucleotide metabolic process;8.42074179896335e-10!GO:0004842;ubiquitin-protein ligase activity;8.71875428344308e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.90386182419633e-10!GO:0043038;amino acid activation;1.26355711362573e-09!GO:0006418;tRNA aminoacylation for protein translation;1.26355711362573e-09!GO:0043039;tRNA aminoacylation;1.26355711362573e-09!GO:0043566;structure-specific DNA binding;1.30987977917171e-09!GO:0019787;small conjugating protein ligase activity;1.50686996814216e-09!GO:0006364;rRNA processing;1.55113480973098e-09!GO:0008026;ATP-dependent helicase activity;1.58022905717499e-09!GO:0003697;single-stranded DNA binding;1.69194591277153e-09!GO:0051028;mRNA transport;1.96437006723045e-09!GO:0005789;endoplasmic reticulum membrane;2.33988120590945e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.62578834204576e-09!GO:0005813;centrosome;3.67474480155526e-09!GO:0009150;purine ribonucleotide metabolic process;3.87485572402995e-09!GO:0016072;rRNA metabolic process;5.13964020664565e-09!GO:0017038;protein import;5.32117833977528e-09!GO:0016568;chromatin modification;6.08143940188508e-09!GO:0005815;microtubule organizing center;9.40596798402917e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.02037233576028e-08!GO:0009060;aerobic respiration;1.03641830770188e-08!GO:0016881;acid-amino acid ligase activity;1.06687398534409e-08!GO:0006261;DNA-dependent DNA replication;1.08510325533692e-08!GO:0006164;purine nucleotide biosynthetic process;1.10101981317211e-08!GO:0050789;regulation of biological process;1.2708844859989e-08!GO:0009260;ribonucleotide biosynthetic process;1.3649146557764e-08!GO:0019222;regulation of metabolic process;1.69796655037789e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.7151744431959e-08!GO:0045333;cellular respiration;2.01544191282953e-08!GO:0012501;programmed cell death;2.01544191282953e-08!GO:0005667;transcription factor complex;2.30685457935355e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.87481366672378e-08!GO:0006915;apoptosis;3.58079107375282e-08!GO:0016740;transferase activity;5.08850130919119e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.1370647757409e-08!GO:0009141;nucleoside triphosphate metabolic process;5.20601291782013e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.34461993593084e-08!GO:0048523;negative regulation of cellular process;5.39498093682365e-08!GO:0007051;spindle organization and biogenesis;5.39498093682365e-08!GO:0030120;vesicle coat;7.79981098977835e-08!GO:0030662;coated vesicle membrane;7.79981098977835e-08!GO:0051329;interphase of mitotic cell cycle;9.28076989285785e-08!GO:0016779;nucleotidyltransferase activity;1.08549556895169e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.16107683081332e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.16107683081332e-07!GO:0031324;negative regulation of cellular metabolic process;1.21301513986278e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.39350389411116e-07!GO:0051188;cofactor biosynthetic process;1.40395945613621e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.59429739082387e-07!GO:0048475;coated membrane;1.60146635931084e-07!GO:0030117;membrane coat;1.60146635931084e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.66262634500156e-07!GO:0008219;cell death;1.73937998215475e-07!GO:0016265;death;1.73937998215475e-07!GO:0009056;catabolic process;2.07116153073963e-07!GO:0003924;GTPase activity;2.20991118933334e-07!GO:0007010;cytoskeleton organization and biogenesis;2.28492897065877e-07!GO:0006099;tricarboxylic acid cycle;2.31365783624983e-07!GO:0046356;acetyl-CoA catabolic process;2.31365783624983e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.55726491905155e-07!GO:0008094;DNA-dependent ATPase activity;3.02788488779653e-07!GO:0005657;replication fork;3.02788488779653e-07!GO:0032446;protein modification by small protein conjugation;3.23130082194966e-07!GO:0051325;interphase;3.6254846661774e-07!GO:0000151;ubiquitin ligase complex;4.03041640767327e-07!GO:0006084;acetyl-CoA metabolic process;4.19666033101873e-07!GO:0000245;spliceosome assembly;4.51776735111982e-07!GO:0000075;cell cycle checkpoint;5.63443765494395e-07!GO:0046034;ATP metabolic process;5.84517591241663e-07!GO:0007005;mitochondrion organization and biogenesis;6.22355618241892e-07!GO:0016567;protein ubiquitination;6.63833750833286e-07!GO:0016563;transcription activator activity;6.66094401547551e-07!GO:0009109;coenzyme catabolic process;6.66094401547551e-07!GO:0003713;transcription coactivator activity;7.39700472421845e-07!GO:0051246;regulation of protein metabolic process;7.91142760876742e-07!GO:0015986;ATP synthesis coupled proton transport;9.55549643730392e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.55549643730392e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.02840406560529e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.02840406560529e-06!GO:0051170;nuclear import;1.05397639434055e-06!GO:0044431;Golgi apparatus part;1.07112202224414e-06!GO:0043623;cellular protein complex assembly;1.21171468996087e-06!GO:0005788;endoplasmic reticulum lumen;1.21701098150863e-06!GO:0009892;negative regulation of metabolic process;1.24028663713291e-06!GO:0019829;cation-transporting ATPase activity;1.32048852979577e-06!GO:0051187;cofactor catabolic process;1.57810206317528e-06!GO:0006606;protein import into