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(Created page with "{{f5samples |id=FF:11395-118C9 |name=Fibroblast - Periodontal Ligament, donor3 |sample_id=11395 |rna_tube_id=118C9 |rna_box=118 |rna_position=C9 |sample_cell_lot=N/A |...")
 
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{{f5samples
{{f5samples
|id=FF:11395-118C9
|DRA_sample_Accession=CAGE@SAMD00005345
|name=Fibroblast - Periodontal Ligament, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005345
|sample_id=11395
|accession_numbers=CAGE;DRX008276;DRR009148;DRZ000573;DRZ001958;DRZ011923;DRZ013308
|rna_tube_id=118C9
|accession_numbers_RNASeq=sRNA-Seq;DRX037029;DRR041395;DRZ007037
|rna_box=118
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129
|rna_position=C9
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=437.00000
|rna_catalog_number=SC2635
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=fetus
|sample_tissue=periodontal ligament
|sample_donor(cell lot)=
|sample_sex=unknown
|sample_age=fetal
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=fibroblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.29400
|sample_note=
|profile_hcage=CNhs11907,LSID834,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10003,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000057,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0002320,CL:0002371,CL:0002556
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0001758,UBERON:0002384,UBERON:0003672
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000067
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.94!97.80!PRRX1;;chr1:170633348..170633399,+!p2@PRRX1!1.80!82.84!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.78!97.53!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.63!52.64!TFAP2C;;chr6:34204921..34204939,+!p3@HMGA1!1.60!1104.38!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!1.55!42.67!FOXF1;;chr15:42749722..42749739,-!p2@ZFP106!1.54!59.57!ZFP106;;chr2:19558373..19558392,-!p1@OSR1!1.52!85.06!OSR1;;chr14:37131058..37131139,+!p1@PAX9!1.49!29.65!PAX9;;chr11:65686802..65686818,+!p6@DRAP1!1.36!37.40!DRAP1;;chr6:1389789..1389821,+!p1@FOXF2!1.33!27.98!FOXF2;;chr2:239756671..239756732,+!p1@TWIST2!1.31!60.95!TWIST2;;chr11:46299199..46299233,+!p1@CREB3L1!1.30!95.03!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!1.30!19.12!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.29!18.29!SIX2;;chr14:61116183..61116208,-!p1@SIX1!1.28!67.33!SIX1;;chr1:170633262..170633285,+!p3@PRRX1!1.27!20.23!PRRX1;;chr16:86600426..86600441,+!p1@FOXC2!1.26!42.39!FOXC2;;chr12:66218598..66218645,+!p2@HMGA2!1.25!75.92!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.24!44.05!HMGA2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.23!16.90!GLIS1;;chr3:141121847..141121868,+!p5@ZBTB38!1.20!22.72!ZBTB38;;chr11:65667846..65667868,-!p1@FOSL1!1.16!353.81!FOSL1;;chr7:14029283..14029311,-!p1@ETV1!1.15!70.37!ETV1;;chr11:65667884..65667895,-!p2@FOSL1!1.15!50.70!FOSL1;;chr11:65686732..65686756,+!p2@DRAP1!1.14!54.58!DRAP1;;chr2:102091566..102091581,-!p1@RFX8!1.13!12.47!RFX8;;chr2:96012397..96012417,+!p3@KCNIP3!1.12!12.19!KCNIP3;;chr3:141105705..141105770,+!p4@ZBTB38!1.11!14.41!ZBTB38;;chr9:96717629..96717644,-!p1@BARX1!1.10!11.64!BARX1;;chr20:42543441..42543497,+!p1@TOX2!1.08!50.43!TOX2;;chr7:19157248..19157268,-!p1@TWIST1!1.08!30.48!TWIST1;;chr2:239756739..239756755,+!p2@TWIST2!1.07!18.29!TWIST2;;chr1:170632723..170632739,+!p8@PRRX1!1.06!10.53!PRRX1;;chr20:55205825..55205847,+!p2@TFAP2C!1.06!10.53!TFAP2C;;chr9:132427883..132427951,+!p2@PRRX2!1.06!10.53!PRRX2;;chr1:170633058..170633084,+!p5@PRRX1!1.05!10.25!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!1.04!9.97!ZFY;;chr8:93074803..93074845,-!p1@RUNX1T1!1.04!9.97!RUNX1T1;;chr1:170632137..170632172,+!p10@PRRX1!1.03!9.70!PRRX1;;chr20:39946361..39946379,-!p2@ZHX3!1.02!28.54!ZHX3;;chr3:157823517..157823562,-!p1@SHOX2!1.02!10.25!SHOX2;;chr2:200323414..200323455,-!p1@SATB2!1.01!20.23!SATB2;;chr2:200322654..200322707,-!p2@SATB2!0.98!12.47!SATB2;;chr1:170632959..170632987,+!p4@PRRX1!0.98!9.42!PRRX1;;chr10:28034739..28034756,-!p1@MKX!0.98!8.59!MKX;;chr8:93074848..93074871,-!p3@RUNX1T1!0.97!8.31!RUNX1T1;;chr12:66218212..66218244,+!p5@HMGA2!0.96!11.91!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!0.96!8.03!TCF12;;chr12:115121962..115121987,-!p1@TBX3!0.95!68.71!TBX3;;chr3:141087393..141087426,+!p3@ZBTB38!0.95!32.69!ZBTB38;;chr2:223163706..223163730,-!p1@PAX3!0.94!7.76!PAX3;;chr1:170632115..170632136,+!p9@PRRX1!0.94!7.76!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.94!7.76!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.94!7.76!KDM5D;;chr9:132427972..132428056,+!p1@PRRX2!0.92!9.70!PRRX2;;chr2:102091144..102091183,-!p2@RFX8!0.91!7.20!RFX8;;chr18:52969844..52969895,-!p27@TCF4!0.91!7.20!TCF4;;chr6:10412600..10412637,-!p1@TFAP2A!0.90!11.91!TFAP2A;;chr9:77112244..77112262,+!p1@RORB!0.90!7.76!RORB;;chr12:115122318..115122331,-!p2@TBX3!0.90!6.93!TBX3;;chr2:96012353..96012378,+!p4@KCNIP3!0.90!6.93!KCNIP3;;chr3:141121820..141121838,+!p9@ZBTB38!0.90!6.93!ZBTB38;;chr1:25256756..25256774,-!p1@RUNX3!0.89!13.02!RUNX3;;chr4:81118647..81118666,+!p1@PRDM8!0.89!9.14!PRDM8;;chr19:13134772..13134822,+!p2@NFIX!0.88!9.97!NFIX;;chr10:63809106..63809127,+!p1@ARID5B!0.87!91.43!ARID5B;;chr6:85473156..85473210,-!p2@TBX18!0.87!8.03!TBX18;;chr5:139492456..139492489,+!p7@PURA!0.87!6.37!PURA;;chr1:170632439..170632465,+!p11@PRRX1!0.87!6.37!PRRX1;;chr3:141087339..141087387,+!p2@ZBTB38!0.86!67.60!ZBTB38;;chrX:66763856..66763896,+!p1@AR!0.86!9.14!AR;;chr6:10415276..10415341,-!p2@TFAP2A!0.86!7.76!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!0.85!60.40!HMGA2;;chr20:42543506..42543549,+!p2@TOX2!0.84!14.96!TOX2;;chr12:115122005..115122016,-!p3@TBX3!0.84!7.20!TBX3;;chr12:115121802..115121814,-!p5@TBX3!0.83!5.82!TBX3;;chr4:299227..299272,-!p1@ZNF732!0.82!5.54!ZNF732;;chr7:44143925..44143970,+!p1@AEBP1!0.80!128.28!AEBP1;;chr7:14029312..14029325,-!p4@ETV1!0.78!6.37!ETV1;;chr2:172949484..172949522,+!p1@DLX1!0.78!4.99!DLX1;;chr2:96012298..96012317,+!p6@KCNIP3!0.78!4.99!KCNIP3;;chr16:86600870..86600921,+!p2@FOXC2!0.78!4.99!FOXC2;;chr12:96588219..96588263,+!p2@ELK3!0.77!38.51!ELK3;;chr11:46299539..46299620,+!p2@CREB3L1!0.77!8.59!CREB3L1;;chr12:66218904..66218913,+!p11@HMGA2!0.76!4.71!HMGA2;;chr1:170632051..170632081,+!p16@PRRX1!0.76!4.71!PRRX1;;chr3:114343039..114343085,-!p8@ZBTB20!0.76!4.71!ZBTB20;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.51!SNAI2;;chr7:17338266..17338282,+!p1@AHR!0.74!54.03!AHR;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.86!SNAI2;;chr12:66218573..66218596,+!p7@HMGA2!0.74!6.93!HMGA2;;chr10:31607702..31607755,+!p3@ZEB1!0.74!5.26!ZEB1;;chr14:61116168..61116180,-!p2@SIX1!0.74!5.26!SIX1;;chr18:52969674..52969685,-!p24@TCF4!0.74!4.43!TCF4;;chr1:170632310..170632321,+!p15@PRRX1!0.74!4.43!PRRX1;;chr17:41277372..41277418,-!p1@BRCA1!0.73!17.46!BRCA1;;chr6:34204973..34204990,+!p4@HMGA1!0.72!63.72!HMGA1;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.72!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.72!24.66!HIF1A;;chr7:19157043..19157088,-!p2@TWIST1!0.71!11.36!TWIST1;;chr6:1389824..1389840,+!p3@FOXF2!0.71!4.16!FOXF2;;chr6:34204672..34204692,+!p1@HMGA1!0.70!511.18!HMGA1;;chr12:96588143..96588185,+!p1@ELK3!0.69!54.03!ELK3;;chr17:56065729..56065781,-!p2@VEZF1!0.69!18.84!VEZF1;;chr5:139487608..139487663,+!p3@PURA!0.69!9.14!PURA;;chr9:102584159..102584174,+!p2@NR4A3!0.69!7.48!NR4A3;;chr7:14028488..14028516,-!p2@ETV1!0.69!4.43!ETV1;;chr12:115122303..115122314,-!p6@TBX3!0.69!3.88!TBX3;;chr12:2986206..2986258,-!p2@FOXM1!0.68!26.04!FOXM1;;chr4:4861385..4861398,+!p1@MSX1!0.68!12.47!MSX1;;chr8:67525473..67525518,-!p1@MYBL1!0.68!9.42!MYBL1;;chr17:7492684..7492778,-!p2@SOX15!0.67!8.59!SOX15;;chr12:66218183..66218209,+!p4@HMGA2!0.67!7.76!HMGA2;;chr11:65687362..65687436,+!p3@DRAP1!0.66!18.56!DRAP1;;chr12:115121770..115121781,-!p4@TBX3!0.66!3.60!TBX3;;chr14:37126765..37126799,+!p2@PAX9!0.66!3.60!PAX9;;chr19:13135386..13135435,+!p4@NFIX!0.66!3.60!NFIX;;chr6:1389989..1390019,+!p2@FOXF2!0.66!3.60!FOXF2;;chr2:45236579..45236596,-!p2@SIX2!0.66!3.60!SIX2;;chr3:141121871..141121885,+!p13@ZBTB38!0.66!3.60!ZBTB38;;chr1:170633245..170633256,+!p14@PRRX1!0.66!3.60!