FFCP PHASE1:Hg19::chr4:71384280..71384295,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr4:71384280..71384295,+
|short_description=p1@AMTN
|description=CAGE_peak_1_at_AMTN_5end
|association_with_transcript=-2bp_to_NM_212557,uc003hfk.1,uc010ihy.1_...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=401138 | |EntrezGene=401138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33188 | |HGNC=33188 | ||
|TSSclassifier=strong | |||
|UniProt=F1T0L8,Q6UX39 | |UniProt=F1T0L8,Q6UX39 | ||
|association_with_transcript=-2bp_to_NM_212557,uc003hfk.1,uc010ihy.1_5end | |||
|cluster_id=chr4:71384280..71384295,+ | |||
|coexpression_cluster_id=C536 | |||
|description=CAGE_peak_1_at_AMTN_5end | |||
|id=chr4:71384280..71384295,+ | |||
|ontology_enrichment_celltype=CL:0002076!8.76e-16!43;CL:0000066!9.56e-14!254;CL:0002368!6.49e-11!13;CL:0000223!6.47e-10!59;CL:0000244!1.70e-09!4;CL:0000731!1.70e-09!4;CL:0000306!5.22e-09!4;CL:0002222!5.22e-09!4;CL:0002224!5.22e-09!4;CL:0000220!1.00e-08!246;CL:0002321!1.48e-08!248;CL:0002166!7.19e-08!3;CL:0002202!1.88e-07!9;CL:0002632!1.88e-07!9;CL:0000064!2.05e-07!3;CL:0005012!2.05e-07!3;CL:0000067!2.05e-07!3;CL:0002304!2.05e-07!3;CL:0002621!2.75e-07!3;CL:0000068!8.08e-07!3;CL:0000069!8.08e-07!3;CL:0000307!8.08e-07!3;CL:0000377!8.08e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000244;3.77e-19;4!CL:0000731;3.77e-19;4!CL:0002166;1.67e-15;3!CL:0000064;1.53e-14;3!CL:0000067;1.53e-14;3!CL:0005012;1.53e-14;3!CL:0002304;1.53e-14;3!CL:0002076;1.75e-12;42!CL:0000306;5.52e-11;4!CL:0002222;5.52e-11;4!CL:0002224;5.52e-11;4!CL:0002368;2.34e-08;13!CL:0000075;2.07e-07;27!CL:0002621;2.52e-07;3!CL:0002586;7.93e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,4.34e-19,4;CL:0000731,4.34e-19,4;CL:0000066,3.84e-16,253;CL:0002076,6.95e-16,42;CL:0002166,1.67e-15,3;CL:0000064,1.68e-14,3;CL:0000067,1.68e-14,3;CL:0005012,1.68e-14,3;CL:0002304,1.68e-14,3;CL:0000306,5.16e-11,4;CL:0002222,5.16e-11,4;CL:0002224,5.16e-11,4;CL:0000223,9.71e-11,58;CL:0002368,2.77e-08,13;CL:0002321,5.16e-08,250;CL:0000075,2.08e-07,27;CL:0002621,2.37e-07,3;CL:0002586,6.33e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007625!2.52e-18!11;UBERON:0001444!1.62e-13!48;UBERON:0000020!2.98e-12!23;UBERON:0001032!1.34e-11!24;UBERON:0004456!1.34e-11!24;UBERON:0000019!2.27e-11!19;UBERON:0000047!2.27e-11!19;UBERON:0004088!2.27e-11!19;UBERON:0003072!2.27e-11!19;UBERON:0003071!2.27e-11!19;UBERON:0004128!2.27e-11!19;UBERON:0000365!5.14e-11!5;UBERON:0005085!9.48e-11!29;UBERON:0000970!1.16e-10!20;UBERON:0002104!5.02e-10!21;UBERON:0001456!5.02e-10!21;UBERON:0000488!2.19e-09!4;UBERON:0005910!4.39e-09!6;UBERON:0010077!5.22e-09!4;UBERON:0005389!5.22e-09!4;UBERON:0000484!5.22e-09!4;UBERON:0002546!5.22e-09!4;UBERON:0000965!5.22e-09!4;UBERON:0001803!5.22e-09!4;UBERON:0003073!5.22e-09!4;UBERON:0005426!5.22e-09!4;UBERON:0001801!8.51e-09!14;UBERON:0000166!9.12e-08!21;UBERON:0001004!1.88e-07!72;UBERON:0001778!2.05e-07!3;UBERON:0001775!2.05e-07!3;UBERON:0001949!2.75e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;3.22e-32;11!UBERON:0000488;6.58e-19;4!UBERON:0010371;1.45e-18;31!UBERON:0000019;5.43e-18;19!UBERON:0000047;5.43e-18;19!UBERON:0004088;5.43e-18;19!UBERON:0010230;5.43e-18;19!UBERON:0000970;5.17e-17;20!UBERON:0002104;3.97e-16;21!UBERON:0001456;3.97e-16;21!UBERON:0001