nucleus;1.66462309660119e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.66739236561183e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.84202202254561e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.84813843582623e-06!GO:0016481;negative regulation of transcription;1.96334266208919e-06!GO:0007059;chromosome segregation;1.96963447623737e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.17644696842312e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.17644696842312e-06!GO:0048519;negative regulation of biological process;2.24507157205165e-06!GO:0045259;proton-transporting ATP synthase complex;2.5434703349526e-06!GO:0009117;nucleotide metabolic process;2.92235378472799e-06!GO:0003724;RNA helicase activity;3.52169961942999e-06!GO:0005768;endosome;3.56657026166374e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.57904525829465e-06!GO:0031323;regulation of cellular metabolic process;4.13085482516751e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.69618370557969e-06!GO:0006793;phosphorus metabolic process;5.50242231862063e-06!GO:0006796;phosphate metabolic process;5.50242231862063e-06!GO:0009108;coenzyme biosynthetic process;5.81074464675059e-06!GO:0006613;cotranslational protein targeting to membrane;5.81074464675059e-06!GO:0016564;transcription repressor activity;6.50805387632561e-06!GO:0000776;kinetochore;6.88096504720186e-06!GO:0000786;nucleosome;6.95238436063556e-06!GO:0005762;mitochondrial large ribosomal subunit;8.16202207326128e-06!GO:0000315;organellar large ribosomal subunit;8.16202207326128e-06!GO:0003899;DNA-directed RNA polymerase activity;8.24917622599878e-06!GO:0016859;cis-trans isomerase activity;8.29203837979605e-06!GO:0005798;Golgi-associated vesicle;8.39031689540534e-06!GO:0006350;transcription;8.99733974691129e-06!GO:0006754;ATP biosynthetic process;1.11119666018918e-05!GO:0006753;nucleoside phosphate metabolic process;1.11119666018918e-05!GO:0016853;isomerase activity;1.11171043387471e-05!GO:0003682;chromatin binding;1.14642669352829e-05!GO:0045786;negative regulation of progression through cell cycle;1.2376058739919e-05!GO:0031252;leading edge;1.24499741038322e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.41683099268332e-05!GO:0051427;hormone receptor binding;1.50000666271546e-05!GO:0006752;group transfer coenzyme metabolic process;1.80457165050185e-05!GO:0008654;phospholipid biosynthetic process;1.89980544077323e-05!GO:0005874;microtubule;2.23216486279668e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.23608943851597e-05!GO:0016126;sterol biosynthetic process;2.3738064281612e-05!GO:0019899;enzyme binding;2.60740154748097e-05!GO:0044440;endosomal part;2.60740154748097e-05!GO:0010008;endosome membrane;2.60740154748097e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.75867434852516e-05!GO:0005525;GTP binding;2.9862355215197e-05!GO:0006302;double-strand break repair;3.19790760160329e-05!GO:0000139;Golgi membrane;3.27761525183119e-05!GO:0035257;nuclear hormone receptor binding;3.33184116644806e-05!GO:0016310;phosphorylation;3.39084584195503e-05!GO:0043021;ribonucleoprotein binding;3.86716762165546e-05!GO:0031988;membrane-bound vesicle;4.64232640662632e-05!GO:0006310;DNA recombination;4.77933534784163e-05!GO:0051168;nuclear export;4.78724170124137e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.28229398384979e-05!GO:0045454;cell redox homeostasis;5.28229398384979e-05!GO:0030867;rough endoplasmic reticulum membrane;5.55390778158314e-05!GO:0016023;cytoplasmic membrane-bound vesicle;5.58771870608555e-05!GO:0000059;protein import into nucleus, docking;6.65765697177944e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.10872498803585e-05!GO:0010468;regulation of gene expression;7.34587970848526e-05!GO:0031968;organelle outer membrane;7.6562495134957e-05!GO:0003690;double-stranded DNA binding;8.09969932676626e-05!GO:0003684;damaged DNA binding;8.19436736608632e-05!GO:0019867;outer membrane;8.25625654937364e-05!GO:0051252;regulation of RNA metabolic process;8.73699536232238e-05!GO:0031982;vesicle;8.80949108540301e-05!GO:0016363;nuclear matrix;8.85826827119808e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.28859703593336e-05!GO:0051052;regulation of DNA metabolic process;9.70089287015487e-05!GO:0006916;anti-apoptosis;0.000100933063337714!GO:0016787;hydrolase activity;0.000109908269926226!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000114977539362483!GO:0031410;cytoplasmic vesicle;0.000115369902906008!GO:0004298;threonine endopeptidase activity;0.000122177155854486!GO:0000314;organellar small ribosomal subunit;0.000123303605838675!GO:0005763;mitochondrial small ribosomal subunit;0.000123303605838675!GO:0005905;coated pit;0.000128401942241462!GO:0016491;oxidoreductase activity;0.000134025846834548!GO:0007052;mitotic spindle organization and biogenesis;0.00014191846667278!GO:0008186;RNA-dependent ATPase activity;0.000145289784838755!GO:0065007;biological regulation;0.000151449502476671!GO:0006695;cholesterol biosynthetic process;0.000153924777776188!GO:0030133;transport vesicle;0.00017740487937059!GO:0000228;nuclear chromosome;0.000177764184781234!GO:0032561;guanyl ribonucleotide binding;0.000181789365503895!GO:0019001;guanyl nucleotide binding;0.000181789365503895!GO:0007017;microtubule-based process;0.000185053995279267!GO:0005770;late endosome;0.000195847826983582!GO:0007093;mitotic cell cycle checkpoint;0.000213760695521662!GO:0005048;signal sequence binding;0.000221665396056284!GO:0008092;cytoskeletal protein binding;0.00024658512390054!GO:0007088;regulation of mitosis;0.000246600067083926!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000258297465066695!GO:0030029;actin filament-based process;0.000262482238117961!GO:0005769;early endosome;0.000271498049338177!GO:0042981;regulation of apoptosis;0.000277780803766035!GO:0005741;mitochondrial outer membrane;0.000289764286446425!GO:0008361;regulation of cell size;0.0002905771323261!GO:0043067;regulation of programmed cell death;0.000316193976643928!GO:0003678;DNA helicase activity;0.000323009417319973!GO:0003729;mRNA binding;0.00033402011338161!GO:0003714;transcription corepressor activity;0.000349528094423572!GO:0016049;cell growth;0.000352089840882804!GO:0006383;transcription from RNA polymerase III promoter;0.000369792331365551!GO:0005885;Arp2/3 protein complex;0.000378967105236617!GO:0043069;negative regulation of programmed cell death;0.000407993818579565!GO:0006626;protein targeting to mitochondrion;0.000417141388666442!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000418893026599787!GO:0004004;ATP-dependent RNA helicase activity;0.000429477266368405!GO:0006402;mRNA catabolic process;0.000431695444611637!GO:0006091;generation of precursor metabolites and energy;0.00044191144588525!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000504666860507605!GO:0043066;negative regulation of apoptosis;0.000505405297945322!GO:0006612;protein targeting to membrane;0.000512436845815846!GO:0008250;oligosaccharyl transferase complex;0.000534208529946636!GO:0000922;spindle pole;0.000545555212398934!GO:0032774;RNA biosynthetic process;0.000547901612306571!GO:0004674;protein serine/threonine kinase activity;0.000571204983771836!GO:0005876;spindle microtubule;0.000627988319516206!GO:0005791;rough endoplasmic reticulum;0.000628777759672414!GO:0043681;protein import into mitochondrion;0.000631838599119718!GO:0003677;DNA binding;0.000631838599119718!GO:0045892;negative regulation of transcription, DNA-dependent;0.00063606977739639!GO:0046474;glycerophospholipid biosynthetic process;0.000636220116648805!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000655241677891965!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000671346027674485!GO:0006414;translational elongation;0.000691873704138886!GO:0016741;transferase activity, transferring one-carbon groups;0.000702742127708882!GO:0006351;transcription, DNA-dependent;0.000711708522070232!GO:0008168;methyltransferase activity;0.00074969525613968!GO:0008610;lipid biosynthetic process;0.000753189867421094!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000816708894131474!GO:0004576;oligosaccharyl transferase activity;0.00082300110405373!GO:0015631;tubulin binding;0.000855404095533274!GO:0043488;regulation of mRNA stability;0.000858365120508243!GO:0043487;regulation of RNA stability;0.000858365120508243!GO:0042802;identical protein binding;0.000870672920676427!GO:0051789;response to protein stimulus;0.000890899994686119!GO:0006986;response to unfolded protein;0.000890899994686119!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000919531689860462!GO:0033116;ER-Golgi intermediate compartment membrane;0.000927998928872973!GO:0006352;transcription initiation;0.000964658353599781!GO:0035258;steroid hormone receptor binding;0.0010141161303215!GO:0030663;COPI coated vesicle membrane;0.00103402184392343!GO:0030126;COPI vesicle coat;0.00103402184392343!GO:0006839;mitochondrial transport;0.00107875594195165!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00110032280252897!GO:0048471;perinuclear region of cytoplasm;0.0011014097421824!GO:0032508;DNA duplex unwinding;0.00111571577765999!GO:0032392;DNA geometric change;0.00111571577765999!GO:0051920;peroxiredoxin activity;0.00111786453550178!GO:0001558;regulation of cell growth;0.00114095311066952!GO:0048500;signal recognition particle;0.00116924037286079!GO:0008047;enzyme activator activity;0.00118060620649579!GO:0005096;GTPase activator activity;0.00119553961433687!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00119562489229366!GO:0005684;U2-dependent spliceosome;0.0012021809905049!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00120817888110261!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00120817888110261!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00120817888110261!GO:0000082;G1/S transition of mitotic cell cycle;0.00120884410361063!GO:0031072;heat shock protein binding;0.00128385065295934!GO:0006401;RNA catabolic process;0.00135214412145326!GO:0030134;ER to Golgi transport vesicle;0.00140484110584395!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00143148802250767!GO:0018196;peptidyl-asparagine modification;0.00146229682048607!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00146229682048607!GO:0006268;DNA unwinding during replication;0.00149576911322744!GO:0030658;transport vesicle membrane;0.00153387738609722!GO:0004527;exonuclease activity;0.00155270363022339!GO:0009165;nucleotide biosynthetic process;0.00168089035650985!GO:0007006;mitochondrial membrane organization and biogenesis;0.00172682713676198!GO:0030521;androgen receptor signaling pathway;0.00180056979341484!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00181185270734541!GO:0046467;membrane lipid biosynthetic process;0.00183513156776708!GO:0000910;cytokinesis;0.00183532758585255!GO:0008312;7S RNA binding;0.00186874144923336!GO:0019843;rRNA binding;0.00187383241405129!GO:0045449;regulation of transcription;0.00203479246169707!