FFCP PHASE1:Hg19::chr1:153005015..153005047,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6699 | |EntrezGene=6699 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11260 | |HGNC=11260 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=194bp_to_BC156326,BC157076_5end | |association_with_transcript=194bp_to_BC156326,BC157076_5end | ||
|cluster_id=chr1:153005015..153005047,+ | |||
|coexpression_cluster_id=C1778 | |||
|description=CAGE_peak_3_at_SPRR1B_5end | |description=CAGE_peak_3_at_SPRR1B_5end | ||
|id=chr1:153005015..153005047,+ | |id=chr1:153005015..153005047,+ | ||
|ontology_enrichment_celltype=CL:0002076!7.87e-29!43;CL:0000622!9.50e-21!5;CL:0002251!1.48e-20!21;CL:0000223!9.55e-20!59;CL:0000154!3.03e-17!6;CL:0002159!7.79e-15!13;CL:0002368!3.15e-14!13;CL:0002328!2.87e-13!3;CL:0002621!4.69e-13!3;CL:0002623!5.08e-13!3;CL:0000150!2.15e-11!9;CL:0000066!2.56e-10!254;CL:0000575!1.48e-09!2;CL:0000317!1.82e-09!2;CL:1000448!1.82e-09!2;CL:0002308!1.82e-09!2;CL:0002140!1.82e-09!2;CL:0000362!1.39e-08!8;CL:0002077!1.56e-08!33;CL:0002202!1.77e-07!9;CL:0002632!1.77e-07!9 | |ontology_enrichment_celltype=CL:0002076!7.87e-29!43;CL:0000622!9.50e-21!5;CL:0002251!1.48e-20!21;CL:0000223!9.55e-20!59;CL:0000154!3.03e-17!6;CL:0002159!7.79e-15!13;CL:0002368!3.15e-14!13;CL:0002328!2.87e-13!3;CL:0002621!4.69e-13!3;CL:0002623!5.08e-13!3;CL:0000150!2.15e-11!9;CL:0000066!2.56e-10!254;CL:0000575!1.48e-09!2;CL:0000317!1.82e-09!2;CL:1000448!1.82e-09!2;CL:0002308!1.82e-09!2;CL:0002140!1.82e-09!2;CL:0000362!1.39e-08!8;CL:0002077!1.56e-08!33;CL:0002202!1.77e-07!9;CL:0002632!1.77e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000622;6.48e-22;5!CL:0002328;1.49e-20;3!CL:0002621;1.49e-20;3!CL:0000154;2.66e-18;6!CL:0002159;6.87e-17;14!CL:0000575;9.09e-15;2!CL:0002076;1.50e-14;42!CL:0000317;1.86e-14;2!CL:1000448;1.86e-14;2!CL:0002308;1.86e-14;2!CL:0002140;1.86e-14;2!CL:0000150;2.91e-12;9!CL:0000362;3.95e-12;9!CL:0002251;1.38e-11;20!CL:0002623;4.48e-10;3!CL:0002077;1.12e-09;34!CL:0002368;2.61e-08;13!CL:0002252;5.04e-08;1!CL:0000244;6.99e-08;4!CL:0000731;6.99e-08;4!CL:0002202;3.43e-07;9!CL:0002632;3.43e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000622,5.22e-22,5;CL:0002328,8.16e-21,3;CL:0002621,1.83e-20,3;CL:0000154,2.22e-18,6;CL:0002076,2.91e-17,42;CL:0002159,6.23e-17,14;CL:0000575,1.04e-14,2;CL:0000317,1.47e-14,2;CL:1000448,1.47e-14,2;CL:0002308,1.47e-14,2;CL:0002140,1.47e-14,2;CL:0000150,2.59e-12,9;CL:0000362,3.37e-12,9;CL:0000223,5.84e-12,58;CL:0002251,1.53e-11,20;CL:0002077,1.80e-11,34;CL:0002623,4.38e-10,3;CL:0000066,1.61e-08,253;CL:0002368,2.21e-08,13;CL:0002252,6.19e-08,1;CL:0000244,6.87e-08,4;CL:0000731,6.87e-08,4;CL:0002202,2.82e-07,9;CL:0002632,2.82e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0009143;3.45e-08;1!UBERON:0000358;5.04e-08;1!CL:0000223;4.57e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3151;8.98e-08;1!DOID:3149;8.98e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.21e-07,1;DOID:3149,1.21e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000166!3.64e-25!21;UBERON:0000165!2.62e-21!28;UBERON:0000930!2.62e-21!28;UBERON:0001004!2.88e-19!72;UBERON:0000161!1.02e-16!35;UBERON:0001444!2.01e-15!48;UBERON:0003102!2.48e-15!95;UBERON:0004815!2.87e-13!3;UBERON:0002031!2.87e-13!3;UBERON:0001723!3.98e-13!3;UBERON:0001033!3.98e-13!3;UBERON:0010056!3.98e-13!3;UBERON:0001949!4.69e-13!3;UBERON:0003729!4.94e-12!5;UBERON:0004119!1.01e-11!169;UBERON:0000925!1.01e-11!169;UBERON:0006595!1.01e-11!169;UBERON:0000078!3.01e-10!18;UBERON:0002185!4.65e-10!4;UBERON:0000065!7.92e-10!53;UBERON:0001042!7.92e-10!10;UBERON:0009145!7.92e-10!10;UBERON:0002419!1.82e-09!2;