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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000926,UBERON:0000080,UBERON:0000479,UBERON:0000058,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000025,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0005103,UBERON:0000083,UBERON:0002050,UBERON:0005423,UBERON:0002553,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0005291,UBERON:0004211,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0003104,UBERON:0005172,UBERON:0000464,UBERON:0009201,UBERON:0005256,UBERON:0003918,UBERON:0006598,UBERON:0003886,UBERON:0004819,UBERON:0005173,UBERON:0002532,UBERON:0006553,UBERON:0000074,UBERON:0001225,UBERON:0001285,UBERON:0001229,UBERON:0001008,UBERON:0003074,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916,UBERON:0003887,UBERON:0002120,UBERON:0009142,UBERON:0003081,UBERON:0003064,UBERON:0001230,UBERON:0004875,UBERON:0003220,UBERON:0005749,UBERON:0006603,UBERON:0004876,UBERON:0004199,UBERON:0004208,UBERON:0005095,UBERON:0005721,UBERON:0005754,UBERON:0003060,UBERON:0004209,UBERON:0004198,UBERON:0007687,UBERON:0007297
|DRA_sample_Accession=CAGE@SAMD00005025
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000115,CL:0000213,CL:0002078,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000666,CL:1000497,CL:0000222,CL:0002518,CL:0002681,CL:0002584,CL:1000612,CL:1000449,CL:0002188,CL:1000746
|accession_numbers=CAGE;DRX008432;DRR009304;DRZ000729;DRZ002114;DRZ012079;DRZ013464
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000153
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.01!131.71!SOX18;;chr21:39870339..39870443,-!p1@ERG!1.89!76.00!ERG;;chr18:53068911..53068935,-!p4@TCF4!1.53!36.71!TCF4;;chr8:10588010..10588030,-!p1@SOX7!1.49!29.80!SOX7;;chr2:114036488..114036504,-!p1@PAX8!1.45!26.99!PAX8;;chr12:96588368..96588394,+!p3@ELK3!1.42!66.50!ELK3;;chr16:86600426..86600441,+!p1@FOXC2!1.32!47.93!FOXC2;;chr8:55370487..55370503,+!p1@SOX17!1.32!19.86!SOX17;;chr7:27205136..27205164,-!p1@HOXA9!1.26!17.27!HOXA9;;chr7:27205106..27205134,-!p2@HOXA9!1.21!15.11!HOXA9;;chr5:71803177..71803255,-!p1@ZNF366!1.19!14.47!ZNF366;;chr12:66218598..66218645,+!p2@HMGA2!1.16!61.32!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.16!36.06!HMGA2;;chr17:6926362..6926377,+!p1@BCL6B!1.16!13.39!BCL6B;;chr5:72744594..72744609,-!p1@FOXD1!1.11!54.63!FOXD1;;chr17:46688334..46688385,-!p1@HOXB7!1.09!16.41!HOXB7;;chr11:61520075..61520136,+!p1@C11orf9!1.07!23.10!C11orf9;;chr12:66218212..66218244,+!p5@HMGA2!1.07!15.76!HMGA2;;chr2:177053386..177053402,+!p1@HOXD1!1.07!10.80!HOXD1;;chr2:176994408..176994492,+!p1@HOXD8!1.06!10.36!HOXD8;;chr7:27224842..27224872,-!p1@HOXA11!1.03!9.72!HOXA11;;chr2:5832508..5832524,+!p1@SOX11!1.02!9.50!SOX11;;chr17:36105042..36105060,-!p1@HNF1B!1.01!9.28!HNF1B;;chr10:94449703..94449718,+!p1@HHEX!0.99!34.76!HHEX;;chr17:46682321..46682362,-!p1@HOXB6!0.99!8.85!HOXB6;;chr9:124991204..124991246,-!p1@LHX6!0.98!8.64!LHX6;;chr7:27192185..27192209,-!p1@HOXA3!0.97!8.42!HOXA3;;chr12:66218836..66218888,+!p1@HMGA2!0.96!77.51!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!0.94!15.11!HMGA2;;chr7:27196217..27196246,-!p2@HOXA7!0.94!7.77!HOXA7;;chr6:34204921..34204939,+!p3@HMGA1!0.92!228.22!HMGA1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.92!7.77!GLIS1;;chr2:45236540..45236577,-!p1@SIX2!0.91!7.13!SIX2;;chr7:27153454..27153469,-!p2@HOXA3!0.87!6.48!HOXA3;;chr19:13213399..13213414,-!p6@LYL1!0.87!6.48!LYL1;;chrY:21906594..21906622,-!p1@KDM5D!0.86!6.26!KDM5D;;chr7:27224795..27224840,-!p2@HOXA11!0.86!6.26!HOXA11;;chr3:169381420..169381535,-!p1@MECOM!0.85!7.13!MECOM;;chr10:102505493..102505546,+!p2@PAX2!0.85!6.05!PAX2;;chr19:13213511..13213545,-!p2@LYL1!0.83!6.26!LYL1;;chr7:27213893..27213954,-!p1@HOXA10!0.83!5.83!HOXA10;;chr1:23885981..23886002,-!p1@ID3!0.82!1054.32!ID3;;chr20:42295745..42295765,+!p1@MYBL2!0.81!96.08!MYBL2;;chr18:22932080..22932170,-!p1@ZNF521!0.81!24.83!ZNF521;;chr5:72743793..72743855,-!p4@FOXD1!0.81!6.48!FOXD1;;chr9:16705069..16705086,-!p3@BNC2!0.81!5.40!BNC2;;chr17:46675558..46675577,-!p2@HOXB6!0.79!5.18!HOXB6;;chr17:46690839..46690884,-!p1@HOXB8!0.79!5.18!HOXB8;;chr13:72441315..72441454,-!p1@DACH1!0.78!10.58!DACH1;;chr16:86600458..86600461,+!p3@FOXC2!0.78!4.97!FOXC2;;chr3:128206762..128206781,-!p2@GATA2!0.77!33.68!GATA2;;chr17:46687959..46688007,-!p2@HOXB7!0.77!6.91!HOXB7;;chr15:96881221..96881240,+!p19@NR2F2!0.77!6.69!NR2F2;;chr1:214161272..214161322,+!p1@PROX1!0.76!6.91!PROX1;;chr19:46801639..46801699,+!p1@HIF3A!0.76!4.75!HIF3A;;chr17:46691732..46691766,-!p4@HOXB8!0.76!4.75!HOXB8;;chr20:50721803..50721857,-!p2@ZFP64!0.75!7.56!ZFP64;;chr20:50159198..50159299,-!p1@NFATC2!0.75!7.13!NFATC2;;chr12:66218573..66218596,+!p7@HMGA2!0.75!7.13!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!0.74!19.00!FOSL1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.74!4.53!HOXC5;;chr3:69811882..69811898,+!p6@MITF!0.74!4.53!MITF;;chr7:27170359..27170381,-!p1@HOXA4!0.74!4.53!HOXA4;;chr5:72744445..72744466,-!p2@FOXD1!0.73!7.77!FOXD1;;chr7:27183263..27183284,-!p2@HOXA5!0.73!4.32!HOXA5;;chr2:176969228..176969260,+!p1@HOXD11!0.73!4.32!HOXD11;;chr2:237077022..237077038,-!p1@GBX2!0.73!4.32!GBX2;;chr4:299227..299272,-!p1@ZNF732!0.73!4.32!ZNF732;;chr19:53496768..53496799,-!p1@ZNF702P!0.71!6.69!ZNF702P;;chr12:54393880..54393962,+!p1@HOXC9!0.71!4.10!HOXC9;;chr12:66358080..66358094,+!p15@HMGA2!0.71!4.10!HMGA2;;chr7:27196267..27196311,-!p1@HOXA7!0.71!4.10!HOXA7;;chr15:96873984..96873999,+!p3@NR2F2!0.70!33.47!NR2F2;;chr20:50179368..50179392,-!p2@NFATC2!0.69!5.18!NFATC2;;chr17:46675420..46675465,-!p3@HOXB6!0.69!4.53!HOXB6;;chr17:35294075..35294102,+!p1@ENST00000559335!0.69!3.89!LHX1;;chr2:176969097..176969109,+!p3@HOXD11!0.69!3.89!HOXD11;;chr20:42295713..42295738,+!p2@MYBL2!0.67!24.83!MYBL2;;chr14:61116183..61116208,-!p1@SIX1!0.67!15.76!SIX1;;chr9:132427972..132428056,+!p1@PRRX2!0.67!4.97!PRRX2;;chr18:53068982..53068993,-!p20@TCF4!0.67!3.67!TCF4;;chr2:237076992..237077008,-!p2@GBX2!0.67!3.67!GBX2;;chr3:69811858..69811881,+!p5@MITF!0.67!3.67!MITF;;chr1:200008734..200008765,+!p2@NR5A2!0.67!3.67!NR5A2;;chr15:37392576..37392589,-!p12@MEIS2!0.66!4.53!MEIS2;;chr15:37390850..37390909,-!p3@MEIS2!0.65!7.56!MEIS2;;chr19:13213662..13213686,-!p1@LYL1!0.65!5.40!LYL1;;chr16:86600870..86600921,+!p2@FOXC2!0.65!3.45!FOXC2;;chr7:27183291..27183324,-!p1@HOXA5!0.65!3.45!HOXA5;;chr8:77593474..77593612,+!p1@ZFHX4!0.64!16.19!ZFHX4;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.61!HMGA2;;chr2:46524537..46524553,+!p1@EPAS1!0.63!385.63!EPAS1;;chr5:176738887..176738934,-!p1@MXD3!0.63!25.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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002188;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009201