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.66!3.60!LHX8;;chr20:55205791..55205817,+!p3@TFAP2C!0.66!3.60!TFAP2C;;chr10:31608127..31608156,+!p1@ZEB1!0.65!74.81!ZEB1;;chr10:63809134..63809145,+!p6@ARID5B!0.65!8.87!ARID5B;;chr19:13134457..13134462,+!p5@NFIX!0.65!6.65!NFIX;;chr11:65687243..65687276,+!p8@DRAP1!0.65!4.99!DRAP1;;chr11:6947647..6947698,+!p2@ZNF215!0.65!4.99!ZNF215;;chr5:321810..321877,+!p1@AHRR!0.64!12.19!AHRR;;chr9:102584262..102584276,+!p1@NR4A3!0.64!8.31!NR4A3;;chr6:85474299..85474324,-!p1@TBX18!0.64!6.65!TBX18;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.54!HMGA2;;chr1:158985493..158985535,+!p4@IFI16!0.64!5.54!IFI16;;chr2:95963052..95963106,+!p1@KCNIP3!0.64!3.32!KCNIP3;;chrX:66763914..66763933,+!p3@AR!0.64!3.32!AR;;chr12:2986275..2986363,-!p1@FOXM1!0.63!38.51!FOXM1;;chr7:44143978..44143989,+!p2@AEBP1!0.63!6.65!AEBP1;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.88!BNC1;;chr17:59477233..59477263,+!p1@TBX2!0.62!11.36!TBX2;;chr4:26322267..26322334,+!p3@RBPJ!0.62!8.59!RBPJ;;chr20:39946400..39946423,-!p3@ZHX3!0.62!6.37!ZHX3;;chr1:158979792..158979814,+!p2@IFI16!0.61!34.91!IFI16;;chr11:12696002..12696022,+!p2@TEAD1!0.61!8.59!TEAD1;;chr7:137686763..137686784,-!p5@CREB3L2!0.61!5.82!CREB3L2;;chr2:231084820..231084836,-!p5@SP110!0.61!3.60!SP110;;chr2:172950227..172950249,+!p2@DLX1!0.61!3.05!DLX1;;chr1:170632683..170632696,+!p12@PRRX1!0.61!3.05!PRRX1;;chr16:86600458..86600461,+!p3@FOXC2!0.61!3.05!FOXC2;;chr12:53614115..53614154,-!p1@RARG!0.60!19.12!RARG;;chr3:12329358..12329393,+!p3@PPARG!0.60!8.31!PPARG;;chr3:12329397..12329433,+!p2@PPARG!0.60!7.76!PPARG;;chr3:114343826..114343869,-!p4@ZBTB20!0.60!6.65!ZBTB20;;chrX:66763815..66763854,+!p2@AR!0.60!4.16!AR;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.59!15.52!TAL1;;chr14:75988771..75988826,+!p1@BATF!0.59!4.16!BATF;;chr6:42419316..42419340,-!p4@TRERF1!0.58!4.71!TRERF1;;chr11:65668011..65668020,-!p3@FOSL1!0.58!2.77!FOSL1;;chr12:66218923..66218934,+!p14@HMGA2!0.58!2.77!HMGA2;;chr12:77459306..77459365,-!p1@E2F7!0.57!41.84!E2F7;;chr22:41697497..41697515,+!p2@ZC3H7B!0.57!8.87!ZC3H7B;;chr8:67525443..67525459,-!p2@MYBL1!0.57!4.43!MYBL1;;chr19:3366570..3366619,+!p1@NFIC!0.56!104.73!NFIC;;chr6:155635583..155635644,-!p1@TFB1M!0.56!42.39!TFB1M;;chr11:65687222..65687240,+!p7@DRAP1!0.56!3.60!DRAP1;;chr4:81104985..81105005,+!p4@PRDM8!0.56!3.32!PRDM8;;chr7:137686791..137686821,-!p1@CREB3L2!0.55!92.54!CREB3L2;;chr3:185826764..185826803,-!p2@ETV5!0.55!11.64!ETV5;;chr18:52989031..52989079,-!p2@TCF4!0.55!6.93!TCF4;;chr19:53496768..53496799,-!p1@ZNF702P!0.55!4.43!ZNF702P;;chr14:62162224..62162254,+!p1@HIF1A!0.54!460.48!HIF1A;;chr7:42276822..42276895,-!p2@GLI3!0.54!8.87!GLI3;;chr6:45390025..45390076,+!p2@RUNX2!0.54!6.93!RUNX2;;chr17:41622765..41622821,-!p2@ETV4!0.54!4.16!ETV4;;chr12:66218443..66218461,+!p8@HMGA2!0.54!3.32!HMGA2;;chr11:65686776..65686787,+!p9@DRAP1!0.54!3.05!DRAP1;;chr12:85673977..85674015,+!p1@ALX1!0.54!2.49!ALX1;;chr14:74256787..74256858,-!p6@C14orf43!0.54!2.49!C14orf43;;chr19:2867325..2867348,+!p1@ZNF556!0.54!2.49!ZNF556;;chr6:134210243..134210257,+!p1@TCF21!0.54!2.49!TCF21;;chr8:116673894..116673913,-!p12@TRPS1!0.54!2.49!TRPS1;;chr19:9609272..9609297,-!p1@ZNF560!0.54!2.49!ZNF560;;chr1:170632762..170632786,+!p13@PRRX1!0.54!2.49!PRRX1;;chr3:141087562..141087594,+!p12@ZBTB38!0.54!2.49!ZBTB38;;chr14:73360799..73360817,-!p1@DPF3!0.53!10.25!DPF3;;chr9:16870710..16870763,-!p1@BNC2!0.53!4.71!BNC2;;chr11:46299186..46299195,+!p3@CREB3L1!0.53!2.77!CREB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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor3.CNhs11907.11395-118C9.hg38.nobarcode.ctss.bed.gz
|id=FF:11395-118C9
|is_a=EFO:0002091;;FF:0000067
|is_obsolete=
|library_id=CNhs11907
|library_id_phase_based=2:CNhs11907
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11395
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GTTTCG.11395
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11395
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GTTTCG.11395
|name=Fibroblast - Periodontal Ligament, donor3
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11907,LSID834,release010,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10003,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=118
|rna_catalog_number=SC2635
|rna_concentration=0.294
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=437
|rna_od260/230=
|rna_od260/280=
|rna_position=C9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=118C9
|rna_weight_ug=10
|rnaseq_library_id=SRhi10003.GTTTCG
|sample_age=fetal
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=fibroblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=fetus
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.39116541173091e-253!GO:0043226;organelle;7.45291842910554e-200!GO:0043229;intracellular organelle;1.57171222799779e-199!GO:0043231;intracellular membrane-bound organelle;1.2029816165298e-196!GO:0043227;membrane-bound organelle;1.49890658614057e-196!GO:0005737;cytoplasm;1.74918184016238e-183!GO:0044422;organelle part;1.66747035472783e-149!GO:0044446;intracellular organelle part;7.16233676042384e-148!GO:0044444;cytoplasmic part;1.06191368753648e-124!GO:0032991;macromolecular complex;2.14110011168465e-95!GO:0044238;primary metabolic process;1.57016581455099e-92!GO:0044237;cellular metabolic process;2.03851616527657e-90!GO:0005634;nucleus;1.33501664598075e-86!GO:0043170;macromolecule metabolic process;2.05419607038261e-84!GO:0044428;nuclear part;6.74694088660655e-77!GO:0030529;ribonucleoprotein complex;2.4448875966125e-75!GO:0005515;protein binding;2.1729931518028e-74!GO:0043233;organelle lumen;5.34082795313797e-73!GO:0031974;membrane-enclosed lumen;5.34082795313797e-73!GO:0003723;RNA binding;2.47386368654692e-69!GO:0005739;mitochondrion;5.27479413329495e-54!GO:0016043;cellular component organization and biogenesis;1.10587378521758e-53!GO:0031090;organelle membrane;1.02062607694604e-50!GO:0043283;biopolymer metabolic process;4.72165511584513e-50!GO:0043234;protein complex;1.20517956980505e-49!GO:0019538;protein metabolic process;4.20443174090575e-49!GO:0006396;RNA processing;1.53764140128947e-47!GO:0031981;nuclear lumen;2.82364112577909e-46!GO:0015031;protein transport;4.70176161555e-46!GO:0033036;macromolecule localization;7.44843638167133e-46!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.3089778752114e-43!GO:0044260;cellular macromolecule metabolic process;2.66147147599461e-43!GO:0044267;cellular protein metabolic process;7.24701207925306e-43!GO:0005840;ribosome;4.06428707290929e-42!GO:0006412;translation;5.10128149829191e-42!GO:0045184;establishment of protein localization;1.39650032139394e-41!GO:0008104;protein localization;1.50831884065248e-41!GO:0010467;gene expression;1.22228515547113e-40!GO:0016071;mRNA metabolic process;6.80023826256086e-39!GO:0031967;organelle envelope;1.24192332992692e-37!GO:0046907;intracellular transport;1.5939136071784e-37!GO:0031975;envelope;2.12511538118795e-37!GO:0044429;mitochondrial part;2.49347690954475e-37!GO:0009058;biosynthetic process;2.88126231499208e-37!GO:0043228;non-membrane-bound organelle;7.39828594740902e-37!GO:0043232;intracellular non-membrane-bound organelle;7.39828594740902e-37!GO:0003735;structural constituent of ribosome;8.48870855426182e-36!GO:0005829;cytosol;5.57563474927897e-35!GO:0006996;organelle organization and biogenesis;5.9382530572963e-35!GO:0008380;RNA splicing;8.92957644338386e-35!GO:0065003;macromolecular complex assembly;3.74677498373397e-34!GO:0009059;macromolecule biosynthetic process;7.68697262047476e-33!GO:0006397;mRNA processing;1.00658802093708e-32!GO:0044249;cellular biosynthetic process;1.05007969330467e-32!GO:0006259;DNA metabolic process;2.65164583809494e-32!GO:0006886;intracellular protein transport;2.09530723368318e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.09530723368318e-31!GO:0022607;cellular component assembly;1.75245116885882e-30!GO:0033279;ribosomal subunit;6.48890374809506e-30!GO:0005654;nucleoplasm;2.99073392080778e-29!GO:0007049;cell cycle;8.48092429634173e-29!GO:0000166;nucleotide binding;8.12578158737032e-27!GO:0003676;nucleic acid binding;3.14210881019695e-26!GO:0051641;cellular localization;2.10655904521914e-25!GO:0051649;establishment of cellular localization;2.9734747653463e-25!GO:0012505;endomembrane system;4.30574618636314e-24!GO:0005681;spliceosome;4.58882156000319e-24!GO:0044451;nucleoplasm part;9.78999383092332e-24!GO:0005740;mitochondrial envelope;2.08526596830994e-23!