UBERON:0007771!1.82e-09!2;UBERON:0003297!1.82e-09!2;UBERON:0001821!1.82e-09!2;UBERON:0003487!1.82e-09!2;UBERON:0001820!1.82e-09!2;UBERON:0005089!1.82e-09!2;UBERON:0005088!1.82e-09!2;UBERON:0000974!3.65e-09!10;UBERON:0003343!6.35e-09!4;UBERON:0004785!6.35e-09!4;UBERON:0006562!6.61e-09!11;UBERON:0001007!4.83e-08!155;UBERON:0001555!4.83e-08!155;UBERON:0007026!4.83e-08!155;UBERON:0000344!1.36e-07!12;UBERON:0001003!2.86e-07!14;UBERON:0007376!2.86e-07!14;UBERON:0007383!2.86e-07!14;UBERON:0007196!5.14e-07!14;UBERON:0001558!5.14e-07!14;UBERON:0004121!7.26e-07!169;UBERON:0000072!7.94e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.49e-20;3!UBERON:0002031;1.49e-20;3!UBERON:0001949;1.49e-20;3!UBERON:0002419;1.86e-14;2!UBERON:0007771;1.86e-14;2!UBERON:0003297;1.86e-14;2!UBERON:0001821;1.86e-14;2!UBERON:0003487;1.86e-14;2!UBERON:0001820;1.86e-14;2!UBERON:0000486;5.96e-14;12!UBERON:0002185;1.46e-12;5!UBERON:0010371;1.74e-12;31!UBERON:0000165;4.01e-11;28!UBERON:0001003;5.20e-11;15!UBERON:0007376;5.20e-11;15!UBERON:0001723;1.75e-10;3!UBERON:0001033;1.75e-10;3!UBERON:0004807;2.20e-10;22!UBERON:0001043;5.61e-10;3!UBERON:0005911;9.86e-10;36!UBERON:0000485;4.07e-09;7!UBERON:0003929;4.07e-09;7!UBERON:0000161;1.12e-08;19!UBERON:0000166;1.12e-08;19!UBERON:0005795;2.80e-08;1!UBERON:0003350;4.91e-08;8!UBERON:0001828;4.91e-08;8!UBERON:0007029;5.04e-08;1!UBERON:0001041;6.10e-08;14!UBERON:0000964;8.14e-08;4!UBERON:0010409;8.14e-08;4!UBERON:0000014;1.72e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,8.16e-21,3;UBERON:0002031,8.16e-21,3;UBERON:0001949,1.83e-20,3;UBERON:0002419,1.47e-14,2;UBERON:0007771,1.47e-14,2;UBERON:0003297,1.47e-14,2;UBERON:0001821,1.47e-14,2;UBERON:0003487,1.47e-14,2;UBERON:0001820,1.47e-14,2;UBERON:0005089,1.47e-14,2;UBERON:0005088,1.47e-14,2;UBERON:0000166,2.30e-14,22;UBERON:0003102,2.92e-14,99;UBERON:0002185,1.02e-12,5;UBERON:0001003,4.43e-11,15;UBERON:0007376,4.43e-11,15;UBERON:0007383,4.43e-11,15;UBERON:0000161,5.18e-11,36;UBERON:0000165,1.08e-10,29;UBERON:0000930,1.08e-10,29;UBERON:0001723,1.75e-10,3;UBERON:0001033,1.75e-10,3;UBERON:0010056,1.75e-10,3;UBERON:0001043,6.87e-10,3;UBERON:0009143,6.87e-10,3;UBERON:0001444,7.86e-10,49;UBERON:0001004,4.82e-09,74;UBERON:0000033,2.01e-08,56;UBERON:0007029,4.40e-08,1;UBERON:0004807,4.42e-08,28;UBERON:0003350,5.28e-08,8;UBERON:0001828,5.28e-08,8;UBERON:0000964,8.71e-08,4;UBERON:0010409,8.71e-08,4;UBERON:0004348,8.71e-08,4;UBERON:0005427,8.71e-08,4;UBERON:0004119,1.41e-07,160;UBERON:0000925,1.41e-07,160;UBERON:0006595,1.41e-07,160;UBERON:0000153,1.80e-07,62;UBERON:0007811,1.80e-07,62;UBERON:0000014,1.87e-07,4;UBERON:0000485,2.82e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67768489791571,1.8072355126695,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18577172975525,16.3145154825149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31913023795956,3.27295344709002,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53650399572076,0,4.82539067575828,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567100388969546,0.0895585227028483,0.290633938513962,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.70902131402557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72279661398852,7.15066270640173,0,0,0,0,0,0,0,0,0,1.32227932288782,0.384380134730212,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,0,0,0,0,3.36942951335251,11.5291839919536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.975966209950223,1.07730361905316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0,0,0,0,3.20063754411784,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,1.0063040627978