|ffid_belonging_in_development=CL:0000222
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Glomerular%2520Endothelial%2520Cells%252c%2520donor3.CNhs12624.11675-122H1.hg38.nobarcode.ctss.bed.gz
|id=FF:11675-122H1
|id=FF:11675-122H1
|is_a=EFO:0002091;;FF:0000153
|is_a=EFO:0002091;;FF:0000153
|is_obsolete=
|is_obsolete=
|library_id=CNhs12624
|library_id_phase_based=2:CNhs12624
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11675
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11675
|name=Renal Glomerular Endothelial Cells, donor3
|name=Renal Glomerular Endothelial Cells, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 43: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12624,LSID952,release012,COMPLETED
|profile_hcage=CNhs12624,LSID952,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|rna_catalog_number=SC4005
Line 58: Line 79:
|rna_weight_ug=10
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|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=
|sample_cell_catalog=
|sample_cell_line=
|sample_cell_line=
Line 79: Line 101:
|top_motifs=RXR{A,B,G}:1.56002504088;IKZF2:1.26576292319;NFATC1..3:1.20683352705;SOX{8,9,10}:1.19295221849;ADNP_IRX_SIX_ZHX:1.18781503119;PAX8:1.18239155809;ALX1:1.14239777262;FOXL1:1.12186771443;UFEwm:1.04549020011;TLX1..3_NFIC{dimer}:0.963327208107;GATA4:0.940468797469;SOX2:0.926850789324;XCPE1{core}:0.897417605474;CDC5L:0.886514857195;FOXD3:0.863969280598;HMGA1,2:0.811783908622;GFI1:0.806784215569;PAX1,9:0.785434075617;E2F1..5:0.774993568568;ZIC1..3:0.75262960961;AIRE:0.737129758811;GZF1:0.728388571304;TFDP1:0.723244148875;IKZF1:0.68382418911;POU1F1:0.664210641722;TEF:0.653490377647;PAX5:0.647021625489;ONECUT1,2:0.644815944404;ALX4:0.626356302441;SOX5:0.615313247278;SOX17:0.613947905223;SPZ1:0.593541814261;TFAP2{A,C}:0.588821709171;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.572515202201;TFAP4:0.567425148816;NKX3-1:0.562216079502;ZNF384:0.557894001518;POU6F1:0.55392921597;TP53:0.537993450911;T:0.532574767451;NR3C1:0.532450992723;TEAD1:0.529733055733;MTE{core}:0.488181344679;PAX6:0.472089377671;KLF4:0.466470787478;GCM1,2:0.419939821568;HOX{A5,B5}:0.390036123288;ZFP161:0.373684111138;HSF1,2:0.363986195809;NFY{A,B,C}:0.363484154613;ETS1,2:0.359661040627;ELF1,2,4:0.339273941791;HES1:0.335973153172;EN1,2:0.33111417089;STAT5{A,B}:0.312700042426;TBP:0.309046145222;FOX{I1,J2}:0.30404951904;ZNF148:0.301176019033;STAT2,4,6:0.290566532055;HBP1_HMGB_SSRP1_UBTF:0.277989327219;GFI1B:0.277702964699;MYB:0.273467883157;ZBTB16:0.257866353525;bHLH_family:0.252123671119;POU3F1..4:0.24423844369;MYBL2:0.231193786546;ARID5B:0.208820992689;RBPJ:0.206588228911;HIC1:0.197954009351;GTF2A1,2:0.188170569411;HNF1A:0.185784741262;EVI1:0.181664115451