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.78965665288024e-23!GO:0016462;pyrophosphatase activity;1.5656664315911e-22!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.01610989390812e-22!GO:0017111;nucleoside-triphosphatase activity;2.88293472393801e-22!GO:0016817;hydrolase activity, acting on acid anhydrides;3.37019947423393e-22!GO:0000278;mitotic cell cycle;4.54904163127474e-22!GO:0031966;mitochondrial membrane;5.65689564735201e-22!GO:0022402;cell cycle process;3.15799649880355e-21!GO:0019866;organelle inner membrane;1.1426878913457e-20!GO:0006457;protein folding;1.57673672871665e-20!GO:0016874;ligase activity;2.28557330586607e-19!GO:0017076;purine nucleotide binding;2.78774968578132e-19!GO:0044445;cytosolic part;2.95651744818341e-19!GO:0006974;response to DNA damage stimulus;3.39407482565875e-19!GO:0006512;ubiquitin cycle;4.09112154976265e-19!GO:0005783;endoplasmic reticulum;5.27983209690155e-19!GO:0016070;RNA metabolic process;5.27983209690155e-19!GO:0005743;mitochondrial inner membrane;6.05983577121586e-19!GO:0048770;pigment granule;7.22965929901889e-19!GO:0042470;melanosome;7.22965929901889e-19!GO:0032553;ribonucleotide binding;7.60514339705677e-19!GO:0032555;purine ribonucleotide binding;7.60514339705677e-19!GO:0022618;protein-RNA complex assembly;8.7118948542777e-19!GO:0005730;nucleolus;3.38272917350495e-18!GO:0000087;M phase of mitotic cell cycle;3.77671852581226e-18!GO:0007067;mitosis;1.02414913596082e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.24052313914174e-17!GO:0006511;ubiquitin-dependent protein catabolic process;1.97638304033194e-17!GO:0005794;Golgi apparatus;2.31147375156509e-17!GO:0043285;biopolymer catabolic process;2.53191136167736e-17!GO:0019941;modification-dependent protein catabolic process;2.56211874101836e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.56211874101836e-17!GO:0044265;cellular macromolecule catabolic process;3.39502216788057e-17!GO:0044257;cellular protein catabolic process;3.95758871270524e-17!GO:0006119;oxidative phosphorylation;5.00139637019714e-17!GO:0031980;mitochondrial lumen;8.31441365830008e-17!GO:0005759;mitochondrial matrix;8.31441365830008e-17!GO:0005694;chromosome;8.46457381029679e-17!GO:0051301;cell division;8.63759609610458e-17!GO:0005524;ATP binding;1.04043571393475e-16!GO:0030554;adenyl nucleotide binding;1.4699099339234e-16!GO:0008135;translation factor activity, nucleic acid binding;1.79430008795774e-16!GO:0032559;adenyl ribonucleotide binding;2.88084094615768e-16!GO:0044432;endoplasmic reticulum part;2.94073608708433e-16!GO:0022403;cell cycle phase;3.29859803847321e-16!GO:0006281;DNA repair;4.5359575157589e-16!GO:0015935;small ribosomal subunit;1.03914934449671e-15!GO:0048193;Golgi vesicle transport;2.12110176509168e-15!GO:0009057;macromolecule catabolic process;2.25605046633757e-15!GO:0008134;transcription factor binding;2.75246366912708e-15!GO:0006605;protein targeting;2.97738424981357e-15!GO:0030163;protein catabolic process;3.24049907341968e-15!GO:0016192;vesicle-mediated transport;3.46807120488283e-15!GO:0005635;nuclear envelope;3.51562064680779e-15!GO:0015934;large ribosomal subunit;5.99333985767543e-15!GO:0043412;biopolymer modification;9.69558971245134e-15!GO:0031965;nuclear membrane;1.52045786530888e-14!GO:0044427;chromosomal part;1.58012389807059e-14!GO:0044248;cellular catabolic process;1.89365034227613e-14!GO:0051186;cofactor metabolic process;2.30148262202613e-14!GO:0009719;response to endogenous stimulus;2.4412544951306e-14!GO:0000502;proteasome complex (sensu Eukaryota);3.86278562975412e-14!GO:0051276;chromosome organization and biogenesis;5.34999752287443e-14!GO:0000279;M phase;6.90183972609597e-14!GO:0044453;nuclear membrane part;6.95201331426318e-14!GO:0044455;mitochondrial membrane part;8.98961450432242e-14!GO:0003743;translation initiation factor activity;1.90343628966132e-13!GO:0042254;ribosome biogenesis and assembly;3.70382267767687e-13!GO:0006464;protein modification process;9.68621948116784e-13!GO:0016604;nuclear body;9.770233452935e-13!GO:0006413;translational initiation;1.01055934618679e-12!GO:0051082;unfolded protein binding;1.08387633269743e-12!GO:0006260;DNA replication;1.19891182646928e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.32420439921543e-12!GO:0000375;RNA splicing, via transesterification reactions;1.32420439921543e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.32420439921543e-12!GO:0042623;ATPase activity, coupled;3.57791017475179e-12!GO:0016887;ATPase activity;3.79448364903534e-12!GO:0005793;ER-Golgi intermediate compartment;4.60889890940559e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.07042441587701e-12!GO:0006913;nucleocytoplasmic transport;6.22991019481045e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.95475246357188e-12!GO:0004386;helicase activity;9.61468619447788e-12!GO:0051169;nuclear transport;1.46890463275245e-11!GO:0005761;mitochondrial ribosome;1.76553685086035e-11!GO:0000313;organellar ribosome;1.76553685086035e-11!GO:0005746;mitochondrial respiratory chain;1.77173426739189e-11!GO:0008639;small protein conjugating enzyme activity;1.77350283393463e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.99374850144357e-11!GO:0051726;regulation of cell cycle;2.42672875488196e-11!GO:0005789;endoplasmic reticulum membrane;2.44252341949145e-11!GO:0000074;regulation of progression through cell cycle;2.59028981255273e-11!GO:0043687;post-translational protein modification;2.95885224103639e-11!GO:0005643;nuclear pore;3.08891987649994e-11!GO:0004842;ubiquitin-protein ligase activity;3.73080564649946e-11!GO:0015630;microtubule cytoskeleton;3.73131073467868e-11!GO:0006732;coenzyme metabolic process;4.19307437602162e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.23660643966983e-11!GO:0006446;regulation of translational initiation;5.3556298289877e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;5.71652164464152e-11!GO:0019787;small conjugating protein ligase activity;7.17614598852836e-11!GO:0006461;protein complex assembly;1.1764565191003e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.26213284139549e-10!GO:0006323;DNA packaging;1.79622000828981e-10!GO:0006403;RNA localization;2.30666968188544e-10!GO:0050657;nucleic acid transport;2.36344543848961e-10!GO:0051236;establishment of RNA localization;2.36344543848961e-10!GO:0050658;RNA transport;2.36344543848961e-10!GO:0003712;transcription cofactor activity;2.455196520359e-10!GO:0008565;protein transporter activity;3.19269361476569e-10!GO:0016607;nuclear speck;3.62559374172308e-10!GO:0050136;NADH dehydrogenase (quinone) activity;5.25733752597638e-10!GO:0003954;NADH dehydrogenase activity;5.25733752597638e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.25733752597638e-10!GO:0009259;ribonucleotide metabolic process;6.26933506750233e-10!GO:0050794;regulation of cellular process;6.37273199083681e-10!GO:0046930;pore complex;6.54596590892679e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.36392032487631e-10!GO:0008026;ATP-dependent helicase activity;7.73266255619756e-10!GO:0006163;purine nucleotide metabolic process;1.0702165441231e-09!GO:0006366;transcription from RNA polymerase II promoter;1.76611976872164e-09!GO:0016881;acid-amino acid ligase activity;1.78152681944101e-09!GO:0012501;programmed cell death;1.9556799259905e-09!GO:0042775;organelle ATP synthesis coupled electron transport;2.70112884027971e-09!GO:0042773;ATP synthesis coupled electron transport;2.70112884027971e-09!GO:0006888;ER to Golgi vesicle-mediated transport;2.87144061877011e-09!GO:0006915;apoptosis;2.92156048100873e-09!GO:0006399;tRNA metabolic process;2.94752504184959e-09!GO:0065002;intracellular protein transport across a membrane;3.53835944531291e-09!GO:0009150;purine ribonucleotide metabolic process;4.22005452879827e-09!GO:0006164;purine nucleotide biosynthetic process;9.34936177774858e-09!GO:0005768;endosome;9.38798913948037e-09!GO:0043566;structure-specific DNA binding;1.02810473557762e-08!GO:0030964;NADH dehydrogenase complex (quinone);1.04118881103709e-08!GO:0045271;respiratory chain complex I;1.04118881103709e-08!GO:0005747;mitochondrial respiratory chain complex I;1.04118881103709e-08!GO:0009056;catabolic process;1.19787146265238e-08!GO:0051028;mRNA transport;1.20350949065853e-08!GO:0065004;protein-DNA