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00205952405173379!GO:0006891;intra-Golgi vesicle-mediated transport;0.00207176675259651!GO:0030880;RNA polymerase complex;0.00210870932153838!GO:0006275;regulation of DNA replication;0.00221411954271765!GO:0008033;tRNA processing;0.00222353256166142!GO:0005637;nuclear inner membrane;0.00228684548140201!GO:0030127;COPII vesicle coat;0.00229159178153063!GO:0012507;ER to Golgi transport vesicle membrane;0.00229159178153063!GO:0030137;COPI-coated vesicle;0.00241404748940939!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00241404748940939!GO:0000819;sister chromatid segregation;0.00241404748940939!GO:0030027;lamellipodium;0.00243478222339241!GO:0051540;metal cluster binding;0.00246596954976212!GO:0051536;iron-sulfur cluster binding;0.00246596954976212!GO:0000792;heterochromatin;0.00249554519279091!GO:0008180;signalosome;0.002736284124217!GO:0043596;nuclear replication fork;0.00276208381658731!GO:0030132;clathrin coat of coated pit;0.00278064082394073!GO:0006289;nucleotide-excision repair;0.00280519098708878!GO:0000070;mitotic sister chromatid segregation;0.00288416947836569!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00305012510625151!GO:0045047;protein targeting to ER;0.00305012510625151!GO:0031124;mRNA 3'-end processing;0.00319425984554203!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00320190521952186!GO:0044452;nucleolar part;0.0032998159080014!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00333225166361203!GO:0031570;DNA integrity checkpoint;0.00334095421002166!GO:0051287;NAD binding;0.00344303537768764!GO:0006338;chromatin remodeling;0.00345486170624785!GO:0051087;chaperone binding;0.00349846402970493!GO:0030118;clathrin coat;0.00352716669705903!GO:0045941;positive regulation of transcription;0.00370893690412251!GO:0006405;RNA export from nucleus;0.00371871206395072!GO:0043284;biopolymer biosynthetic process;0.0037220319013594!GO:0045893;positive regulation of transcription, DNA-dependent;0.00379144035085137!GO:0017166;vinculin binding;0.00381197290918864!GO:0008139;nuclear localization sequence binding;0.00381688469048467!GO:0006595;polyamine metabolic process;0.00382209898983845!GO:0032984;macromolecular complex disassembly;0.00389261501443175!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00408945573759345!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00429505199514516!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00429505199514516!GO:0000049;tRNA binding;0.00441425019663792!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00443351341163898!GO:0000428;DNA-directed RNA polymerase complex;0.00443351341163898!GO:0006284;base-excision repair;0.00446533804446989!GO:0006611;protein export from nucleus;0.00467153831036662!GO:0030660;Golgi-associated vesicle membrane;0.00492986258669526!GO:0031901;early endosome membrane;0.004935613395911!GO:0050662;coenzyme binding;0.00551907376416695!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00563545435011205!GO:0005856;cytoskeleton;0.00563545435011205!GO:0046489;phosphoinositide biosynthetic process;0.00571491512103088!GO:0016251;general RNA polymerase II transcription factor activity;0.0057475368931129!GO:0000793;condensed chromosome;0.00611253104699762!GO:0003711;transcription elongation regulator activity;0.00653210430944946!GO:0043624;cellular protein complex disassembly;0.00656948131923326!GO:0008022;protein C-terminus binding;0.00658816807412261!GO:0051128;regulation of cellular component organization and biogenesis;0.00685523541443446!GO:0000725;recombinational repair;0.00690702906401349!GO:0000724;double-strand break repair via homologous recombination;0.00690702906401349!GO:0004003;ATP-dependent DNA helicase activity;0.00710859125351485!GO:0043241;protein complex disassembly;0.00728368054134691!GO:0016584;nucleosome positioning;0.00735935216720296!GO:0009112;nucleobase metabolic process;0.00757384795383848!GO:0042770;DNA damage response, signal transduction;0.0078647026175525!GO:0016044;membrane organization and biogenesis;0.00788460319206632!GO:0042393;histone binding;0.00791922336983986!GO:0007264;small GTPase mediated signal transduction;0.00822128905330104!GO:0048522;positive regulation of cellular process;0.00829840378490482!GO:0050681;androgen receptor binding;0.00863408808221371!GO:0005669;transcription factor TFIID complex;0.00884724550110256!GO:0001726;ruffle;0.00902970981673616!GO:0040029;regulation of gene expression, epigenetic;0.00910375872835385!GO:0044454;nuclear chromosome part;0.00928463290038077!GO:0006144;purine base metabolic process;0.00931561772066557!GO:0005832;chaperonin-containing T-complex;0.00932472229267517!GO:0005758;mitochondrial intermembrane space;0.00942758549400945!GO:0031123;RNA 3'-end processing;0.00946624361857775!GO:0051539;4 iron, 4 sulfur cluster binding;0.00950057861940454!GO:0006220;pyrimidine nucleotide metabolic process;0.0095522752927521!GO:0003746;translation elongation factor activity;0.0097111701691654!GO:0000339;RNA cap binding;0.00976213458569356!