;AR:0.180993489807;PAX4:0.17971342364;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.16260033397;SRF:0.151921590468;NR5A1,2:0.148380886176;PPARG:0.135966462683;GATA6:0.126022854162;NR6A1:0.120246109603;SMAD1..7,9:0.112800249528;EBF1:0.108934781298;PRDM1:0.108106891682;ZBTB6:0.101862010516;SPIB:0.101408215153;LHX3,4:0.101333370405;HAND1,2:0.101116829414;SP1:0.0969816493793;POU2F1..3:0.0915246843476;BACH2:0.0714360948437;FOSL2:0.0667298010447;HNF4A_NR2F1,2:0.0605194027081;MZF1:0.0439436754559;POU5F1:0.0317175516567;TBX4,5:0.0294879695911;GTF2I:0.0250602762138;YY1:0.0166346963536;FOXA2:0.006695649174;MAZ:0.00106511774464;PBX1:0.000312018034659;MED-1{core}:-0.00620292932008;HOXA9_MEIS1:-0.00664467350415;FOXM1:-0.00946453316191;PATZ1:-0.0197379562797;NR1H4:-0.0202148588714;GLI1..3:-0.0206704670228;NFE2:-0.0411686374321;ZNF143:-0.0470205708922;PITX1..3:-0.0528806329876;SPI1:-0.0545894920372;NKX3-2:-0.0583750170798;TFAP2B:-0.0693938709584;LEF1_TCF7_TCF7L1,2:-0.0722761498754;EGR1..3:-0.0925967493295;DBP:-0.0984157415212;MTF1:-0.100044940747;NKX2-2,8:-0.114364885353;NFE2L1:-0.115459450869;BPTF:-0.120880004881;CDX1,2,4:-0.125626535703;NFE2L2:-0.131378112215;FOS_FOS{B,L1}_JUN{B,D}:-0.135505222097;PDX1:-0.138088452477;NRF1:-0.157527971737;FOXQ1:-0.159615754791;CUX2:-0.163768395731;HOX{A4,D4}:-0.174656108412;PAX3,7:-0.181942405927;IRF7:-0.191437650191;MYOD1:-0.193266769581;REST:-0.216233228702;IRF1,2:-0.218914616367;NHLH1,2:-0.284306416082;NFKB1_REL_RELA:-0.287118246728;NKX2-3_NKX2-5:-0.288795164227;OCT4_SOX2{dimer}:-0.296082836924;MEF2{A,B,C,D}:-0.299479041944;TOPORS:-0.344287392519;BREu{core}:-0.351378589229;DMAP1_NCOR{1,2}_SMARC:-0.356192722105;ZNF423:-0.36420058235;FOX{F1,F2,J1}:-0.371677400201;EP300:-0.388255629973;CRX:-0.394040673807;SNAI1..3:-0.394342085004;RORA:-0.401032578073;ATF2:-0.401998605837;NANOG{mouse}:-0.411863816068;XBP1:-0.415941131699;AHR_ARNT_ARNT2:-0.438142022046;ELK1,4_GABP{A,B1}:-0.441660119211;MYFfamily:-0.442374140482;TAL1_TCF{3,4,12}:-0.450989077547;TFCP2:-0.452408404115;ZNF238:-0.459337048396;PAX2:-0.480867717651;RUNX1..3:-0.49263159804;ATF6:-0.495279202327;FOX{D1,D2}:-0.497207005932;RREB1:-0.498853544836;FOXP3:-0.512687086599;ZEB1:-0.530495675336;RXRA_VDR{dimer}:-0.531464564038;RFX1:-0.543464034505;HLF:-0.567374042309;ESRRA:-0.592642210446;NANOG:-0.606310292427;VSX1,2:-0.612510904576;FOXN1:-0.666982009008;CEBPA,B_DDIT3:-0.670762679492;LMO2:-0.732296872172;CREB1:-0.746710684351;JUN:-0.748425121743;ATF4:-0.76092139462;PRRX1,2:-0.773675507827;NFIX:-0.789278849991;TGIF1:-0.790318340501;NKX2-1,4:-0.793656515596;NKX6-1,2:-0.811133255353;FOXP1:-0.81215603126;FOXO1,3,4:-0.821809109953;STAT1,3:-0.825333293962;MAFB:-0.838388339219;ATF5_CREB3:-0.856597362811;SREBF1,2:-0.863882207417;RFX2..5_RFXANK_RFXAP:-0.874405207387;NFIL3:-0.921631897494;ESR1:-0.983296776494;HMX1:-0.989102803262;HIF1A:-1.02046897576;TLX2:-1.11000791231;HOX{A6,A7,B6,B7}:-1.3829460623
