FFCP PHASE1:Hg19::chr12:52911361..52911376,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:52911361..52911376,+
|short_description=p@chr12:52911361..52911376,+
|description=CAGE_peak_at_chr12:52911361..52911376,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:52911361..52911376,+ | |||
|coexpression_cluster_id=C207 | |||
|description=CAGE_peak_at_chr12:52911361..52911376,+ | |||
|id=chr12:52911361..52911376,+ | |||
|ontology_enrichment_celltype=CL:0002076!4.81e-28!43;CL:0002368!3.68e-23!13;CL:0000223!6.02e-19!59;CL:0000066!1.24e-17!254;CL:0002159!4.67e-16!13;CL:0002202!9.66e-13!9;CL:0002632!9.66e-13!9;CL:0002251!5.16e-11!21;CL:0000622!9.56e-11!5;CL:0000068!9.66e-11!3;CL:0000069!9.66e-11!3;CL:0000307!9.66e-11!3;CL:0000377!9.66e-11!3;CL:0002328!1.92e-10!3;CL:0000154!5.86e-09!6;CL:0002327!1.36e-08!4;CL:0000244!1.88e-08!4;CL:0000731!1.88e-08!4;CL:0000575!1.96e-08!2;CL:0002077!2.03e-08!33;CL:0000317!1.78e-07!2;CL:1000448!1.78e-07!2;CL:0002308!1.78e-07!2;CL:0002140!1.78e-07!2;CL:0002536!2.80e-07!2;CL:0000076!3.68e-07!62;CL:0000362!5.06e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002159;1.28e-20;14!CL:0002327;8.11e-19;4!CL:0000575;7.06e-18;2!CL:0000240;5.88e-13;6!CL:0000311;5.88e-13;6!CL:0000079;5.88e-13;6!CL:0000237;5.88e-13;6!CL:0002166;1.47e-11;3!CL:0002577;1.47e-11;3!CL:0000307;2.19e-11;3!CL:0002076;7.29e-10;42!CL:0002368;7.82e-10;13!CL:0002336;1.32e-09;1!CL:0002261;1.32e-09;1!CL:0002170;1.32e-09;1!CL:0002252;3.67e-09;1!CL:0000244;4.79e-09;4!CL:0000731;4.79e-09;4!CL:0002202;2.23e-08;9!CL:0002632;2.23e-08;9!CL:0000312;1.60e-07;5!CL:0002077;3.25e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,1.31e-20,14;CL:0002327,9.44e-19,4;CL:0000575,7.07e-18,2;CL:0002076,9.00e-14,42;CL:0000240,5.22e-13,6;CL:0000311,5.22e-13,6;CL:0000079,5.22e-13,6;CL:0000237,5.22e-13,6;CL:0000036,5.22e-13,6;CL:0000357,5.22e-13,6;CL:0000114,5.22e-13,6;CL:0002577,1.04e-11,3;CL:0000066,1.21e-11,253;CL:0002166,1.59e-11,3;CL:0000068,2.71e-11,3;CL:0000069,2.71e-11,3;CL:0000307,2.71e-11,3;CL:0000377,2.71e-11,3;CL:0002368,1.01e-09,13;CL:0002336,1.12e-09,1;CL:0002261,1.12e-09,1;CL:0002170,1.12e-09,1;CL:0000223,1.29e-09,58;CL:0002252,3.53e-09,1;CL:0000244,3.99e-09,4;CL:0000731,3.99e-09,4;CL:0002202,2.77e-08,9;CL:0002632,2.77e-08,9;CL:0002077,3.34e-08,34;CL:0000312,1.55e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000357;5.88e-13;6!CL:0000114;5.88e-13;6!CL:0000377;2.19e-11;3!CL:0000223;7.75e-08;58 | |||
|ontology_enrichment_disease=DOID:1749!7.71e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:3151;1.32e-09;1!DOID:3149;1.32e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.69e-09,1;DOID:3149,1.69e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!8.07e-16!72;UBERON:0004119!1.96e-12!169;UBERON:0000925!1.96e-12!169;UBERON:0006595!1.96e-12!169;UBERON:0000365!5.56e-11!5;UBERON:0000166!7.18e-11!21;UBERON:0000161!1.27e-10!35;UBERON:0003729!1.37e-10!5;UBERON:0007196!1.43e-10!14;UBERON:0001558!1.43e-10!14;UBERON:0004815!1.92e-10!3;UBERON:0002031!1.92e-10!3;UBERON:0000974!2.56e-10!10;UBERON:0000065!5.01e-10!53;UBERON:0000165!1.00e-09!28;UBERON:0000930!1.00e-09!28;UBERON:0005910!3.76e-09!6;UBERON:0000344!5.45e-09!12;UBERON:0003102!5.52e-09!95;UBERON:0001911!1.36e-08!4;UBERON:0005333!1.36e-08!4;UBERON:0008425!1.36e-08!4;UBERON:0005311!1.36e-08!4;UBERON:0002185!6.23e-08!4;UBERON:0005631!6.83e-08!14;UBERON:0000158!6.83e-08!14;UBERON:0003126!1.04e-07!7;UBERON:0001005!1.04e-07!7;UBERON:0003343!1.49e-07!4;UBERON:0004785!1.49e-07!4;UBERON:0002419!1.78e-07!2;UBERON:0007771!1.78e-07!2;UBERON:0003297!1.78e-07!2;UBERON:0001821!1.78e-07!2;UBERON:0003487!1.78e-07!2;UBERON:0001820!1.78e-07!2;UBERON:0005089!1.78e-07!2;UBERON:0005088!1.78e-07!2;UBERON:0001444!2.20e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0001911;8.11e-19;4!UBERON:0000964;2.17e-09;4!UBERON:0010409;2.17e-09;4!UBERON:0001987;6.86e-09;4!UBERON:0001708;6.86e-09;4!UBERON:0008895;6.86e-09;4!UBERON:0000365;2.11e-07;5!UBERON:0011159;2.81e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,9.44e-19,4;UBERON:0005333,9.44e-19,4;UBERON:0008425,9.44e-19,4;UBERON:0005311,9.44e-19,4;UBERON:0003102,1.14e-09,99;UBERON:0000076,1.19e-09,8;UBERON:0000964,2.17e-09,4;UBERON:0010409,2.17e-09,4;UBERON:0004348,2.17e-09,4;UBERON:0005427,2.17e-09,4;UBERON:0001987,5.30e-09,4;UBERON:0004340,5.30e-09,4;UBERON:0001708,7.29e-09,4;UBERON:0008895,7.29e-09,4;UBERON:0000033,3.44e-08,56;UBERON:0005157,1.25e-07,47;UBERON:0000365,1.83e-07,5;UBERON:0000153,2.71e-07,62;UBERON:0007811,2.71e-07,62;UBERON:0011159,2.94e-07,5;UBERON:0004119,3.93e-07,160;UBERON:0000925,3.93e-07,160;UBERON:0006595,3.93e-07,160 | |||
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| ||
|short_description=p@chr12:52911361..52911376,+ | |||
}} | }} |
Latest revision as of 09:36, 24 July 2015
Short description: | p@chr12:52911361..52911376, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52911361..52911376, + |
Coexpression cluster: | C207_Corneal_Keratinocyte_Esophageal_Mammary_Bronchial_Urothelial_Sebocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mammary gland | 9.44e-19 | 4 |
mammary bud | 9.44e-19 | 4 |
mammary ridge | 9.44e-19 | 4 |
mammary placode | 9.44e-19 | 4 |
surface structure | 1.14e-09 | 99 |
external ectoderm | 1.19e-09 | 8 |
cornea | 2.17e-09 | 4 |
eye surface | 2.17e-09 | 4 |
optic eminence | 2.17e-09 | 4 |
corneal primordium | 2.17e-09 | 4 |
placenta | 5.30e-09 | 4 |
allantois | 5.30e-09 | 4 |
jaw skeleton | 7.29e-09 | 4 |
splanchnocranium | 7.29e-09 | 4 |
head | 3.44e-08 | 56 |
epithelial fold | 1.25e-07 | 47 |
urothelium | 1.83e-07 | 5 |
anterior region of body | 2.71e-07 | 62 |
craniocervical region | 2.71e-07 | 62 |
primary subdivision of cranial skeletal system | 2.94e-07 | 5 |
endoderm-derived structure | 3.93e-07 | 160 |
endoderm | 3.93e-07 | 160 |
presumptive endoderm | 3.93e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.69e-09 | 1 |
keratoacanthoma | 1.69e-09 | 1 |