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00996096727618371!GO:0006270;DNA replication initiation;0.0101920293499862!GO:0030176;integral to endoplasmic reticulum membrane;0.0109882225162279!GO:0043022;ribosome binding;0.0110847853132958!GO:0007050;cell cycle arrest;0.0114631582577577!GO:0016408;C-acyltransferase activity;0.0114787511212939!GO:0043601;nuclear replisome;0.0115642813988707!GO:0030894;replisome;0.0115642813988707!GO:0030041;actin filament polymerization;0.0115642813988707!GO:0019752;carboxylic acid metabolic process;0.0117196981230473!GO:0016407;acetyltransferase activity;0.0120605213263092!GO:0005869;dynactin complex;0.0123078075410268!GO:0006520;amino acid metabolic process;0.0123078075410268!GO:0006082;organic acid metabolic process;0.0123156262808635!GO:0005862;muscle thin filament tropomyosin;0.0125695479571684!GO:0005100;Rho GTPase activator activity;0.0126414909968034!GO:0005773;vacuole;0.0126855343209938!GO:0004177;aminopeptidase activity;0.0127981392340741!GO:0007243;protein kinase cascade;0.0128726620337489!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.012958595982598!GO:0030119;AP-type membrane coat adaptor complex;0.0129906643573553!GO:0030518;steroid hormone receptor signaling pathway;0.013270041716169!GO:0016197;endosome transport;0.0135810540744321!GO:0065009;regulation of a molecular function;0.0136344456751689!GO:0004518;nuclease activity;0.0136788967522357!GO:0000077;DNA damage checkpoint;0.0137150905559459!GO:0048487;beta-tubulin binding;0.0142611438063734!GO:0006355;regulation of transcription, DNA-dependent;0.0143470191597599!GO:0032200;telomere organization and biogenesis;0.0143592849241271!GO:0000723;telomere maintenance;0.0143592849241271!GO:0000152;nuclear ubiquitin ligase complex;0.0144826253352018!GO:0007346;regulation of progression through mitotic cell cycle;0.0147610138447091!GO:0008154;actin polymerization and/or depolymerization;0.0147610138447091!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0148753462301452!GO:0009303;rRNA transcription;0.0150028255310017!GO:0019206;nucleoside kinase activity;0.0151035067850182!GO:0006650;glycerophospholipid metabolic process;0.0158400317789994!GO:0007021;tubulin folding;0.0158593333051286!GO:0046483;heterocycle metabolic process;0.0158593333051286!GO:0006376;mRNA splice site selection;0.0159092250123188!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0159092250123188!GO:0009116;nucleoside metabolic process;0.016243858673098!GO:0008629;induction of apoptosis by intracellular signals;0.0165118371282459!GO:0032259;methylation;0.0169106042540646!GO:0000209;protein polyubiquitination;0.0173749261194618!GO:0006740;NADPH regeneration;0.0174600583474204!GO:0006098;pentose-phosphate shunt;0.0174600583474204!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0178905983274481!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0180563636745738!GO:0000096;sulfur amino acid metabolic process;0.0181266649930813!GO:0031625;ubiquitin protein ligase binding;0.0183631272063558!GO:0006607;NLS-bearing substrate import into nucleus;0.0183631272063558!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0184112039263143!GO:0016272;prefoldin complex;0.0186438813051915!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0189438527696595!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0189777454904301!GO:0007569;cell aging;0.0190195160776764!GO:0019783;small conjugating protein-specific protease activity;0.0192951711229206!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0194196156684101!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0194733954296382!GO:0015002;heme-copper terminal oxidase activity;0.0194733954296382!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0194733954296382!GO:0004129;cytochrome-c oxidase activity;0.0194733954296382!GO:0033673;negative regulation of kinase activity;0.0194733954296382!GO:0006469;negative regulation of protein kinase activity;0.0194733954296382!GO:0031577;spindle checkpoint;0.0202469653620805!GO:0048037;cofactor binding;0.0203957055557361!GO:0000178;exosome (RNase complex);0.020443114760409!GO:0043189;H4/H2A histone acetyltransferase complex;0.020443114760409!GO:0043414;biopolymer methylation;0.0206241461749636!GO:0031970;organelle envelope lumen;0.0207182825100523!GO:0008276;protein methyltransferase activity;0.0209774604830861!GO:0030131;clathrin adaptor complex;0.021047360290498!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0215176072337258!GO:0004843;ubiquitin-specific protease activity;0.0216242074014736!GO:0008299;isoprenoid biosynthetic process;0.0216400522183917!GO:0000323;lytic vacuole;0.0216400522183917!GO:0005764;lysosome;0.0216400522183917!GO:0031529;ruffle organization and biogenesis;0.0216400522183917!GO:0003702;RNA polymerase II transcription factor activity;0.0216400522183917!GO:0006950;response to stress;0.0216559077187365!GO:0000287;magnesium ion binding;0.021868614679741!GO:0030659;cytoplasmic vesicle membrane;0.0221888262646506!GO:0006541;glutamine metabolic process;0.0221888262646506!GO:0006378;mRNA polyadenylation;0.0224546423863672!GO:0051348;negative regulation of transferase activity;0.0227543150864133!GO:0045045;secretory pathway;0.0229164694070056!GO:0000084;S phase of mitotic cell cycle;0.0232440895176935!GO:0016301;kinase activity;0.0232440895176935!GO:0000781;chromosome, telomeric region;0.0233727027013546!GO:0030496;midbody;0.0233727027013546!GO:0035267;NuA4 histone acetyltransferase complex;0.0236957624874706!GO:0030125;clathrin vesicle coat;0.0240123789926364!GO:0030665;clathrin coated vesicle membrane;0.0240123789926364!GO:0015992;proton transport;0.0245957429596354!GO:0047485;protein N-terminus binding;0.0247340407740163!GO:0051053;negative regulation of DNA metabolic process;0.0247340407740163!GO:0006818;hydrogen transport;0.0262297986903693!GO:0005663;DNA replication factor C complex;0.026462257839709!GO:0009124;nucleoside monophosphate biosynthetic process;0.0265005605528551!GO:0009123;nucleoside