FFCP PHASE1:Hg19::chr17:39681578..39681594,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:39681578..39681594,-
|short_description=p5@KRT19
|description=CAGE_peak_5_at_KRT19_5end
|association_with_transcript=-105bp_to_ENST00000479031_5end
|Entr...") |
No edit summary |
||
(12 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3880 | |EntrezGene=3880 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6436 | |HGNC=6436 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-105bp_to_ENST00000479031_5end | |||
|cluster_id=chr17:39681578..39681594,- | |||
|description=CAGE_peak_5_at_KRT19_5end | |||
|id=chr17:39681578..39681594,- | |||
|ontology_enrichment_celltype=CL:0000066!7.61e-23!254;CL:0002076!5.26e-16!43;CL:0002368!1.79e-14!13;CL:0000223!1.12e-11!59;CL:0002202!6.59e-09!9;CL:0002632!6.59e-09!9;CL:0000077!2.79e-08!19;CL:0000244!1.65e-07!4;CL:0000731!1.65e-07!4;CL:0000076!2.03e-07!62;CL:1000497!3.04e-07!18;CL:0002518!3.04e-07!18;CL:0002251!8.59e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002368;3.54e-18;13!CL:0002076;5.20e-12;42!CL:0000575;4.28e-11;2!CL:0000650;9.61e-11;2!CL:1000500;9.61e-11;2!CL:1000618;9.61e-11;2!CL:1001318;9.61e-11;2!CL:0002173;9.61e-11;2!CL:0002537;2.73e-10;5!CL:0002202;2.94e-09;9!CL:0002632;2.94e-09;9!CL:0000307;4.57e-08;3!CL:0002231;5.25e-08;3!CL:0002328;1.92e-07;3!CL:1000746;5.95e-07;7!CL:1000612;5.95e-07;7!CL:0002681;8.93e-07;12!CL:0002584;8.93e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,5.22e-18,13;CL:0002076,2.27e-17,42;CL:0000066,1.45e-12,253;CL:0000223,7.72e-12,58;CL:0000575,5.26e-11,2;CL:0000650,1.18e-10,2;CL:1000500,1.18e-10,2;CL:1000618,1.18e-10,2;CL:1001318,1.18e-10,2;CL:0002173,1.18e-10,2;CL:0002537,2.69e-10,5;CL:0002202,3.39e-09,9;CL:0002632,3.39e-09,9;CL:0002231,4.50e-08,3;CL:0000068,5.54e-08,3;CL:0000069,5.54e-08,3;CL:0000307,5.54e-08,3;CL:0000377,5.54e-08,3;CL:0002328,1.99e-07,3;CL:1000746,7.03e-07,7;CL:1000612,7.03e-07,7;CL:0002681,9.52e-07,12;CL:0002584,9.52e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000223;1.02e-08;58!CL:0000377;4.57e-08;3 | |||
|ontology_enrichment_disease=DOID:305!6.87e-07!106 | |||
|ontology_enrichment_disease_v019=DOID:5093;3.37e-12;4!DOID:1612;3.37e-12;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,3.19e-12,4;DOID:1612,3.19e-12,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.14e-14!169;UBERON:0000925!1.14e-14!169;UBERON:0006595!1.14e-14!169;UBERON:0001008!1.35e-11!45;UBERON:0006554!1.04e-10!44;UBERON:0001004!4.30e-10!72;UBERON:0005631!8.04e-10!14;UBERON:0000158!8.04e-10!14;UBERON:0000065!2.06e-09!53;UBERON:0005177!3.77e-09!107;UBERON:0000077!4.20e-09!130;UBERON:0000464!4.34e-09!104;UBERON:0005911!6.77e-09!82;UBERON:0001007!9.49e-09!155;UBERON:0001555!9.49e-09!155;UBERON:0007026!9.49e-09!155;UBERON:0000365!9.93e-09!5;UBERON:0007196!1.55e-08!14;UBERON:0001558!1.55e-08!14;UBERON:0005178!2.64e-08!34;UBERON:0002224!2.64e-08!34;UBERON:0005181!5.98e-08!35;UBERON:0002294!1.10e-07!7;UBERON:0001173!1.10e-07!7;UBERON:0004912!1.10e-07!7;UBERON:0000466!1.11e-07!126;UBERON:0003064!2.22e-07!37;UBERON:0009569!2.47e-07!113;UBERON:0000161!3.00e-07!35;UBERON:0000478!3.44e-07!24;UBERON:0005910!3.61e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0003567;9.61e-11;2!UBERON:0003838;9.61e-11;2!UBERON:0003586;9.61e-11;2!UBERON:0005169;9.61e-11;2!UBERON:0002321;9.61e-11;2!UBERON:0005215;9.61e-11;2!UBERON:0002303;9.61e-11;2!UBERON:0002319;9.61e-11;2!UBERON:0005631;1.38e-08;10!UBERON:0000158;1.38e-08;10!UBERON:0001851;3.65e-08;15!UBERON:0000305;1.83e-07;7!UBERON:0004815;1.92e-07;3!UBERON:0002031;1.92e-07;3!UBERON:0000074;5.95e-07;7!UBERON:0001229;5.95e-07;7!UBERON:0001225;8.93e-07;12!UBERON:0008987;8.93e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003567,1.18e-10,2;UBERON:0003838,1.18e-10,2;UBERON:0003586,1.18e-10,2;UBERON:0005169,1.18e-10,2;UBERON:0002321,1.18e-10,2;UBERON:0005215,1.18e-10,2;UBERON:0002303,1.18e-10,2;UBERON:0002319,1.18e-10,2;UBERON:0001851,3.72e-08,15;UBERON:0000305,1.81e-07,7;UBERON:0004815,1.99e-07,3;UBERON:0002031,1.99e-07,3;UBERON:0010532,7.03e-07,7;UBERON:0000074,7.03e-07,7;UBERON:0001229,7.03e-07,7;UBERON:0001230,7.03e-07,7;UBERON:0003220,7.03e-07,7;UBERON:0005749,7.03e-07,7;UBERON:0004199,7.03e-07,7;UBERON:0004209,7.03e-07,7;UBERON:0004198,7.03e-07,7;UBERON:0001225,9.52e-07,12;UBERON:0008987,9.52e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,2.09340350391728,0.218441372130172,0.263766978228454,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,1.83884244895785,0.90361775633475,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,1.09288586487763,2.96627554227544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61656431285521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0.194874010322397,0,0,0,0,0.10075209822764,0,0.57978255948989,0.818238361772504,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29623823221941,0,0,0,0,0,0,0,0,1.58040879591855,4.29243081047436,0,0,0,0,0.503946384596579,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,1.74306691720059,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50051156317903,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0.195801157462741,0,0,0,0,0.606255142892519,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,4.41114234667227,2.85451065701279,0,0,0,0,0.231046011313244,0,0,0.211103257785751,0,0,0,0,1.35473218771926,1.50506932156456,0.509752546090077,1.66215201785745,0.223874754722178,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14870389969272,1.53752053892085,0.382838137483752,1.2138933702666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02066436723575,8.04362730642945,0,0,0.86101074534246,1.68471475667626,2.21715076768338,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5047573284584,2.37571744666111,8.29333895667927,0,0,0,0,0,0.19924798825107,0,0,0.20453736500431,0,0,0.449341755736634,0.179021174675609,0,0.295930216910801,0,0,0,0,0,0,2.44887999989348,0,0.682760689712998,0.254253650292766,0,9.30807107751954,0,0,0,0,0,0,0,0,0,6.41349223681575,0.230850775511391,0,0,0,0,1.91400695839152,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261177619741208,0,0,0,0,0.0821154570532092,0.387956065953678,0,0.451961481561065,0,0,0,0.782205530939212,0.561111741760736,0.85381197895741,1.19885765749278,0,0,0,0,0.372757606696298,0,0.135904206073614,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0.213574825135389,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6468607378872,0,5.07223600137888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450772826991655,1.14241563650639,0.813741466409323,0,0.429642228169954,0,0,0,0,0,0,0,2.78774068787403,0,0,0.231522474323834,0,0.895444205407437,0.308801447160972,0.438568099157414,1.59020231351293,0.38582807654183,0.844712203265363,0,0,0,0.138258436151731,0,0,0,0,0,1.90180911022764,0,0,0,0,0,0.139879507719444,1.86623178009892,0,0.323474434190045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0,0.183428598521679,0.115525666150338,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,1.02209942111676,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.333694205676207,0.078493092850514,0,0,0,0.863710364874486,0.47775168788705,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0.129177819672012,0.0620747142958579,0,0,0,0,0.342233301085281,0.134704106029175,0.502055437748735,0.665320713092027,0.407016343054873,0,0,0.179650404213174,2.34640942403454,0,0,0.665756774185513,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.737201809504527,2.09340350391728,0.218441372130172,0.263766978228454,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,1.83884244895785,0.90361775633475,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,1.09288586487763,2.96627554227544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.61656431285521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211931901159562,0,0,0,0,0,0.194874010322397,0,0,0,0,0.10075209822764,0,0.57978255948989,0.818238361772504,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29623823221941,0,0,0,0,0,0,0,0,1.58040879591855,4.29243081047436,0,0,0,0,0.503946384596579,0.283550194484773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,1.74306691720059,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50051156317903,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0.195801157462741,0,0,0,0,0.606255142892519,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,4.41114234667227,2.85451065701279,0,0,0,0,0.231046011313244,0,0,0.211103257785751,0,0,0,0,1.35473218771926,1.50506932156456,0.509752546090077,1.66215201785745,0.223874754722178,0,0,0,0.328014645699706