complex assembly;1.22090267223357e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.31050834915947e-08!GO:0017038;protein import;1.43848086127639e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.44839562383062e-08!GO:0009260;ribonucleotide biosynthetic process;1.48958097349714e-08!GO:0008219;cell death;1.67015179194844e-08!GO:0016265;death;1.67015179194844e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.67015179194844e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.67015179194844e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.67015179194844e-08!GO:0044431;Golgi apparatus part;1.79163047568388e-08!GO:0030120;vesicle coat;1.79549940342261e-08!GO:0030662;coated vesicle membrane;1.79549940342261e-08!GO:0043038;amino acid activation;1.94562587751367e-08!GO:0006418;tRNA aminoacylation for protein translation;1.94562587751367e-08!GO:0043039;tRNA aminoacylation;1.94562587751367e-08!GO:0005813;centrosome;1.9693391306835e-08!GO:0006333;chromatin assembly or disassembly;2.37506476932108e-08!GO:0005819;spindle;2.76493151571366e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.93772836888305e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.06040132628296e-08!GO:0006364;rRNA processing;3.16477840864132e-08!GO:0009141;nucleoside triphosphate metabolic process;3.33474912900042e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.37786219599175e-08!GO:0048523;negative regulation of cellular process;4.60788160109183e-08!GO:0009055;electron carrier activity;5.03639076394885e-08!GO:0048475;coated membrane;5.3294102717364e-08!GO:0030117;membrane coat;5.3294102717364e-08!GO:0009060;aerobic respiration;5.5628890328696e-08!GO:0003697;single-stranded DNA binding;5.63413034363569e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.63413034363569e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.63413034363569e-08!GO:0000785;chromatin;5.96370253007712e-08!GO:0005815;microtubule organizing center;5.96370253007712e-08!GO:0016072;rRNA metabolic process;6.24635538066455e-08!GO:0045333;cellular respiration;6.63553244901778e-08!GO:0003924;GTPase activity;1.16944174721486e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.25939506647077e-07!GO:0051246;regulation of protein metabolic process;1.40797015990575e-07!GO:0000151;ubiquitin ligase complex;1.42465167514948e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.74213827126345e-07!GO:0051188;cofactor biosynthetic process;2.10309578123987e-07!GO:0032446;protein modification by small protein conjugation;2.21926157333833e-07!GO:0046034;ATP metabolic process;2.28429005301293e-07!GO:0019829;cation-transporting ATPase activity;3.11538121398291e-07!GO:0016567;protein ubiquitination;3.30612295411894e-07!GO:0015986;ATP synthesis coupled proton transport;3.57509994903859e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.57509994903859e-07!GO:0016740;transferase activity;5.17308483056519e-07!GO:0009142;nucleoside triphosphate biosynthetic process;5.2842412301634e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.2842412301634e-07!GO:0005788;endoplasmic reticulum lumen;5.31543425596773e-07!GO:0016779;nucleotidyltransferase activity;6.11782189001398e-07!GO:0044440;endosomal part;6.24833890283018e-07!GO:0010008;endosome membrane;6.24833890283018e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.85400399775429e-07!GO:0050789;regulation of biological process;7.14842457853401e-07!GO:0031252;leading edge;7.57949648214926e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.73111362861421e-07!GO:0006099;tricarboxylic acid cycle;9.43068646796022e-07!GO:0046356;acetyl-CoA catabolic process;9.43068646796022e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.75363225279582e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.75363225279582e-07!GO:0051170;nuclear import;9.78808413870578e-07!GO:0016568;chromatin modification;1.01146528746257e-06!GO:0007051;spindle organization and biogenesis;1.0149257138242e-06!GO:0005798;Golgi-associated vesicle;1.18875282204885e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.35426736170043e-06!GO:0003713;transcription coactivator activity;1.39646684234908e-06!GO:0000775;chromosome, pericentric region;1.44055739808056e-06!GO:0048519;negative regulation of biological process;1.51380523572703e-06!GO:0009109;coenzyme catabolic process;1.86505090110426e-06!GO:0006084;acetyl-CoA metabolic process;1.93120491254769e-06!GO:0006606;protein import into nucleus;1.98002544327534e-06!GO:0005667;transcription factor complex;2.28742529353128e-06!GO:0051187;cofactor catabolic process;2.40656310859351e-06!GO:0000139;Golgi membrane;2.45235308179047e-06!GO:0031988;membrane-bound vesicle;2.66514482506808e-06!GO:0006613;cotranslational protein targeting to membrane;2.68778209832162e-06!GO:0000075;cell cycle checkpoint;2.81854048980271e-06!GO:0006916;anti-apoptosis;2.93392170934755e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.93392170934755e-06!GO:0016787;hydrolase activity;3.42309168642703e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.65880733979182e-06!GO:0006754;ATP biosynthetic process;3.71019720547588e-06!GO:0006753;nucleoside phosphate metabolic process;3.71019720547588e-06!GO:0000245;spliceosome assembly;3.90204898506705e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.02627355805863e-06!GO:0007010;cytoskeleton organization and biogenesis;4.34919855230163e-06!GO:0006334;nucleosome assembly;4.60785693419092e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.22530800539005e-06!GO:0051329;interphase of mitotic cell cycle;7.46224948020438e-06!GO:0016859;cis-trans isomerase activity;7.6783626227244e-06!GO:0008654;phospholipid biosynthetic process;7.99276644110187e-06!GO:0016563;transcription activator activity;7.99722800006815e-06!GO:0009108;coenzyme biosynthetic process;8.03849407974613e-06!GO:0043069;negative regulation of programmed cell death;8.09491165478067e-06!GO:0031982;vesicle;9.46126931371374e-06!GO:0043066;negative regulation of apoptosis;9.52689040215708e-06!GO:0007005;mitochondrion organization and biogenesis;9.5291511530811e-06!GO:0043623;cellular protein complex assembly;9.53418894454575e-06!GO:0009117;nucleotide metabolic process;9.59833268929142e-06!GO:0005769;early endosome;1.07519344930748e-05!GO:0016853;isomerase activity;1.11919509858752e-05!GO:0016491;oxidoreductase activity;1.13271714058967e-05!GO:0019899;enzyme binding;1.16468127890064e-05!GO:0003724;RNA helicase activity;1.22061298283932e-05!GO:0006261;DNA-dependent DNA replication;1.26721070651866e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.38096301973871e-05!GO:0006793;phosphorus metabolic process;1.40668086978468e-05!GO:0006796;phosphate metabolic process;1.40668086978468e-05!GO:0031410;cytoplasmic vesicle;1.47501228758623e-05!GO:0019222;regulation of metabolic process;1.58180569258872e-05!GO:0031497;chromatin assembly;1.73795294324308e-05!GO:0031324;negative regulation of cellular metabolic process;1.80278700973407e-05!GO:0042981;regulation of apoptosis;1.85735192959696e-05!GO:0006752;group transfer coenzyme metabolic process;1.98979697869606e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.11796169551502e-05!GO:0045259;proton-transporting ATP synthase complex;2.1994428536495e-05!GO:0051325;interphase;2.22722192436159e-05!GO:0005525;GTP binding;2.29279347554842e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.3308335821551e-05!GO:0043067;regulation of programmed cell death;2.42477720199805e-05!GO:0016126;sterol biosynthetic process;2.48765684377222e-05!GO:0051427;hormone receptor binding;2.81236393832965e-05!GO:0045786;negative regulation of progression through cell cycle;2.94220975089944e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.3998646985216e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.76022431496505e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.15535617863294e-05!GO:0030133;transport vesicle;4.87060130656504e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.91392777023416e-05!GO:0031968;organelle outer membrane;5.42046657881663e-05!GO:0019867;outer membrane;5.62060467135477e-05!GO:0009892;negative regulation of metabolic process;5.79579514434471e-05!GO:0005839;proteasome core complex (sensu Eukaryota);6.08896802241841e-05!GO:0035257;nuclear hormone receptor binding;6.09692301470885e-05!GO:0030867;rough endoplasmic reticulum membrane;6.2629135068802e-05!GO:0006091;generation of precursor metabolites and energy;7.4281751242385e-05!GO:0000776;kinetochore;7.76377258439017e-05!GO:0051252;regulation of RNA metabolic process;8.19545110872321e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.19779412182809e-05!GO:0051168;nuclear export;8.3464134054145e-05!GO:0003682;chromatin binding;9.9742650528978e-05!GO:0006612;protein targeting to membrane;0.000101013855701557!GO:0016310;phosphorylation;0.000105040340136313!GO:0000059;protein import into nucleus, docking;0.000111472203297369!GO:0003899;DNA-directed RNA polymerase activity;0.000113242530992045!