monophosphate metabolic process;0.0265005605528551!GO:0006509;membrane protein ectodomain proteolysis;0.0266032777449982!GO:0033619;membrane protein proteolysis;0.0266032777449982!GO:0005083;small GTPase regulator activity;0.0271198335833995!GO:0006497;protein amino acid lipidation;0.0271437501582438!GO:0008632;apoptotic program;0.0274904607442548!GO:0016790;thiolester hydrolase activity;0.0279621430219632!GO:0030695;GTPase regulator activity;0.0282045220666826!GO:0008652;amino acid biosynthetic process;0.0284717499774393!GO:0000123;histone acetyltransferase complex;0.0292271316165876!GO:0031371;ubiquitin conjugating enzyme complex;0.029274738961494!GO:0006984;ER-nuclear signaling pathway;0.0292910017596119!GO:0004221;ubiquitin thiolesterase activity;0.0297144597742343!GO:0022411;cellular component disassembly;0.0298064153504943!GO:0051656;establishment of organelle localization;0.0298924566011!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0299967077222589!GO:0015399;primary active transmembrane transporter activity;0.0299967077222589!GO:0000118;histone deacetylase complex;0.0306050310459689!GO:0004722;protein serine/threonine phosphatase activity;0.0307719607495585!GO:0007265;Ras protein signal transduction;0.0308999654435134!GO:0044262;cellular carbohydrate metabolic process;0.0314714180743469!GO:0003756;protein disulfide isomerase activity;0.0322988328834134!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0322988328834134!GO:0007004;telomere maintenance via telomerase;0.0324288468020798!GO:0008536;Ran GTPase binding;0.0325112655107527!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0325163049089605!GO:0046128;purine ribonucleoside metabolic process;0.0325163049089605!GO:0042278;purine nucleoside metabolic process;0.0325163049089605!GO:0030145;manganese ion binding;0.0326234756437304!GO:0005099;Ras GTPase activator activity;0.0328779177426677!GO:0040008;regulation of growth;0.0330026629496854!GO:0004523;ribonuclease H activity;0.0330026629496854!GO:0006892;post-Golgi vesicle-mediated transport;0.0331305901975798!GO:0005784;translocon complex;0.0340854377969471!GO:0006979;response to oxidative stress;0.0344848186946265!GO:0004448;isocitrate dehydrogenase activity;0.0345953903326544!GO:0051098;regulation of binding;0.0346330806478059!GO:0008234;cysteine-type peptidase activity;0.0349220173628181!GO:0030911;TPR domain binding;0.0352146247439785!GO:0030508;thiol-disulfide exchange intermediate activity;0.0353778079960203!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0354285917066237!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0355097829770964!GO:0006779;porphyrin biosynthetic process;0.0367172252023926!GO:0033014;tetrapyrrole biosynthetic process;0.0367172252023926!GO:0005875;microtubule associated complex;0.0369049956250257!GO:0031902;late endosome membrane;0.0370053360801744!GO:0046112;nucleobase biosynthetic process;0.0374016052297702!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0383337041590226!GO:0042026;protein refolding;0.0383337041590226!GO:0008017;microtubule binding;0.0383337041590226!GO:0006778;porphyrin metabolic process;0.0384447015148716!GO:0033013;tetrapyrrole metabolic process;0.0384447015148716!GO:0051101;regulation of DNA binding;0.0386410685737175!GO:0017134;fibroblast growth factor binding;0.0389206661531711!GO:0008287;protein serine/threonine phosphatase complex;0.0391199675995377!GO:0030384;phosphoinositide metabolic process;0.0394556646680168!GO:0016581;NuRD complex;0.0396736632397163!GO:0008097;5S rRNA binding;0.0397324280622293!GO:0043130;ubiquitin binding;0.040047782966197!GO:0032182;small conjugating protein binding;0.040047782966197!GO:0051320;S phase;0.0400964111931065!GO:0005881;cytoplasmic microtubule;0.0403839497427893!GO:0016125;sterol metabolic process;0.0403839497427893!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0403839497427893!GO:0022415;viral reproductive process;0.0405301395747373!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0407316268589684!GO:0008286;insulin receptor signaling pathway;0.0408377412344823!GO:0000726;non-recombinational repair;0.0410472032234636!GO:0003887;DNA-directed DNA polymerase activity;0.0414474117667084!GO:0008408;3'-5' exonuclease activity;0.0415313180457489!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0415676966707039!GO:0046966;thyroid hormone receptor binding;0.0419221857644208!GO:0009451;RNA modification;0.0428158058487959!GO:0006739;NADP metabolic process;0.0428650827423483!GO:0005680;anaphase-promoting complex;0.0429620282344086!GO:0006506;GPI anchor biosynthetic process;0.0429620282344086!GO:0044433;cytoplasmic vesicle part;0.0429620282344086!GO:0006730;one-carbon compound metabolic process;0.0430305456353088!GO:0030032;lamellipodium biogenesis;0.0431073601304092!GO:0006007;glucose catabolic process;0.0435180770877086!GO:0004680;casein kinase activity;0.0435180770877086!GO:0030522;intracellular receptor-mediated signaling pathway;0.0435180770877086!GO:0043550;regulation of lipid kinase activity;0.0452906553434116!GO:0050178;phenylpyruvate tautomerase activity;0.0454361563571986!GO:0030833;regulation of actin filament polymerization;0.046184453668401!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0465793891027262!GO:0033043;regulation of organelle organization and biogenesis;0.0465793891027262!GO:0006596;polyamine biosynthetic process;0.0466060829951848!GO:0016585;chromatin remodeling complex;0.0466939406753178!GO:0012506;vesicle membrane;0.046786593189788!GO:0004532;exoribonuclease activity;0.0470157639598759!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0470157639598759!GO:0003779;actin binding;0.0474998575843667!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0481361917447144!GO:0042158;lipoprotein biosynthetic process;0.0484989291995416!GO:0032153;cell division site;0.0498321574716169!GO:0032155;cell division site part;0.0498321574716169!GO:0006505;GPI anchor metabolic process;0.0499614645770342!GO:0050000;chromosome localization;0.0499614645770342!GO:0051303;establishment of chromosome localization;0.0499614645770342!GO:0004239;methionyl aminopeptidase activity;0.0499614645770342