|top_motifs=RXR{A,B,G}:1.56002504088;IKZF2:1.26576292319;NFATC1..3:1.20683352705;SOX{8,9,10}:1.19295221849;ADNP_IRX_SIX_ZHX:1.18781503119;PAX8:1.18239155809;ALX1:1.14239777262;FOXL1:1.12186771443;UFEwm:1.04549020011;TLX1..3_NFIC{dimer}:0.963327208107;GATA4:0.940468797469;SOX2:0.926850789324;XCPE1{core}:0.897417605474;CDC5L:0.886514857195;FOXD3:0.863969280598;HMGA1,2:0.811783908622;GFI1:0.806784215569;PAX1,9:0.785434075617;E2F1..5:0.774993568568;ZIC1..3:0.75262960961;AIRE:0.737129758811;GZF1:0.728388571304;TFDP1:0.723244148875;IKZF1:0.68382418911;POU1F1:0.664210641722;TEF:0.653490377647;PAX5:0.647021625489;ONECUT1,2:0.644815944404;ALX4:0.626356302441;SOX5:0.615313247278;SOX17:0.613947905223;SPZ1:0.593541814261;TFAP2{A,C}:0.588821709171;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.572515202201;TFAP4:0.567425148816;NKX3-1:0.562216079502;ZNF384:0.557894001518;POU6F1:0.55392921597;TP53:0.537993450911;T:0.532574767451;NR3C1:0.532450992723;TEAD1:0.529733055733;MTE{core}:0.488181344679;PAX6:0.472089377671;KLF4:0.466470787478;GCM1,2:0.419939821568;HOX{A5,B5}:0.390036123288;ZFP161:0.373684111138;HSF1,2:0.363986195809;NFY{A,B,C}:0.363484154613;ETS1,2:0.359661040627;ELF1,2,4:0.339273941791;HES1:0.335973153172;EN1,2:0.33111417089;STAT5{A,B}:0.312700042426;TBP:0.309046145222;FOX{I1,J2}:0.30404951904;ZNF148:0.301176019033;STAT2,4,6:0.290566532055;HBP1_HMGB_SSRP1_UBTF:0.277989327219;GFI1B:0.277702964699;MYB:0.273467883157;ZBTB16:0.257866353525;bHLH_family:0.252123671119;POU3F1..4:0.24423844369;MYBL2:0.231193786546;ARID5B:0.208820992689;RBPJ:0.206588228911;HIC1:0.197954009351;GTF2A1,2:0.188170569411;HNF1A:0.185784741262;EVI1:0.181664115451;AR:0.180993489807;PAX4:0.17971342364;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.16260033397;SRF:0.151921590468;NR5A1,2:0.148380886176;PPARG:0.135966462683;GATA6:0.126022854162;NR6A1:0.120246109603;SMAD1..7,9:0.112800249528;EBF1:0.108934781298;PRDM1:0.108106891682;ZBTB6:0.101862010516;SPIB:0.101408215153;LHX3,4:0.101333370405;HAND1,2:0.101116829414;SP1:0.0969816493793;POU2F1..3:0.0915246843476;BACH2:0.0714360948437;FOSL2:0.0667298010447;HNF4A_NR2F1,2:0.0605194027081;MZF1:0.0439436754559;POU5F1:0.0317175516567;TBX4,5:0.0294879695911;GTF2I:0.0250602762138;YY1:0.0166346963536;FOXA2:0.006695649174;MAZ:0.00106511774464;PBX1:0.000312018034659;MED-1{core}:-0.00620292932008;HOXA9_MEIS1:-0.00664467350415;FOXM1:-0.00946453316191;PATZ1:-0.0197379562797;NR1H4:-0.0202148588714;GLI1..3:-0.0206704670228;NFE2:-0.0411686374321;ZNF143:-0.0470205708922;PITX1..3:-0.0528806329876;SPI1:-0.0545894920372;NKX3-2:-0.0583750170798;TFAP2B:-0.0693938709584;LEF1_TCF7_TCF7L1,2:-0.0722761498754;EGR1..3:-0.0925967493295;DBP:-0.0984157415212;MTF1:-0.100044940747;NKX2-2,8:-0.114364885353;NFE2L1:-0.115459450869;BPTF:-0.120880004881;CDX1,2,4:-0.125626535703;NFE2L2:-0.131378112215;FOS_FOS{B,L1}_JUN{B,D}:-0.135505222097;PDX1:-0.138088452477;NRF1:-0.157527971737;FOXQ1:-0.159615754791;CUX2:-0.163768395731;HOX{A4,D4}:-0.174656108412;PAX3,7:-0.181942405927;IRF7:-0.191437650191;MYOD1:-0.193266769581;REST:-0.216233228702;IRF1,2:-0.218914616367;NHLH1,2:-0.284306416082;NFKB1_REL_RELA:-0.287118246728;NKX2-3_NKX2-5:-0.288795164227;OCT4_SOX2{dimer}:-0.296082836924;MEF2{A,B,C,D}:-0.299479041944;TOPORS:-0.344287392519;BREu{core}:-0.351378589229;DMAP1_NCOR{1,2}_SMARC:-0.356192722105;ZNF423:-0.36420058235;FOX{F1,F2,J1}:-0.371677400201;EP300:-0.388255629973;CRX:-0.394040673807;SNAI1..3:-0.394342085004;RORA:-0.401032578073;ATF2:-0.401998605837;NANOG{mouse}:-0.411863816068;XBP1:-0.415941131699;AHR_ARNT_ARNT2:-0.438142022046;ELK1,4_GABP{A,B1}:-0.441660119211;MYFfamily:-0.442374140482;TAL1_TCF{3,4,12}:-0.450989077547;TFCP2:-0.452408404115;ZNF238:-0.459337048396;PAX2:-0.480867717651;RUNX1..3:-0.49263159804;ATF6:-0.495279202327;FOX{D1,D2}:-0.497207005932;RREB1:-0.498853544836;FOXP3:-0.512687086599;ZEB1:-0.530495675336;RXRA_VDR{dimer}:-0.531464564038;RFX1:-0.543464034505;HLF:-0.567374042309;ESRRA:-0.592642210446;NANOG:-0.606310292427;VSX1,2:-0.612510904576;FOXN1:-0.666982009008;CEBPA,B_DDIT3:-0.670762679492;LMO2:-0.732296872172;CREB1:-0.746710684351;JUN:-0.748425121743;ATF4:-0.76092139462;PRRX1,2:-0.773675507827;NFIX:-0.789278849991;TGIF1:-0.790318340501;NKX2-1,4:-0.793656515596;NKX6-1,2:-0.811133255353;FOXP1:-0.81215603126;FOXO1,3,4:-0.821809109953;STAT1,3:-0.825333293962;MAFB:-0.838388339219;ATF5_CREB3:-0.856597362811;SREBF1,2:-0.863882207417;RFX2..5_RFXANK_RFXAP:-0.874405207387;NFIL3:-0.921631897494;ESR1:-0.983296776494;HMX1:-0.989102803262;HIF1A:-1.02046897576;TLX2:-1.11000791231;HOX{A6,A7,B6,B7}:-1.3829460623
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11675-122H1;search_select_hide=table117:FF:11675-122H1
}}
}}

Latest revision as of 18:14, 4 June 2020

Name:Renal Glomerular Endothelial Cells, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12624
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typeendothelial cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number5993
catalog numberSC4005
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005025
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12624 CAGE DRX008432 DRR009304
Accession ID Hg19

Library idBAMCTSS
CNhs12624 DRZ000729 DRZ002114
Accession ID Hg38

Library idBAMCTSS
CNhs12624 DRZ012079 DRZ013464
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.383
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.834
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.436
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0849
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0423
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.164
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0888
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0681
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0492
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.63
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.44
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.318
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.318
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature-0.0111
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0849
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.555
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0849
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.361
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12624

Jaspar motifP-value
MA0002.21.90509e-4
MA0003.10.741
MA0004.10.559
MA0006.10.0446
MA0007.10.393
MA0009.10.806
MA0014.10.829
MA0017.10.579
MA0018.23.80378e-5