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000114005921064713!GO:0003690;double-stranded DNA binding;0.000122117014732356!GO:0005773;vacuole;0.000132407507837452!GO:0005657;replication fork;0.000133863942306036!GO:0043021;ribonucleoprotein binding;0.000138699143897774!GO:0008094;DNA-dependent ATPase activity;0.000149162354001605!GO:0005770;late endosome;0.000149625870315271!GO:0005905;coated pit;0.000154647989546419!GO:0051052;regulation of DNA metabolic process;0.000162952720476185!GO:0051789;response to protein stimulus;0.000166273156084686!GO:0006986;response to unfolded protein;0.000166273156084686!GO:0005048;signal sequence binding;0.000186132117598917!GO:0032561;guanyl ribonucleotide binding;0.000193419436179493!GO:0019001;guanyl nucleotide binding;0.000193419436179493!GO:0008092;cytoskeletal protein binding;0.000211346893571198!GO:0006302;double-strand break repair;0.000212939464738507!GO:0006695;cholesterol biosynthetic process;0.000223621413755854!GO:0007052;mitotic spindle organization and biogenesis;0.000232520346060716!GO:0005791;rough endoplasmic reticulum;0.000235157074940717!GO:0045454;cell redox homeostasis;0.000250103455313808!GO:0016363;nuclear matrix;0.000254071598913055!GO:0030029;actin filament-based process;0.000261655384396562!GO:0016481;negative regulation of transcription;0.000272888101877907!GO:0006402;mRNA catabolic process;0.00028772337140173!GO:0016564;transcription repressor activity;0.000306010497002407!GO:0004298;threonine endopeptidase activity;0.000322989853399043!GO:0006950;response to stress;0.000330387261136438!GO:0000323;lytic vacuole;0.000342901385004504!GO:0005764;lysosome;0.000342901385004504!GO:0065007;biological regulation;0.00035341644528691!GO:0030663;COPI coated vesicle membrane;0.000364326260182571!GO:0030126;COPI vesicle coat;0.000364326260182571!GO:0005885;Arp2/3 protein complex;0.000366336612730866!GO:0007088;regulation of mitosis;0.000377056297411586!GO:0042802;identical protein binding;0.000377866582961249!GO:0005874;microtubule;0.000395932363363394!GO:0007059;chromosome segregation;0.000439708498831198!GO:0003729;mRNA binding;0.000467381544843205!GO:0003714;transcription corepressor activity;0.000482457039811614!GO:0005741;mitochondrial outer membrane;0.000492940497651008!GO:0008047;enzyme activator activity;0.00049548897414031!GO:0046474;glycerophospholipid biosynthetic process;0.000514693629998508!GO:0031072;heat shock protein binding;0.000543073296989006!GO:0045045;secretory pathway;0.00054330011877784!GO:0008610;lipid biosynthetic process;0.000546001356135194!GO:0008186;RNA-dependent ATPase activity;0.00055257732948402!GO:0007243;protein kinase cascade;0.000573359025673153!GO:0008250;oligosaccharyl transferase complex;0.000574166917411126!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00059593135270064!GO:0016044;membrane organization and biogenesis;0.000628754696275609!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000635587938175137!GO:0033116;ER-Golgi intermediate compartment membrane;0.000639715436492118!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000648899758293746!GO:0006310;DNA recombination;0.000651508676503083!GO:0048471;perinuclear region of cytoplasm;0.00066526456134408!GO:0030134;ER to Golgi transport vesicle;0.000683154988116435!GO:0005096;GTPase activator activity;0.000705435670133719!GO:0005762;mitochondrial large ribosomal subunit;0.000739138907624236!GO:0000315;organellar large ribosomal subunit;0.000739138907624236!GO:0006383;transcription from RNA polymerase III promoter;0.000770380963756209!GO:0048522;positive regulation of cellular process;0.000821340107445439!GO:0030521;androgen receptor signaling pathway;0.000856236785187488!GO:0007093;mitotic cell cycle checkpoint;0.000858984733805213!GO:0004576;oligosaccharyl transferase activity;0.000893175356039217!GO:0006891;intra-Golgi vesicle-mediated transport;0.000920319867865978!GO:0030027;lamellipodium;0.000956695565466184!GO:0048500;signal recognition particle;0.000999708955356341!GO:0046467;membrane lipid biosynthetic process;0.00100366928073114!GO:0030137;COPI-coated vesicle;0.00101222060113018!GO:0030127;COPII vesicle coat;0.00101363496903147!GO:0012507;ER to Golgi transport vesicle membrane;0.00101363496903147!GO:0031901;early endosome membrane;0.00105522540502123!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0010893743074536!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00111145724242!GO:0019843;rRNA binding;0.00114768899659983!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00127886457180756!GO:0044452;nucleolar part;0.00129277831019428!GO:0000082;G1/S transition of mitotic cell cycle;0.00131512237295907!GO:0003678;DNA helicase activity;0.00135227235356734!GO:0009165;nucleotide biosynthetic process;0.0013696337961675!GO:0065009;regulation of a molecular function;0.0013696337961675!GO:0008361;regulation of cell size;0.00141397552730641!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00142960432652795!GO:0050662;coenzyme binding;0.00146505945282838!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0014834992102137!GO:0001726;ruffle;0.00149358937907737!GO:0004004;ATP-dependent RNA helicase activity;0.00149728664374792!GO:0035258;steroid hormone receptor binding;0.00151160451897198!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00166658170985955!GO:0006401;RNA catabolic process;0.00168810931178293!GO:0043488;regulation of mRNA stability;0.00180975685230759!GO:0043487;regulation of RNA stability;0.00180975685230759!GO:0030880;RNA polymerase complex;0.00184114348515688!GO:0031323;regulation of cellular metabolic process;0.00186218210094018!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00188802743576989!GO:0045047;protein targeting to ER;0.00188802743576989!GO:0030658;transport vesicle membrane;0.00193731033956784!GO:0016049;cell growth;0.00193731033956784!GO:0008312;7S RNA binding;0.00193767152299401!GO:0030132;clathrin coat of coated pit;0.00202867734657938!GO:0003684;damaged DNA binding;0.00202867734657938!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00212906009144265!GO:0000314;organellar small ribosomal subunit;0.00213621754889578!GO:0005763;mitochondrial small ribosomal subunit;0.00213621754889578!GO:0032984;macromolecular complex disassembly;0.00221489538572701!GO:0046489;phosphoinositide biosynthetic process;0.00225301826979505!GO:0004674;protein serine/threonine kinase activity;0.0022635858574946!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00227799259928092!GO:0018196;peptidyl-asparagine modification;0.00227799259928092!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00227799259928092!GO:0051920;peroxiredoxin activity;0.00269139679476879!GO:0003711;transcription elongation regulator activity;0.00285297375120771!GO:0006352;transcription initiation;0.00299187783097934!GO:0008180;signalosome;0.0030437056866995!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00306087205627349!GO:0000910;cytokinesis;0.00331021738721911!GO:0015992;proton transport;0.00331579839026586!GO:0045893;positive regulation of transcription, DNA-dependent;0.00337772895098452!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00337772895098452!GO:0000428;DNA-directed RNA polymerase complex;0.00337772895098452!GO:0016251;general RNA polymerase II transcription factor activity;0.00345523686336837!GO:0007050;cell cycle arrest;0.00354370781850749!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00355156849373584!GO:0008168;methyltransferase activity;0.00355752218531778!