FFCP PHASE1:Hg19::chr20:22565370..22565388,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr20:22565370..22565388,-
|short_description=p2@FOXA2
|description=CAGE_peak_2_at_FOXA2_5end
|association_with_transcript=-269bp_to_ENST00000319993,ENST0000041...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3170 | |EntrezGene=3170 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5022 | |HGNC=5022 | ||
|TSSclassifier=strong | |||
|UniProt=Q9Y261,B0ZTD4 | |UniProt=Q9Y261,B0ZTD4 | ||
|association_with_transcript=-269bp_to_ENST00000319993,ENST00000419308,NM_021784,uc002wsm.2_5end | |||
|cluster_id=chr20:22565370..22565388,- | |||
|coexpression_cluster_id=C4016 | |||
|description=CAGE_peak_2_at_FOXA2_5end | |||
|id=chr20:22565370..22565388,- | |||
|ontology_enrichment_celltype=CL:0000066!1.71e-21!254;CL:0000223!7.82e-21!59;CL:0002076!1.92e-16!43;CL:0002368!1.81e-14!13;CL:0000082!2.34e-10!19;CL:0002202!8.29e-10!9;CL:0002632!8.29e-10!9 | |||
|ontology_enrichment_celltype_v019=CL:0002368;5.19e-23;13!CL:0002202;1.87e-15;9!CL:0002632;1.87e-15;9!CL:0000082;4.70e-15;19!CL:0002076;5.52e-15;42!CL:0002328;7.37e-08;3!CL:0000307;1.25e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,1.06e-23,58;CL:0002368,3.80e-23,13;CL:0000066,2.32e-21,253;CL:0002076,8.45e-19,42;CL:0002202,1.88e-15,9;CL:0002632,1.88e-15,9;CL:0000082,4.02e-15,19;CL:0002328,6.12e-08,3;CL:0000068,1.51e-07,3;CL:0000069,1.51e-07,3;CL:0000307,1.51e-07,3;CL:0000377,1.51e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0001041;4.04e-23;30!UBERON:0009497;3.65e-16;13!CL:0000223;2.12e-14;58!UBERON:0004161;1.65e-12;11!CL:0000377;1.25e-07;3 | |||
|ontology_enrichment_disease=DOID:305!3.45e-18!106;DOID:0050687!2.01e-12!143;DOID:162!3.21e-08!235;DOID:14566!1.04e-07!239;DOID:0050615!1.76e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:0050615;1.74e-10;16!DOID:1324;9.34e-09;15!DOID:305;8.76e-08;106!DOID:3119;1.43e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.42e-17,106;DOID:0050687,7.47e-12,143;DOID:0050615,1.70e-10,16;DOID:1324,9.15e-09,15;DOID:3119,1.52e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.59e-31!169;UBERON:0000925!3.59e-31!169;UBERON:0006595!3.59e-31!169;UBERON:0001007!2.61e-29!155;UBERON:0001555!2.61e-29!155;UBERON:0007026!2.61e-29!155;UBERON:0004921!6.64e-27!129;UBERON:0004185!6.64e-27!129;UBERON:0005911!1.38e-23!82;UBERON:0000077!3.72e-22!130;UBERON:0000466!2.49e-19!126;UBERON:0001041!9.35e-19!98;UBERON:0005177!2.13e-16!107;UBERON:0001048!2.03e-14!168;UBERON:0005178!2.25e-14!34;UBERON:0002224!2.25e-14!34;UBERON:0005153!8.37e-14!37;UBERON:0005181!9.21e-14!35;UBERON:0002048!3.57e-13!22;UBERON:0000117!3.57e-13!22;UBERON:0000171!3.57e-13!22;UBERON:0000170!3.57e-13!22;UBERON:0005597!3.57e-13!22;UBERON:0000118!3.57e-13!22;UBERON:0003929!4.63e-13!54;UBERON:0000065!1.28e-12!53;UBERON:0000464!3.31e-12!104;UBERON:0009497!1.15e-11!25;UBERON:0000015!1.15e-11!25;UBERON:0002423!1.15e-11!25;UBERON:0006235!1.15e-11!25;UBERON:0004161!1.15e-11!25;UBERON:0005409!2.79e-11!35;UBERON:0009856!4.02e-11!26;UBERON:0001004!4.26e-11!72;UBERON:0000160!4.47e-11!27;UBERON:0008947!9.44e-11!38;UBERON:0003258!9.44e-11!38;UBERON:0007499!1.80e-10!25;UBERON:0004802!2.34e-10!19;UBERON:0000115!2.34e-10!19;UBERON:0005157!3.50e-10!51;UBERON:0009854!7.30e-10!23;UBERON:0009569!3.17e-09!113;UBERON:0008835!3.23e-09!22;UBERON:0003894!3.23e-09!22;UBERON:0004807!9.04e-09!28;UBERON:0003104!2.54e-08!238;UBERON:0009142!2.54e-08!238;UBERON:0007196!3.13e-08!14;UBERON:0001558!3.13e-08!14;UBERON:0000