MA0019.10.0618
MA0024.14.43733e-5
MA0025.10.127
MA0027.10.742
MA0028.10.0762
MA0029.10.953
MA0030.10.041
MA0031.10.0138
MA0035.20.969
MA0038.10.108
MA0039.20.558
MA0040.10.87
MA0041.10.313
MA0042.10.649
MA0043.16.68524e-8
MA0046.10.0069
MA0047.20.42
MA0048.10.28
MA0050.10.141
MA0051.10.797
MA0052.10.338
MA0055.10.404
MA0057.10.352
MA0058.10.225
MA0059.10.679
MA0060.10.0113
MA0061.10.0478
MA0062.26.1234e-4
MA0065.20.503
MA0066.10.98
MA0067.17.81451e-4
MA0068.10.587
MA0069.10.021
MA0070.10.714
MA0071.10.714
MA0072.10.349
MA0073.10.974
MA0074.10.603
MA0076.10.00136
MA0077.15.38846e-4
MA0078.10.0334
MA0079.20.198
MA0080.20.241
MA0081.10.866
MA0083.10.57
MA0084.10.247
MA0087.10.553
MA0088.10.151
MA0090.10.162
MA0091.10.5
MA0092.10.973
MA0093.10.525
MA0099.20.627
MA0100.10.591
MA0101.10.508
MA0102.28.41938e-6
MA0103.10.0111
MA0104.20.0406
MA0105.10.548
MA0106.10.013
MA0107.10.166
MA0108.20.12
MA0111.10.981
MA0112.20.175
MA0113.10.99
MA0114.10.181
MA0115.10.24
MA0116.10.457
MA0117.10.188
MA0119.10.45
MA0122.10.855
MA0124.10.823
MA0125.10.948
MA0131.10.327
MA0135.10.488
MA0136.10.116
MA0137.20.294
MA0138.20.849
MA0139.10.958
MA0140.10.881
MA0141.10.486
MA0142.10.963
MA0143.10.6
MA0144.10.679
MA0145.10.868
MA0146.10.0226
MA0147.10.232
MA0148.10.356
MA0149.10.162
MA0150.10.181
MA0152.10.461
MA0153.10.489
MA0154.10.22
MA0155.10.353
MA0156.10.842
MA0157.10.258
MA0159.10.383
MA0160.10.0769
MA0162.10.0632
MA0163.10.204
MA0164.10.97
MA0258.10.0346
MA0259.10.507



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12624

Novel motifP-value
10.37
100.239
1000.299
1010.164
1020.81
1030.518
1040.994
1050.0992
1060.381
1070.0336
1080.75
1090.587
110.829
1100.582
1110.436
1120.571
1130.342
1140.36
1150.521
1160.81
1170.0622
1180.715
1190.881
120.0506
1200.00892
1210.944
1220.361
1230.00184
1240.0561
1250.995
1260.998
1270.481
1280.874
1290.895
130.466
1300.454
1310.0734
1320.364
1330.792
1340.415
1350.974
1360.0451
1370.11
1380.977
1390.00975
140.29
1400.892
1410.707
1420.261
1430.487
1440.834
1450.603
1460.823
1470.0409
1480.498
1490.821
150.274
1500.0548
1510.244
1520.0125
1530.198
1540.861
1550.148
1560.428
1570.0421
1580.0641
1590.546
160.812
1600.138
1610.673
1620.246
1630.4
1640.442
1650.876
1660.544
1670.148
1680.182
1690.635
170.735
180.874
190.987
20.843
200.533
210.942
220.292
230.861
240.448
250.651
260.843
270.862
280.254
290.494
30.362
300.788
310.479
320.711
330.842
340.858
350.022
360.743
370.893
380.717
390.149
40.553
400.656
410.852
420.728
430.0831
440.0371
450.841
460.985
470.825
480.922
490.0216
50.556
500.927
510.869
520.368
530.0326
540.608
550.267
560.785
570.867
580.12
590.449
60.281
600.171
610.652
620.212
630.859
640.437
650.725
660.363
670.73
680.338
690.604
70.295
700.0203
710.236
720.735
730.0628
740.819
750.239
760.17
770.617
780.834
790.334
80.446
800.432
810.422
820.136
830.555
840.00651
850.185
860.396
870.646
880.38
890.916
90.89
900.103
910.597
920.504
930.428
940.623
950.996
960.581
970.591
980.184
990.00597



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12624


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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