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00365749612129367!GO:0015399;primary active transmembrane transporter activity;0.00365749612129367!GO:0016741;transferase activity, transferring one-carbon groups;0.00369481348714997!GO:0005876;spindle microtubule;0.00380782014939688!GO:0006818;hydrogen transport;0.0038424467112639!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00386121427965919!GO:0030118;clathrin coat;0.00389719161836162!GO:0051128;regulation of cellular component organization and biogenesis;0.00397625290785443!GO:0017166;vinculin binding;0.00400609797204604!GO:0015631;tubulin binding;0.00403115770794858!GO:0007017;microtubule-based process;0.00414843151052141!GO:0006289;nucleotide-excision repair;0.00418554307075621!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00425491662846488!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00425491662846488!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00425491662846488!GO:0050681;androgen receptor binding;0.00432179934226423!GO:0043681;protein import into mitochondrion;0.00434259741157732!GO:0043241;protein complex disassembly;0.00478376305922444!GO:0005100;Rho GTPase activator activity;0.00485226167845164!GO:0006275;regulation of DNA replication;0.00493916008213198!GO:0008139;nuclear localization sequence binding;0.00507984224336194!GO:0004527;exonuclease activity;0.0051211853181629!GO:0000922;spindle pole;0.00512531797097755!GO:0045941;positive regulation of transcription;0.00516835223161057!GO:0006414;translational elongation;0.00533297406187131!GO:0030660;Golgi-associated vesicle membrane;0.00533297406187131!GO:0001558;regulation of cell growth;0.0055906213859049!GO:0006350;transcription;0.0055906213859049!GO:0033673;negative regulation of kinase activity;0.00561090109627777!GO:0006469;negative regulation of protein kinase activity;0.00561090109627777!GO:0006405;RNA export from nucleus;0.00614710485701449!GO:0004177;aminopeptidase activity;0.00615357775441149!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00625893816791886!GO:0006650;glycerophospholipid metabolic process;0.00644568790478582!GO:0000049;tRNA binding;0.00647239012107222!GO:0051287;NAD binding;0.0065260286365815!GO:0016197;endosome transport;0.00662028624351386!GO:0006839;mitochondrial transport;0.00672340821747048!GO:0043624;cellular protein complex disassembly;0.00681157994833658!GO:0048037;cofactor binding;0.00706780579139574!GO:0032508;DNA duplex unwinding;0.00712394617311671!GO:0032392;DNA geometric change;0.00712394617311671!GO:0031124;mRNA 3'-end processing;0.00721685215651045!GO:0006626;protein targeting to mitochondrion;0.0074551366119506!GO:0006595;polyamine metabolic process;0.00755938064872173!GO:0030518;steroid hormone receptor signaling pathway;0.00760866867361072!GO:0006611;protein export from nucleus;0.00767786562744456!GO:0000339;RNA cap binding;0.0076887566221363!GO:0051348;negative regulation of transferase activity;0.00772904245165728!GO:0008234;cysteine-type peptidase activity;0.00792538187069526!GO:0000786;nucleosome;0.00835684925086384!GO:0006607;NLS-bearing substrate import into nucleus;0.00841840870904482!GO:0009967;positive regulation of signal transduction;0.00855626280130255!GO:0046483;heterocycle metabolic process;0.0086321364972632!GO:0019752;carboxylic acid metabolic process;0.00884914461125684!GO:0006497;protein amino acid lipidation;0.00884914461125684!GO:0006892;post-Golgi vesicle-mediated transport;0.00893548199083666!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00897937344217439!GO:0047485;protein N-terminus binding;0.00908371039286574!GO:0007006;mitochondrial membrane organization and biogenesis;0.00913348035262574!GO:0051540;metal cluster binding;0.00923007424244401!GO:0051536;iron-sulfur cluster binding;0.00923007424244401!GO:0043284;biopolymer biosynthetic process;0.00932056741834508!GO:0008033;tRNA processing;0.0097895424714834!GO:0030119;AP-type membrane coat adaptor complex;0.00989672866493861!GO:0006082;organic acid metabolic process;0.0100960790792104!GO:0005669;transcription factor TFIID complex;0.0101327974164428!GO:0008154;actin polymerization and/or depolymerization;0.0101937188324209!GO:0005869;dynactin complex;0.0102572870669778!GO:0031625;ubiquitin protein ligase binding;0.0103524027723393!GO:0048487;beta-tubulin binding;0.0103808694403037!GO:0050790;regulation of catalytic activity;0.0105157260929257!GO:0006268;DNA unwinding during replication;0.0106579035367591!GO:0005637;nuclear inner membrane;0.0108524050915647!GO:0045892;negative regulation of transcription, DNA-dependent;0.0110700320121627!GO:0022415;viral reproductive process;0.0113496528509829!GO:0008022;protein C-terminus binding;0.0113496528509829!GO:0000209;protein polyubiquitination;0.011484014433491!GO:0030659;cytoplasmic vesicle membrane;0.0118354883886315!GO:0005832;chaperonin-containing T-complex;0.0119952045661741!GO:0005684;U2-dependent spliceosome;0.0125666045834759!GO:0016584;nucleosome positioning;0.0129085688585352!GO:0043492;ATPase activity, coupled to movement of substances;0.0129414467321628!GO:0030176;integral to endoplasmic reticulum membrane;0.0136453261371365!GO:0016408;C-acyltransferase activity;0.0139344762845439!GO:0030041;actin filament polymerization;0.0140060999998066!GO:0022890;inorganic cation transmembrane transporter activity;0.0142338259975125!GO:0005862;muscle thin filament tropomyosin;0.0142338259975125!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0142471679823531!GO:0051087;chaperone binding;0.0149910327872938!GO:0007264;small GTPase mediated signal transduction;0.0150680831353072!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0152394540590813!GO:0022411;cellular component disassembly;0.0152394540590813!GO:0010468;regulation of gene expression;0.0152862699983475!GO:0030131;clathrin adaptor complex;0.0163307664933825!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0163307664933825!GO:0032200;telomere organization and biogenesis;0.0163897266517652!GO:0000723;telomere maintenance;0.0163897266517652!GO:0007034;vacuolar transport;0.0166079554794252!GO:0030384;phosphoinositide metabolic process;0.0166373562289063!GO:0044433;cytoplasmic vesicle part;0.0168618251471782!GO:0009112;nucleobase metabolic process;0.0169172204817108!GO:0033559;unsaturated fatty acid metabolic process;0.016931437417143!GO:0006636;unsaturated fatty acid biosynthetic process;0.016931437417143!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.016997084918403!GO:0031529;ruffle organization and biogenesis;0.016997084918403!GO:0006897;endocytosis;0.0171451368335917!GO:0010324;membrane invagination;0.0171451368335917!GO:0003746;translation elongation factor activity;0.0172371426509982!GO:0022406;membrane docking;0.0173783783655264!GO:0048278;vesicle docking;0.0173783783655264!GO:0006354;RNA elongation;0.0174832808446858!GO:0051539;4 iron, 4 sulfur cluster binding;0.0176628143605654!GO:0031570;DNA integrity checkpoint;0.0178941963252603!GO:0004003;ATP-dependent DNA helicase activity;0.0179365766920183!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0179365766920183!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0179365766920183!GO:0006979;response to oxidative stress;0.0179632770644842!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0182993705319933!GO:0019783;small conjugating protein-specific protease activity;0.0184712934216031!GO:0006984;ER-nuclear signaling pathway;0.0186066565974946!GO:0043022;ribosome binding;0.0186146921277641!GO:0012506;vesicle membrane;0.0186741067890124!GO:0006144;purine base metabolic process;0.0190262725357829!GO:0031123;RNA 3'-end processing;0.0190319475808653!GO:0006376;mRNA splice site selection;0.0190319475808653!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0190319475808653!GO:0004843;ubiquitin-specific protease activity;0.0191299920585467!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.019205327803047!GO:0042158;lipoprotein biosynthetic process;0.0193139040033142!GO:0032940;secretion by cell;0.0194933746852837!GO:0022408;negative regulation of cell-cell adhesion;0.0195925652115878!GO:0001952;regulation of cell-matrix adhesion;0.0195990855537837!GO:0005099;Ras GTPase activator activity;0.0201421716325718!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0201781214537534!GO:0016125;sterol metabolic process;0.0201793177736978!GO:0043130;ubiquitin binding;0.0206690259161902!GO:0032182;small conjugating protein binding;0.0206690259161902!GO:0008632;apoptotic program;0.0212192742790204!GO:0042393;histone binding;0.0214380323524882!GO:0000152;nuclear ubiquitin ligase complex;0.0219798502132892!