072!1.40e-07!46;UBERON:0000949!1.61e-07!45;UBERON:0000481!1.66e-07!347;UBERON:0000344!1.74e-07!12;UBERON:0000915!3.75e-07!52;UBERON:0002108!4.13e-07!14;UBERON:0002107!8.45e-07!19;UBERON:0006925!8.45e-07!19;UBERON:0008836!8.45e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0002048;2.92e-17;22!UBERON:0000117;2.92e-17;22!UBERON:0000171;2.92e-17;22!UBERON:0000170;2.92e-17;22!UBERON:0005178;3.89e-15;34!UBERON:0002224;3.89e-15;34!UBERON:0004802;4.70e-15;19!UBERON:0000115;4.70e-15;19!UBERON:0005181;6.97e-15;35!UBERON:0004807;1.34e-12;22!UBERON:0000065;1.59e-12;44!UBERON:0002423;1.15e-10;25!UBERON:0005409;1.25e-09;22!UBERON:0000072;6.24e-09;37!UBERON:0005911;7.68e-09;36!UBERON:0007196;1.17e-08;15!UBERON:0001558;1.17e-08;15!UBERON:0000485;3.75e-08;7!UBERON:0004815;7.37e-08;3!UBERON:0002031;7.37e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,4.75e-24,118;UBERON:0004119,3.16e-22,160;UBERON:0000925,3.16e-22,160;UBERON:0006595,3.16e-22,160;UBERON:0001007,8.81e-21,145;UBERON:0001555,8.81e-21,145;UBERON:0007026,8.81e-21,145;UBERON:0001041,1.80e-18,87;UBERON:0005911,2.96e-18,82;UBERON:0005178,2.18e-17,34;UBERON:0002224,2.18e-17,34;UBERON:0002048,2.53e-17,22;UBERON:0000117,2.53e-17,22;UBERON:0000171,2.53e-17,22;UBERON:0000170,2.53e-17,22;UBERON:0005597,2.53e-17,22;UBERON:0000118,2.53e-17,22;UBERON:0005177,8.13e-17,101;UBERON:0005181,9.46e-17,35;UBERON:0005153,1.59e-15,37;UBERON:0004802,4.02e-15,19;UBERON:0000115,4.02e-15,19;UBERON:0000065,1.19e-14,54;UBERON:0005157,2.99e-14,47;UBERON:0008947,3.40e-13,38;UBERON:0003258,3.40e-13,38;UBERON:0007499,1.01e-10,25;UBERON:0009497,1.50e-10,25;UBERON:0000015,1.50e-10,25;UBERON:0002423,1.50e-10,25;UBERON:0006235,1.50e-10,25;UBERON:0004161,1.50e-10,25;UBERON:0001004,2.53e-10,74;UBERON:0009856,3.37e-10,26;UBERON:0000915,9.82e-10,52;UBERON:0009569,2.01e-09,112;UBERON:0004807,2.47e-09,28;UBERON:0011216,3.72e-09,223;UBERON:0008835,1.15e-08,22;UBERON:0003894,1.15e-08,22;UBERON:0007196,1.17e-08,15;UBERON:0001558,1.17e-08,15;UBERON:0000072,1.20e-08,47;UBERON:0005409,2.66e-08,25;UBERON:0009854,3.38e-08,23;UBERON:0001048,5.40e-08,160;UBERON:0004815,6.12e-08,3;UBERON:0002031,6.12e-08,3;UBERON:0003929,6.15e-08,54;UBERON:0002100,3.80e-07,199 | |||
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| ||
|short_description=p2@FOXA2 | |||
}} | }} |
Latest revision as of 19:03, 24 September 2015
Short description: | p2@FOXA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_FOXA2_5end |
Coexpression cluster: | C4016_gastrointestinal_anaplastic_maxillary_small_smallcell_argyrophil_Bronchial |
Association with transcript: | -269bp_to_ENST00000319993, ENST00000419308, NM_021784, uc002wsm.2_5end |
EntrezGene: | FOXA2 |
HGNC: | 5022 |
UniProt: | Q9Y261B0ZTD4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 1.06e-23 | 58 |
respiratory epithelial cell | 3.80e-23 | 13 |
epithelial cell | 2.32e-21 | 253 |
endo-epithelial cell | 8.45e-19 | 42 |
epithelial cell of tracheobronchial tree | 1.88e-15 | 9 |
epithelial cell of lower respiratory tract | 1.88e-15 | 9 |
epithelial cell of lung | 4.02e-15 | 19 |
bronchial epithelial cell | 6.12e-08 | 3 |
duct epithelial cell | 1.51e-07 | 3 |
branched duct epithelial cell | 1.51e-07 | 3 |
tracheal epithelial cell | 1.51e-07 | 3 |
tracheoblast | 1.51e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.42e-17 | 106 |
cell type cancer | 7.47e-12 | 143 |
respiratory system cancer | 1.70e-10 | 16 |
lung cancer | 9.15e-09 | 15 |
gastrointestinal system cancer | 1.52e-07 | 14 |