|sample_id=11319
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=periodontal ligament
|top_motifs=TFDP1:1.77608075549;TOPORS:1.5157380392;GFI1:1.41981338001;E2F1..5:1.38507585312;ALX4:1.30409372567;NFY{A,B,C}:1.19689032998;PAX8:1.10197064252;NKX2-2,8:1.06818837438;ZIC1..3:1.05663375165;AIRE:1.03664935076;MYB:0.940038947204;PDX1:0.896639836915;ZNF238:0.835869823999;EN1,2:0.813507164028;FOXD3:0.784660858093;PAX4:0.780982418356;ZNF143:0.773597665991;POU3F1..4:0.734778716458;NR3C1:0.689437289074;NR1H4:0.685048612429;RXR{A,B,G}:0.674166432679;MZF1:0.674070411014;TFAP4:0.659771997513;GZF1:0.654395106532;NRF1:0.609006644214;NKX3-1:0.589446480472;NKX6-1,2:0.586051214085;UFEwm:0.584271398741;TFAP2{A,C}:0.580765347849;SOX17:0.566055678021;GTF2A1,2:0.565399501245;TEF:0.561764581093;XCPE1{core}:0.536162849451;YY1:0.498458294043;PBX1:0.475165924939;NFIX:0.472684371182;PRDM1:0.456517521373;PATZ1:0.452862521748;STAT1,3:0.45108629787;KLF4:0.450813542539;LHX3,4:0.447866395575;PITX1..3:0.430902097822;CDC5L:0.429746482877;FOXQ1:0.416958907747;GTF2I:0.388710716893;NANOG{mouse}:0.384970119093;TEAD1:0.382977118054;T:0.379972363452;PAX5:0.366881258706;HOX{A5,B5}:0.359663430167;MYBL2:0.342013615666;EVI1:0.341275102878;ONECUT1,2:0.338174684377;POU1F1:0.323476519291;GATA4:0.294603130971;TLX1..3_NFIC{dimer}:0.288451684838;ZFP161:0.288219853334;STAT5{A,B}:0.282762352356;GFI1B:0.274212868033;SPZ1:0.27051411934;HES1:0.250506562088;HIC1:0.245572163924;SP1:0.240246053833;AR:0.24003013512;TAL1_TCF{3,4,12}:0.238799409708;HOXA9_MEIS1:0.218811653935;EGR1..3:0.207643247877;BACH2:0.204207723058;EBF1:0.193693998299;ELK1,4_GABP{A,B1}:0.188398737144;POU2F1..3:0.187951377141;NKX2-3_NKX2-5:0.185168963761;MAZ:0.178286114592;NFATC1..3:0.177557330584;HAND1,2:0.147702237517;ESR1:0.13852905237;BREu{core}:0.124126603485;FOXP1:0.118216560581;TGIF1:0.109131452639;PAX3,7:0.093047757221;PAX1,9:0.0806177618024;NKX2-1,4:0.0708106432331;SOX{8,9,10}:0.0687871662136;XBP1:0.0652266615512;FOS_FOS{B,L1}_JUN{B,D}:0.0487965446664;TFAP2B:0.0399755841136;ALX1:0.0392571477971;LEF1_TCF7_TCF7L1,2:0.0383536469336;NFE2L2:0.0238017505965;HOX{A4,D4}:0.00904317530301;MED-1{core}:-0.00635047676443;GLI1..3:-0.0129053319401;ARID5B:-0.0175139857031;AHR_ARNT_ARNT2:-0.0246341969589;MTE{core}:-0.0343150873806;TFCP2:-0.0388114520502;ZBTB6:-0.0399332653266;FOSL2:-0.0446808294881;FOXO1,3,4:-0.0463512349008;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0515639501902;CDX1,2,4:-0.0657409790052;HNF4A_NR2F1,2:-0.0744354596697;HBP1_HMGB_SSRP1_UBTF:-0.0770511407049;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0835674141001;ZBTB16:-0.092693768617;ZNF423:-0.102373291133;RREB1:-0.115037652108;PPARG:-0.115480814009;NANOG:-0.118570424581;SOX5:-0.128641552888;HNF1A:-0.135871118979;TBX4,5:-0.137656041224;HLF:-0.145071020217;TP53:-0.148920931047;HSF1,2:-0.150495567618;SRF:-0.164130605494;PRRX1,2:-0.181715313192;RFX1:-0.191944352592;FOXM1:-0.192135110391;FOX{F1,F2,J1}:-0.198194760499;PAX6:-0.202333116193;RBPJ:-0.205315151969;CREB1:-0.210246295081;NFE2:-0.217381266054;CEBPA,B_DDIT3:-0.221497331343;MYFfamily:-0.225665797196;IKZF1:-0.23033348362;FOX{I1,J2}:-0.233980278854;ELF1,2,4:-0.239541446654;SOX2:-0.241544272033;POU5F1:-0.242196026373;RFX2..5_RFXANK_RFXAP:-0.262753929438;CUX2:-0.279151290554;ATF6:-0.303718471653;MTF1:-0.310945320008;GCM1,2:-0.312101432126;RUNX1..3:-0.338533671741;NR5A1,2:-0.342927348395;FOXA2:-0.35597178131;MEF2{A,B,C,D}:-0.359333899071;JUN:-0.38025012207;CRX:-0.384373948403;NR6A1:-0.388512084801;BPTF:-0.401907101427;NHLH1,2:-0.402306927959;ZNF148:-0.415993138762;ESRRA:-0.418413299441;GATA6:-0.451711349412;SPI1:-0.454715260926;NFKB1_REL_RELA:-0.455976694334;FOXN1:-0.460356831491;FOXP3:-0.464919514116;bHLH_family:-0.467469997646;HMGA1,2:-0.471044716553;DMAP1_NCOR{1,2}_SMARC:-0.473843951591;IRF7:-0.481256507876;TBP:-0.491013577399;SPIB:-0.497423801917;REST:-0.524439931518;HOX{A6,A7,B6,B7}:-0.525802877125;ZNF384:-0.534192057309;OCT4_SOX2{dimer}:-0.560032222845;RXRA_VDR{dimer}:-0.564616993872;IRF1,2:-0.572685666181;NFIL3:-0.578035162301;NFE2L1:-0.584262184237;ATF4:-0.584307312929;ATF5_CREB3:-0.589534368542;IKZF2:-0.591236481849;ADNP_IRX_SIX_ZHX:-0.596571589128;ETS1,2:-0.60258327953;SMAD1..7,9:-0.620914226317;SNAI1..3:-0.638285973988;HMX1:-0.673832017309;RORA:-0.765943825669;VSX1,2:-0.77049651252;MYOD1:-0.776196937529;NKX3-2:-0.785853404734;MAFB:-0.788009169757;POU6F1:-0.789966318911;STAT2,4,6:-0.8206483194;EP300:-0.86795885305;PAX2:-0.884372527909;FOXL1:-0.8855241496;ZEB1:-0.942101661359;ATF2:-0.949280287919;LMO2:-0.952669480575;HIF1A:-0.974516251619;FOX{D1,D2}:-0.990594345423;SREBF1,2:-1.00036881172;DBP:-1.03247887502;TLX2:-1.36610531701
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11319-117D5;search_select_hide=table117:FF:11319-117D5