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414432328326074,2.3900586793153,5.53007729451273,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4285549652957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05868461514708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852935927603924,0,0,0.186224142887574,0,0,0,18.0704900754478,24.9830309792255,0.875576689189638,0,0.332660356546013,0,0,0,0,2.34640942403454,0.244482888365733,4.47585796147312,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67768489791571,1.8072355126695,2.9580320813343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18577172975525,16.3145154825149,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.31913023795956,3.27295344709002,1.14721838155602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53650399572076,0,4.82539067575828,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567100388969546,0.0895585227028483,0.290633938513962,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.70902131402557,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.72279661398852,7.15066270640173,0,0,0,0,0,0,0,0,0,1.32227932288782,0.384380134730212,0,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,0,0,0,0,3.36942951335251,11.5291839919536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.975966209950223,1.07730361905316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0,0,0,0,0,0,3.20063754411784,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.2249738915515,0,0,1.0063040627978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196295437002051,0,0.366857197043358,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414432328326074,2.3900586793153,5.53007729451273,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4285549652957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05868461514708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.852935927603924,0,0,0.186224142887574,0,0,0,18.0704900754478,24.9830309792255,0.875576689189638,0,0.332660356546013,0,0,0,0,2.34640942403454,0.244482888365733,4.47585796147312,0,0,0 | ||
|short_description=p3@SPRR1B | |short_description=p3@SPRR1B | ||
}} | }} |
Latest revision as of 04:30, 17 September 2015
Short description: | p3@SPRR1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SPRR1B_5end |
Coexpression cluster: | C1778_tongue_Corneal_Urothelial_salivary_Esophageal_Sebocyte_Keratinocyte |
Association with transcript: | 194bp_to_BC156326, BC157076_5end |
EntrezGene: | SPRR1B |
HGNC: | 11260 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell | 5.22e-22 | 5 |
bronchial epithelial cell | 8.16e-21 | 3 |
gingival epithelial cell | 1.83e-20 | 3 |
protein secreting cell | 2.22e-18 | 6 |
endo-epithelial cell | 2.91e-17 | 42 |
general ecto-epithelial cell | 6.23e-17 | 14 |
corneal epithelial cell | 1.04e-14 | 2 |
sebum secreting cell | 1.47e-14 | 2 |
epithelial cell of sweat gland | 1.47e-14 | 2 |
epithelial cell of skin gland | 1.47e-14 | 2 |
acinar cell of sebaceous gland | 1.47e-14 | 2 |
glandular epithelial cell | 2.59e-12 | 9 |
epidermal cell | 3.37e-12 | 9 |
endodermal cell | 5.84e-12 | 58 |
epithelial cell of alimentary canal | 1.53e-11 | 20 |
ecto-epithelial cell | 1.80e-11 | 34 |
acinar cell of salivary gland | 4.38e-10 | 3 |
epithelial cell | 1.61e-08 | 253 |
respiratory epithelial cell | 2.21e-08 | 13 |
epithelial cell of esophagus | 6.19e-08 | 1 |
transitional epithelial cell | 6.87e-08 | 4 |
urothelial cell | 6.87e-08 | 4 |
epithelial cell of tracheobronchial tree | 2.82e-07 | 9 |
epithelial cell of lower respiratory tract | 2.82e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.21e-07 | 1 |
keratoacanthoma | 1.21e-07 | 1 |