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0219868955157103!GO:0006338;chromatin remodeling;0.0224250051878961!GO:0003779;actin binding;0.0228708443874443!GO:0005801;cis-Golgi network;0.0231325574123632!GO:0030032;lamellipodium biogenesis;0.0235657293780034!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0237513352032152!GO:0033043;regulation of organelle organization and biogenesis;0.0237513352032152!GO:0000781;chromosome, telomeric region;0.0237513352032152!GO:0016407;acetyltransferase activity;0.0238738716635872!GO:0042770;DNA damage response, signal transduction;0.0240361330930929!GO:0004221;ubiquitin thiolesterase activity;0.0244546452861672!GO:0008286;insulin receptor signaling pathway;0.0245815889231782!GO:0048518;positive regulation of biological process;0.0248562089652147!GO:0035035;histone acetyltransferase binding;0.024907349932781!GO:0005875;microtubule associated complex;0.0251267800795702!GO:0030125;clathrin vesicle coat;0.0257169014944189!GO:0030665;clathrin coated vesicle membrane;0.0257169014944189!GO:0007030;Golgi organization and biogenesis;0.0257715857203888!GO:0042026;protein refolding;0.0258232802446878!GO:0044262;cellular carbohydrate metabolic process;0.0272408896848779!GO:0006378;mRNA polyadenylation;0.0275523587480367!GO:0030522;intracellular receptor-mediated signaling pathway;0.0276867863978947!GO:0048144;fibroblast proliferation;0.0282663675245225!GO:0048145;regulation of fibroblast proliferation;0.0282663675245225!GO:0016790;thiolester hydrolase activity;0.0287352710033546!GO:0000819;sister chromatid segregation;0.0293549154384437!GO:0006904;vesicle docking during exocytosis;0.0293871292151269!GO:0006506;GPI anchor biosynthetic process;0.029861777213659!GO:0019206;nucleoside kinase activity;0.029861777213659!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0314581429902064!GO:0048146;positive regulation of fibroblast proliferation;0.0314581429902064!GO:0000077;DNA damage checkpoint;0.0325772016439466!GO:0006778;porphyrin metabolic process;0.0327810740948192!GO:0033013;tetrapyrrole metabolic process;0.0327810740948192!GO:0008299;isoprenoid biosynthetic process;0.033202953401788!GO:0000792;heterochromatin;0.0339789206243876!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0340051185607738!GO:0031577;spindle checkpoint;0.034416263221995!GO:0004722;protein serine/threonine phosphatase activity;0.0344175890723484!GO:0031371;ubiquitin conjugating enzyme complex;0.0344882857389401!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0345876433812021!GO:0031902;late endosome membrane;0.0362206422775759!GO:0006509;membrane protein ectodomain proteolysis;0.0363031304763529!GO:0033619;membrane protein proteolysis;0.0363031304763529!GO:0000725;recombinational repair;0.0363818017373728!GO:0000724;double-strand break repair via homologous recombination;0.0363818017373728!GO:0006284;base-excision repair;0.0368825468775224!GO:0005856;cytoskeleton;0.0372035993727424!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0373075611771536!GO:0015002;heme-copper terminal oxidase activity;0.0373075611771536!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0373075611771536!GO:0004129;cytochrome-c oxidase activity;0.0373075611771536!GO:0006505;GPI anchor metabolic process;0.0373894242383927!GO:0043596;nuclear replication fork;0.0375679086780686!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0381045740823464!GO:0045334;clathrin-coated endocytic vesicle;0.0381796174605765!GO:0000070;mitotic sister chromatid segregation;0.0382158388217301!GO:0007021;tubulin folding;0.039074024112065!GO:0051053;negative regulation of DNA metabolic process;0.039096524219403!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0393133648789757!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0393133648789757!GO:0005774;vacuolar membrane;0.0394648797874689!GO:0009225;nucleotide-sugar metabolic process;0.0402793580971606!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0406078422828766!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0406078422828766!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0412983478528912!GO:0007004;telomere maintenance via telomerase;0.041425180110372!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0418067104055526!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.0418531402702427!GO:0009451;RNA modification;0.0418858738806328!GO:0000726;non-recombinational repair;0.0419777690195823!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0419811121939952!GO:0031461;cullin-RING ubiquitin ligase complex;0.0422924467565434!GO:0001953;negative regulation of cell-matrix adhesion;0.0425031169153946!GO:0008097;5S rRNA binding;0.0426236211725833!GO:0030695;GTPase regulator activity;0.043246493345184!GO:0006779;porphyrin biosynthetic process;0.0433383711310984!GO:0033014;tetrapyrrole biosynthetic process;0.0433383711310984!GO:0005784;translocon complex;0.0438840666085493!GO:0030433;ER-associated protein catabolic process;0.0439893696346461!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0439893696346461!GO:0043407;negative regulation of MAP kinase activity;0.0445740849089533!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0446782380964432!GO:0006520;amino acid metabolic process;0.0448556870985207!GO:0000096;sulfur amino acid metabolic process;0.0449203619402324!GO:0046966;thyroid hormone receptor binding;0.0453051109857011!GO:0006596;polyamine biosynthetic process;0.0453089801546887!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0454679433375794!GO:0016581;NuRD complex;0.045483994920041!GO:0006541;glutamine metabolic process;0.0458209194527202!GO:0032259;methylation;0.046318661751418!GO:0030508;thiol-disulfide exchange intermediate activity;0.0465258829263062!GO:0043414;biopolymer methylation;0.0465372878385562!GO:0030833;regulation of actin filament polymerization;0.0467442961712735!GO:0003756;protein disulfide isomerase activity;0.0469003512756594!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0469003512756594!GO:0009116;nucleoside metabolic process;0.0470023594031319!GO:0042585;germinal vesicle;0.0470023594031319!GO:0007569;cell aging;0.0470023594031319!GO:0007041;lysosomal transport;0.0473897096859777!GO:0042670;retinal cone cell differentiation;0.0478256275281748!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0478256275281748!GO:0046549;retinal cone cell development;0.0478256275281748!GO:0004518;nuclease activity;0.0480638734661435!GO:0043087;regulation of GTPase activity;0.0487195085954993!GO:0030911;TPR domain binding;0.0490634321226635!GO:0005811;lipid particle;0.049437433129908!GO:0006007;glucose catabolic process;0.0498261523106669
|sample_id=11395
|sample_note=
|sample_sex=unknown
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=periodontal ligament
|top_motifs=PDX1:2.04858239889;ZNF238:1.59108139655;NFIX:1.23486110522;TFDP1:1.12781139101;NR3C1:1.10619275809;PAX8:1.04205510728;FOX{I1,J2}:1.03947186154;GFI1:1.00301332427;FOXA2:0.999241934949;GZF1:0.966321409211;TFAP4:0.936068972453;NKX2-2,8:0.911117583578;MYB:0.891733650835;NFATC1..3:0.877050668545;EN1,2:0.863002198916;SOX17:0.754954005216;LEF1_TCF7_TCF7L1,2:0.746434345393;ALX4:0.743581363121;ADNP_IRX_SIX_ZHX:0.693792145038;TGIF1:0.685080351894;PAX3,7:0.683285956529;AHR_ARNT_ARNT2:0.6647567672;TEAD1:0.654316186178;bHLH_family:0.640184922262;E2F1..5:0.602580562067;HBP1_HMGB_SSRP1_UBTF:0.591946731127;MZF1:0.591246107504;NFY{A,B,C}:0.578847593518;PRRX1,2:0.558625410064;TBX4,5:0.556232370594;STAT1,3:0.53702658628;BACH2:0.527698494462;HAND1,2:0.523144919775;HOXA9_MEIS1:0.499836127314;TLX1..3_NFIC{dimer}:0.498844618081;HSF1,2:0.484956889415;NRF1:0.462551294865;GFI1B:0.449443725329;SPZ1:0.42591941325;MYBL2:0.417525949297;ZNF143:0.408479831954;HES1:0.401028215437;NKX3-1:0.397773507421;GTF2I:0.393858679872;PAX5:0.392055294709;TEF:0.370519869507;NFE2L2:0.367368874709;FOS_FOS{B,L1}_JUN{B,D}:0.343297925137;TFCP2:0.341766277972;ELK1,4_GABP{A,B1}:0.341120808284;NFE2:0.334252170673;TFAP2{A,C}:0.323715024397;YY1:0.322955332962;TP53:0.321951494171;HOX{A5,B5}:0.301335418883;CRX:0.299704554389;NANOG:0.284756744617;MAZ:0.267751734951;STAT5{A,B}:0.256220855192;SP1:0.252778751427;ZFP161