801;2.36e-15;14!UBERON:0000365;2.39e-15;5!UBERON:0000020;1.38e-14;23!UBERON:0001778;1.53e-14;3!UBERON:0001775;1.53e-14;3!UBERON:0001032;6.49e-14;24!UBERON:0004456;6.49e-14;24!UBERON:0000486;1.08e-13;12!UBERON:0005910;8.26e-13;6!UBERON:0002203;1.19e-12;6!UBERON:0001768;1.19e-12;6!UBERON:0002200;1.19e-12;6!UBERON:0001708;9.62e-12;4!UBERON:0008895;9.62e-12;4!UBERON:0010077;5.52e-11;4!UBERON:0005389;5.52e-11;4!UBERON:0000484;5.52e-11;4!UBERON:0000965;5.52e-11;4!UBERON:0001803;5.52e-11;4!UBERON:0001444;5.61e-11;48!UBERON:0006562;3.60e-10;2!UBERON:0000033;1.49e-09;50!UBERON:0011159;1.77e-09;5!UBERON:0007811;8.06e-08;52!UBERON:0000153;2.07e-07;54!UBERON:0001949;2.52e-07;3!UBERON:0006876;6.29e-07;11!UBERON:0001781;7.93e-07;3!UBERON:0001782;7.93e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,2.53e-32,11;UBERON:0000033,3.38e-20,56;UBERON:0000488,7.57e-19,4;UBERON:0000153,7.34e-18,62;UBERON:0007811,7.34e-18,62;UBERON:0000019,4.55e-17,20;UBERON:0000047,4.55e-17,20;UBERON:0010312,4.55e-17,20;UBERON:0004088,4.55e-17,20;UBERON:0010230,4.55e-17,20;UBERON:0003072,4.55e-17,20;UBERON:0004128,4.55e-17,20;UBERON:0003071,4.55e-17,20;UBERON:0000970,3.52e-16,21;UBERON:0002104,3.52e-16,21;UBERON:0001444,2.04e-15,49;UBERON:0001456,2.26e-15,22;UBERON:0001801,2.41e-15,14;UBERON:0000365,2.67e-15,5;UBERON:0001778,1.68e-14,3;UBERON:0001775,1.68e-14,3;UBERON:0000020,5.84e-14,24;UBERON:0001032,5.84e-14,24;UBERON:0004456,5.84e-14,24;UBERON:0005085,7.09e-13,31;UBERON:0005910,9.06e-13,6;UBERON:0002203,1.31e-12,6;UBERON:0001768,1.31e-12,6;UBERON:0002200,1.31e-12,6;UBERON:0001708,9.63e-12,4;UBERON:0008895,9.63e-12,4;UBERON:0010077,5.16e-11,4;UBERON:0005389,5.16e-11,4;UBERON:0000484,5.16e-11,4;UBERON:0002546,5.16e-11,4;UBERON:0000965,5.16e-11,4;UBERON:0001803,5.16e-11,4;UBERON:0003073,5.16e-11,4;UBERON:0005426,5.16e-11,4;UBERON:0011159,1.77e-09,5;UBERON:0010188,5.81e-08,6;UBERON:0002539,5.81e-08,6;UBERON:0008816,5.81e-08,6;UBERON:0001949,2.37e-07,3;UBERON:0001782,6.33e-07,3;UBERON:0005424,6.33e-07,3;UBERON:0006876,6.60e-07,11 | |||
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| ||
|short_description=p1@AMTN | |||
}} | }} |
Latest revision as of 10:48, 18 September 2015
Short description: | p1@AMTN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_AMTN_5end |
Coexpression cluster: | C536_Chondrocyte_Mallassezderived_liver_mesothelioma_Adipocyte_serous_tenocyte |
Association with transcript: | -2bp_to_NM_212557, uc003hfk.1, uc010ihy.1_5end |
EntrezGene: | AMTN |
HGNC: | 33188 |
UniProt: | F1T0L8Q6UX39 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 4.34e-19 | 4 |
urothelial cell | 4.34e-19 | 4 |
epithelial cell | 3.84e-16 | 253 |
endo-epithelial cell | 6.95e-16 | 42 |
epithelial cell of Malassez | 1.67e-15 | 3 |
ciliated cell | 1.68e-14 | 3 |
ciliated epithelial cell | 1.68e-14 | 3 |
multi-ciliated epithelial cell | 1.68e-14 | 3 |
non-pigmented ciliary epithelial cell | 1.68e-14 | 3 |
crystallin accumulating cell | 5.16e-11 | 4 |
vertebrate lens cell | 5.16e-11 | 4 |
lens epithelial cell | 5.16e-11 | 4 |
endodermal cell | 9.71e-11 | 58 |
respiratory epithelial cell | 2.77e-08 | 13 |
embryonic cell | 5.16e-08 | 250 |
columnar/cuboidal epithelial cell | 2.08e-07 | 27 |
gingival epithelial cell | 2.37e-07 | 3 |
retinal pigment epithelial cell | 6.33e-07 | 3 |