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14870389969272,1.53752053892085,0.382838137483752,1.2138933702666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.02066436723575,8.04362730642945,0,0,0.86101074534246,1.68471475667626,2.21715076768338,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5047573284584,2.37571744666111,8.29333895667927,0,0,0,0,0,0.19924798825107,0,0,0.20453736500431,0,0,0.449341755736634,0.179021174675609,0,0.295930216910801,0,0,0,0,0,0,2.44887999989348,0,0.682760689712998,0.254253650292766,0,9.30807107751954,0,0,0,0,0,0,0,0,0,6.41349223681575,0.230850775511391,0,0,0,0,1.91400695839152,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261177619741208,0,0,0,0,0.0821154570532092,0.387956065953678,0,0.451961481561065,0,0,0,0.782205530939212,0.561111741760736,0.85381197895741,1.19885765749278,0,0,0,0,0.372757606696298,0,0.135904206073614,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704815022316672,0.213574825135389,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6468607378872,0,5.07223600137888,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450772826991655,1.14241563650639,0.813741466409323,0,0.429642228169954,0,0,0,0,0,0,0,2.78774068787403,0,0,0.231522474323834,0,0.895444205407437,0.308801447160972,0.438568099157414,1.59020231351293,0.38582807654183,0.844712203265363,0,0,0,0.138258436151731,0,0,0,0,0,1.90180911022764,0,0,0,0,0,0.139879507719444,1.86623178009892,0,0.323474434190045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0,0.183428598521679,0.115525666150338,0,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,1.02209942111676,0,0,0,0,0.0887023701626388,0,0,0,0,0,0.333694205676207,0.078493092850514,0,0,0,0.863710364874486,0.47775168788705,0,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0.129177819672012,0.0620747142958579,0,0,0,0,0.342233301085281,0.134704106029175,0.502055437748735,0.665320713092027,0.407016343054873,0,0,0.179650404213174,2.34640942403454,0,0,0.665756774185513,0,0 | ||
|short_description=p5@KRT19 | |||
}} | }} |
Latest revision as of 05:58, 20 September 2015
Short description: | p5@KRT19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_KRT19_5end |
Coexpression cluster: | NA |
Association with transcript: | -105bp_to_ENST00000479031_5end |
EntrezGene: | KRT19 |
HGNC: | 6436 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 5.22e-18 | 13 |
endo-epithelial cell | 2.27e-17 | 42 |
epithelial cell | 1.45e-12 | 253 |
endodermal cell | 7.72e-12 | 58 |
corneal epithelial cell | 5.26e-11 | 2 |
mesangial cell | 1.18e-10 | 2 |
kidney interstitial cell | 1.18e-10 | 2 |
juxtaglomerular complex cell | 1.18e-10 | 2 |
renal interstitial pericyte | 1.18e-10 | 2 |
extraglomerular mesangial cell | 1.18e-10 | 2 |
amnion mesenchymal stem cell | 2.69e-10 | 5 |
epithelial cell of tracheobronchial tree | 3.39e-09 | 9 |
epithelial cell of lower respiratory tract | 3.39e-09 | 9 |
epithelial cell of prostate | 4.50e-08 | 3 |
duct epithelial cell | 5.54e-08 | 3 |
branched duct epithelial cell | 5.54e-08 | 3 |
tracheal epithelial cell | 5.54e-08 | 3 |
tracheoblast | 5.54e-08 | 3 |
bronchial epithelial cell | 1.99e-07 | 3 |
glomerular cell | 7.03e-07 | 7 |
kidney corpuscule cell | 7.03e-07 | 7 |
kidney cortical cell | 9.52e-07 | 12 |
renal cortical epithelial cell | 9.52e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
abdomen connective tissue | 1.18e-10 | 2 |
abdominal segment connective tissue | 1.18e-10 | 2 |
trunk connective tissue | 1.18e-10 | 2 |
interstitial tissue | 1.18e-10 | 2 |
extraglomerular mesangium | 1.18e-10 | 2 |
kidney interstitium | 1.18e-10 | 2 |
juxtaglomerular apparatus | 1.18e-10 | 2 |
mesangium | 1.18e-10 | 2 |
cortex | 3.72e-08 | 15 |
amnion | 1.81e-07 | 7 |
lower respiratory tract epithelium | 1.99e-07 | 3 |
epithelium of bronchus | 1.99e-07 | 3 |
primitive nephron | 7.03e-07 | 7 |
renal glomerulus | 7.03e-07 | 7 |
renal corpuscle | 7.03e-07 | 7 |
glomerular capsule | 7.03e-07 | 7 |
metanephric mesenchyme | 7.03e-07 | 7 |
glomerular tuft | 7.03e-07 | 7 |
S-shaped body | 7.03e-07 | 7 |
renal vesicle | 7.03e-07 | 7 |
comma-shaped body | 7.03e-07 | 7 |
cortex of kidney | 9.52e-07 | 12 |
renal parenchyma | 9.52e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 3.19e-12 | 4 |
breast cancer | 3.19e-12 | 4 |