:0.237323229766;LHX3,4:0.235444183297;CEBPA,B_DDIT3:0.226943931541;ELF1,2,4:0.22367713604;MTF1:0.215489820041;FOXN1:0.208944865477;AR:0.190532308096;HOX{A6,A7,B6,B7}:0.190336946438;POU3F1..4:0.183180847429;FOSL2:0.181770511927;ALX1:0.178716342685;POU1F1:0.165047643609;SRF:0.158074495706;GTF2A1,2:0.155324403603;NHLH1,2:0.153713245959;MTE{core}:0.148239307707;HLF:0.146568938608;MAFB:0.144222773328;RBPJ:0.142700478387;NKX3-2:0.142182525233;HMGA1,2:0.135045863368;ZBTB6:0.125924570023;NKX6-1,2:0.100632854361;HIC1:0.0874212380357;EBF1:0.0711246320525;PRDM1:0.0696820784985;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0614192431465;NKX2-1,4:0.0425578592785;SOX5:0.0389400978757;FOXO1,3,4:0.0321466125087;HNF4A_NR2F1,2:0.0166412789926;CREB1:0.0101687342355;PATZ1:-0.0011583120952;FOXQ1:-0.00774829105519;NR1H4:-0.0186684394558;HNF1A:-0.0212993474117;HOX{A4,D4}:-0.031010419034;GATA6:-0.0335036682524;ZIC1..3:-0.0383974587787;ONECUT1,2:-0.0433863789065;MED-1{core}:-0.0438401737122;SREBF1,2:-0.0452598283353;XCPE1{core}:-0.0456954113352;EGR1..3:-0.0546946660246;NFIL3:-0.0607860473733;MYFfamily:-0.0759577337798;DMAP1_NCOR{1,2}_SMARC:-0.0793585890393;FOX{F1,F2,J1}:-0.0864326080191;TFAP2B:-0.0938646331708;MYOD1:-0.0959605180774;NKX2-3_NKX2-5:-0.106785932258;GATA4:-0.117524356898;IRF7:-0.120226815847;ZNF148:-0.120784295899;ESRRA:-0.125331961702;JUN:-0.12944190725;KLF4:-0.140349178372;RFX2..5_RFXANK_RFXAP:-0.146321257477;IRF1,2:-0.14671046648;XBP1:-0.151435196216;RFX1:-0.156072088281;ETS1,2:-0.170209384271;PAX6:-0.173386817806;RUNX1..3:-0.175469550958;ZNF423:-0.181851039377;NANOG{mouse}:-0.20025209137;MEF2{A,B,C,D}:-0.221623129519;ARID5B:-0.224963854765;NFE2L1:-0.247873175459;ATF5_CREB3:-0.251278684961;TAL1_TCF{3,4,12}:-0.262825168535;CDC5L:-0.263387327157;SPIB:-0.268974876433;RXR{A,B,G}:-0.280373195838;IKZF1:-0.283611636769;GCM1,2:-0.292266841896;TBP:-0.301771744387;POU5F1:-0.304246315634;BREu{core}:-0.313560177649;AIRE:-0.323937335031;T:-0.339719407669;SPI1:-0.346984496244;STAT2,4,6:-0.362551024967;POU6F1:-0.364665354147;FOX{D1,D2}:-0.372817774566;NFKB1_REL_RELA:-0.375648510775;FOXD3:-0.376243361098;ESR1:-0.393560969605;CUX2:-0.400547472525;ATF4:-0.420436067058;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.446057922215;OCT4_SOX2{dimer}:-0.452940216983;PAX2:-0.459879981899;ATF6:-0.466924682616;RREB1:-0.477043763378;PBX1:-0.503253414852;EVI1:-0.51288658755;PAX4:-0.521428309612;REST:-0.527894598282;FOXL1:-0.534437719045;PPARG:-0.534654819732;HIF1A:-0.536577152858;UFEwm:-0.537856446677;ATF2:-0.560451962968;BPTF:-0.570727171055;SOX{8,9,10}:-0.57319538893;TOPORS:-0.58756971929;POU2F1..3:-0.618821339052;SOX2:-0.641440752594;DBP:-0.647211733926;SMAD1..7,9:-0.648497882277;SNAI1..3:-0.651651013803;GLI1..3:-0.682526177938;CDX1,2,4:-0.704273516302;EP300:-0.706995393067;HMX1:-0.716703919881;TLX2:-0.728617850047;ZBTB16:-0.74573861199;ZNF384:-0.764878988178;RORA:-0.810179749275;PAX1,9:-0.816849700733;FOXM1:-0.818580691252;NR5A1,2:-0.840788463307;VSX1,2:-0.86473879184;FOXP3:-0.907160216055;ZEB1:-0.942064177988;RXRA_VDR{dimer}:-0.949248635069;FOXP1:-1.10763465053;PITX1..3:-1.14207976879;LMO2:-1.15188819846;IKZF2:-1.4789611644;NR6A1:-1.52950082534
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11395-118C9;search_select_hide=table117:FF:11395-118C9
}}
}}

Latest revision as of 17:57, 4 June 2020

Name:Fibroblast - Periodontal Ligament, donor3
Species:Human (Homo sapiens)
Library ID:CNhs11907
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueperiodontal ligament
dev stagefetus
sexunknown
agefetal
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number437
catalog numberSC2635
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005345
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11907 CAGE DRX008276 DRR009148
Accession ID Hg19

Library idBAMCTSS
CNhs11907 DRZ000573 DRZ001958
Accession ID Hg38

Library idBAMCTSS
CNhs11907 DRZ011923 DRZ013308
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005345
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.GTTTCG sRNA-Seq DRX037029 DRR041395
Accession ID Hg19

Library idBAMCTSS
SRhi10003.GTTTCG DRZ007037


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.177
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.458
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.106
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.00355
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.432
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.106
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.189
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.235
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.138
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0367
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.251
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.106
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.055
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.106
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11907

Jaspar motifP-value
MA0002.20.855
MA0003.10.693
MA0004.10.688
MA0006.10.879
MA0007.10.555
MA0009.10.357
MA0014.10.0941
MA0017.10.464
MA0018.20.047
MA0019.10.695
MA0024.10.00678
MA0025.10.227
MA0027.10.477
MA0028.10.0342
MA0029.10.108
MA0030.10.198
MA0031.10.153
MA0035.20.212
MA0038.10.00225
MA0039.20.0407
MA0040.10.171
MA0041.10.332
MA0042.10.292
MA0043.10.0537
MA0046.10.312
MA0047.20.0298
MA0048.10.676
MA0050.10.239
MA0051.10.995
MA0052.10.892
MA0055.10.436
MA0057.10.809
MA0058.10.603
MA0059.10.323
MA0060.16.42919e-6
MA0061.10.00461
MA0062.20.174
MA0065.20.0138
MA0066.10.245
MA0067.10.288
MA0068.10.253
MA0069.10.584
MA0070.10.726
MA0071.10.189
MA0072.10.673
MA0073.10.722
MA0074.10.347
MA0076.10.0288
MA0077.10.181
MA0078.10.499
MA0079.20.585
MA0080.20.0361
MA0081.10.705
MA0083.10.113
MA0084.10.185
MA0087.10.402
MA0088.10.0921
MA0090.10.0186
MA0091.10.996
MA0092.10.976
MA0093.10.718
MA0099.22.46697e-11
MA0100.10.0296
MA0101.10.301
MA0102.20.419
MA0103.12.24755e-5
MA0104.20.696
MA0105.16.26572e-5
MA0106.10.632
MA0107.10.0736
MA0108.20.622
MA0111.10.259
MA0112.20.0231
MA0113.10.41
MA0114.10.365
MA0115.10.326
MA0116.10.00213
MA0117.10.673
MA0119.10.815
MA0122.10.662
MA0124.10.0811
MA0125.10.738
MA0131.10.577
MA0135.10.242
MA0136.10.873
MA0137.20.0365
MA0138.20.194
MA0139.10.506
MA0140.10.383
MA0141.10.165
MA0142.10.497
MA0143.10.269
MA0144.10.228
MA0145.10.841
MA0146.10.419
MA0147.10.717
MA0148.10.146
MA0149.10.768
MA0150.10.114
MA0152.10.453
MA0153.10.837
MA0154.10.0318
MA0155.10.127
MA0156.10.528
MA0157.10.349
MA0159.10.00386
MA0160.10.492
MA0162.10.847
MA0163.18.40149e-4
MA0164.10.377
MA0258.10.0193
MA0259.10.716



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11907

Novel motifP-value
10.0706
100.6
1000.302
1010.677
1020.196
1030.685
1040.438
1050.763
1060.0217
1070.447
1080.304
1090.894
110.269
1100.531
1110.326
1120.119
1130.0103
1140.497
1150.311
1160.288
1170.436
1180.298
1190.0292
120.661
1200.683
1210.441
1220.938
1239.76366e-5
1240.748
1250.33
1260.495
1270.668
1280.295
1290.979
130.135
1300.01
1310.941
1320.28
1330.86
1340.0785
1350.296
1360.88
1370.893
1380.387
1391.14668e-4
140.267
1400.347
1410.598
1420.914
1430.769
1440.799
1450.958
1460.307
1470.136
1480.786
1490.629
150.606
1500.61
1510.18
1520.96
1530.66
1540.85
1550.0279
1560.888
1570.312
1580.0487
1590.23
160.505
1600.0687
1610.5
1620.324
1630.321
1640.143
1650.249
1660.617
1670.345
1680.838
1690.284
170.335
180.879
190.786
20.641
200.596
210.638
220.866
230.547
240.166
250.287
260.654
270.746
280.695
290.224
30.257
300.313
310.544
320.178
330.863
340.469
350.0249
360.1
370.38
380.651
390.523
40.339
400.0409
410.909
420.98
430.419
440.0167
450.795
460.173
470.111
480.315
490.307
50.585
500.406
510.859
520.714
530.321
540.873
550.309
560.583
570.949
580.116
590.363
60.847
600.0778
610.701
620.0576
630.539
640.129
650.145
660.0276
670.632
680.392
690.546
70.255
700.0109
710.291
720.891
730.72
740.158
750.16
760.643
770.668
780.379
790.325
80.229
800.579
810.196
820.00382
830.986
840.693
850.0155
860.381
870.256
880.854
890.377
90.637
900.599
910.686
920.716
930.942
940.402
950.479
960.58
970.2
980.367
990.0539



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11907


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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