}}
}}

Latest revision as of 16:33, 3 June 2020

Name:Fibroblast - Periodontal Ligament, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11962
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueperiodontal ligament
dev stagefetus
sexunknown
agefetal
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1847
catalog numberSC2635
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005857
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11962 CAGE DRX008275 DRR009147
Accession ID Hg19

Library idBAMCTSS
CNhs11962 DRZ000572 DRZ001957
Accession ID Hg38

Library idBAMCTSS
CNhs11962 DRZ011922 DRZ013307
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005857
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.AGTTCC sRNA-Seq DRX037044 DRR041410
Accession ID Hg19

Library idBAMCTSS
SRhi10004.AGTTCC DRZ007052


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0438
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.638
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0512
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.016
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0536
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0435
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0512
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.301
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.12
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0715
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.633
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0149
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0512
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.589
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.166
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0512
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.097
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0512
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.138
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.176
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.301
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11962

Jaspar motifP-value
MA0002.20.00463
MA0003.10.0837
MA0004.10.351
MA0006.10.951
MA0007.10.989
MA0009.10.373
MA0014.10.621
MA0017.10.0136
MA0018.20.0804
MA0019.10.251
MA0024.12.45503e-10
MA0025.10.0158
MA0027.10.647
MA0028.10.184
MA0029.10.416
MA0030.10.431
MA0031.10.148
MA0035.20.0134
MA0038.12.69393e-4
MA0039.20.95
MA0040.10.521
MA0041.10.24
MA0042.10.541
MA0043.10.00978
MA0046.10.891
MA0047.20.534
MA0048.16.31088e-4
MA0050.12.72588e-5
MA0051.13.95241e-4
MA0052.10.626
MA0055.10.0107
MA0057.10.906
MA0058.10.147
MA0059.10.259
MA0060.18.12898e-13
MA0061.12.21921e-4
MA0062.20.39
MA0065.20.0116
MA0066.10.623
MA0067.10.0229
MA0068.10.138
MA0069.10.267
MA0070.10.197
MA0071.10.738
MA0072.10.737
MA0073.10.493
MA0074.10.77
MA0076.10.253
MA0077.10.526
MA0078.10.867
MA0079.20.723
MA0080.21.36476e-12
MA0081.10.0812
MA0083.10.24
MA0084.10.0465
MA0087.10.984
MA0088.10.0533
MA0090.10.589
MA0091.10.427
MA0092.10.111
MA0093.10.34
MA0099.20.102
MA0100.10.0706
MA0101.10.0114
MA0102.20.00747
MA0103.17.40948e-4
MA0104.20.567
MA0105.16.66588e-5
MA0106.10.875
MA0107.12.92615e-4
MA0108.20.163
MA0111.10.732
MA0112.20.00103
MA0113.10.71
MA0114.10.0571
MA0115.10.905
MA0116.10.00808
MA0117.10.445
MA0119.10.957
MA0122.10.377
MA0124.10.435
MA0125.10.37
MA0131.10.363
MA0135.10.358
MA0136.13.20723e-11
MA0137.20.21
MA0138.20.382
MA0139.10.156
MA0140.10.247
MA0141.10.501
MA0142.10.42
MA0143.10.301
MA0144.10.103
MA0145.10.114
MA0146.10.987
MA0147.10.662
MA0148.10.243
MA0149.10.899
MA0150.10.0137
MA0152.10.0316
MA0153.10.143
MA0154.10.0019
MA0155.10.187
MA0156.18.10281e-5
MA0157.10.113
MA0159.16.86847e-4
MA0160.10.148
MA0162.10.837
MA0163.10.042
MA0164.10.605
MA0258.10.0173
MA0259.10.814



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11962

Novel motifP-value
10.263
100.988
1000.839
1010.542
1020.936
1030.0786
1040.843
1050.464
1060.00116
1070.286
1080.481
1090.373
110.454
1100.577
1110.683
1120.0446
1130.102
1140.0407
1150.707
1160.791
1170.814
1180.643
1190.2
120.968
1200.3
1210.832
1220.0603
1230.0525
1240.425
1250.771
1260.695
1270.519
1280.106
1290.208
130.486
1300.0135
1310.226
1320.883
1330.313
1340.306
1350.00135
1360.464
1370.199
1380.116
1395.99888e-5
140.163
1400.943
1410.535
1420.963
1430.0717
1440.666
1450.936
1460.881
1470.72
1480.114
1490.254
150.181
1500.784
1510.179
1520.0471
1530.877
1540.979
1550.188
1560.589
1570.101
1580.0204
1590.188
160.615
1600.744
1610.571
1620.206
1630.802
1640.593
1650.275
1660.993
1670.26
1680.287
1690.0421
170.22
180.567
190.992
20.66
200.578
210.298
220.597
230.0545
240.954
250.336
260.756
270.247
280.476
290.57
30.355
300.933
310.497
320.96
330.921
340.444
350.245
360.0882
370.132
380.402
390.794
40.457
400.172
410.0452
420.732
430.22
440.38
450.274
460.382
470.43
480.59
490.19
50.1
500.546
510.552
520.184
530.361
540.728
550.934
560.888
570.785
580.0491
590.471
60.932
600.00905
610.678
620.0486
630.735
640.514
650.13
660.0884
670.519
680.54
690.478
70.155
700.0308
710.233
720.249
730.11
740.957
750.244
760.766
770.329
780.631
790.842
80.512
800.00708
810.415
820.00592
830.381
840.937
850.00226
860.285
870.339
880.461
890.0601
90.461
900.279
910.866
920.105
930.752
940.311
950.347
960.284
970.966
980.102
990.0264



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11962


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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