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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008167
|DRA_sample_Accession=CAGE@SAMD00005857
|accession_numbers=CAGE;DRX008275;DRR009147;DRZ000572;DRZ001957
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005857
|accession_numbers=CAGE;DRX008275;DRR009147;DRZ000572;DRZ001957;DRZ011922;DRZ013307
|accession_numbers_RNASeq=sRNA-Seq;DRX037044;DRR041410;DRZ007052
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!2.02!2932.78!HMGA1;;chr1:170632285..170632309,+!p1@PRRX1!1.87!82.70!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.83!170.41!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.76!75.82!PRRX1;;chr14:37131058..37131139,+!p1@PAX9!1.74!53.43!PAX9;;chr14:61116183..61116208,-!p1@SIX1!1.73!192.18!SIX1;;chr16:86544113..86544145,+!p1@FOXF1!1.68!57.18!FOXF1;;chr4:174451370..174451387,-!p1@HAND2!1.67!45.42!HAND2;;chr6:1389789..1389821,+!p1@FOXF2!1.60!52.30!FOXF2;;chr12:66218212..66218244,+!p5@HMGA2!1.57!52.05!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.55!154.65!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.51!51.55!TCF12;;chr12:66218183..66218209,+!p4@HMGA2!1.50!57.55!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.46!74.95!TWIST1;;chr4:4861385..4861398,+!p1@MSX1!1.40!70.44!MSX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.34!26.65!TFAP2C;;chr16:86600426..86600441,+!p1@FOXC2!1.32!48.92!FOXC2;;chr2:200322654..200322707,-!p2@SATB2!1.32!29.03!SATB2;;chr1:170633262..170633285,+!p3@PRRX1!1.29!20.89!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!1.26!17.27!PAX3;;chr17:59477233..59477263,+!p1@TBX2!1.24!49.67!TBX2;;chr12:115122318..115122331,-!p2@TBX3!1.24!16.52!TBX3;;chr2:239756671..239756732,+!p1@TWIST2!1.23!50.42!TWIST2;;chr2:45236540..45236577,-!p1@SIX2!1.21!15.26!SIX2;;chr14:37126765..37126799,+!p2@PAX9!1.20!15.01!PAX9;;chr11:65667884..65667895,-!p2@FOSL1!1.17!53.68!FOSL1;;chr10:28034739..28034756,-!p1@MKX!1.16!13.51!MKX;;chr9:96717629..96717644,-!p1@BARX1!1.15!13.26!BARX1;;chr2:102091566..102091581,-!p1@RFX8!1.15!13.14!RFX8;;chr12:66218573..66218596,+!p7@HMGA2!1.08!16.39!HMGA2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.07!11.51!GLIS1;;chr19:46801639..46801699,+!p1@HIF3A!1.07!10.64!HIF3A;;chr1:170632250..170632277,+!p7@PRRX1!1.06!10.51!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!1.06!10.51!SOX11;;chr20:42543441..42543497,+!p1@TOX2!1.05!46.17!TOX2;;chr1:170632477..170632506,+!p6@PRRX1!1.05!10.13!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.05!10.13!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.04!13.26!PRRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.02!16.14!TFAP2A;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.13!ALX1;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.26!BNC1;;chr6:1389824..1389840,+!p3@FOXF2!1.00!9.01!FOXF2;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.14!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.98!13.39!HMGA2;;chr14:61116168..61116180,-!p2@SIX1!0.98!9.76!SIX1;;chr12:66218420..66218439,+!p12@HMGA2!0.98!8.51!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.15!OSR1;;chr12:66218443..66218461,+!p8@HMGA2!0.97!10.89!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.95!13.64!CREB3L1;;chr17:41622765..41622821,-!p2@ETV4!0.95!12.14!ETV4;;chr12:115122303..115122314,-!p6@TBX3!0.95!8.01!TBX3;;chr1:170632439..170632465,+!p11@PRRX1!0.95!7.88!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.94!8.38!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.93!41.29!ETV1;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.28!DRAP1;;chr6:10415276..10415341,-!p2@TFAP2A!0.92!9.13!TFAP2A;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.26!HAND2;;chr4:299227..299272,-!p1@ZNF732!0.91!7.13!ZNF732;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.16!CREB3L1;;chr11:65667846..65667868,-!p1@FOSL1!0.89!188.30!FOSL1;;chr5:321810..321877,+!p1@AHRR!0.89!22.40!AHRR;;chr17:59477197..59477212,+!p2@TBX2!0.89!11.89!TBX2;;chr17:41623009..41623053,-!p4@ETV4!0.89!11.26!ETV4;;chr8:60031682..60031710,-!p2@TOX!0.89!11.14!TOX;;chr20:42543506..42543549,+!p2@TOX2!0.88!16.52!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.88!14.76!SATB2;;chr12:2986206..2986258,-!p2@FOXM1!0.87!41.16!FOXM1;;chr11:65686802..65686818,+!p6@DRAP1!0.86!11.14!DRAP1;;chr6:45296048..45296082,+!p1@RUNX2!0.86!7.26!RUNX2;;chr1:170632137..170632172,+!p10@PRRX1!0.86!6.26!PRRX1;;chr12:2986275..2986363,-!p1@FOXM1!0.85!65.44!FOXM1;;chr5:176738887..176738934,-!p1@MXD3!0.84!41.91!MXD3;;chr17:41623692..41623715,-!p1@ETV4!0.84!27.15!ETV4;;chr1:170632310..170632321,+!p15@PRRX1!0.84!5.88!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.88!PRRX1;;chr17:41277372..41277418,-!p1@BRCA1!0.83!22.40!BRCA1;;chr4:26322267..26322334,+!p3@RBPJ!0.83!14.51!RBPJ;;chr17:59477275..59477286,+!p3@TBX2!0.83!7.88!TBX2;;chr14:37126814..37126834,+!p4@PAX9!0.83!5.76!PAX9;;chr6:34204973..34204990,+!p4@HMGA1!0.82!80.08!HMGA1;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.63!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!0.81!8.63!PITX1;;chr9:77112244..77112262,+!p1@RORB!0.81!6.13!RORB;;chr6:34204672..34204692,+!p1@HMGA1!0.80!643.99!HMGA1;;chr8:60031619..60031676,-!p1@TOX!0.80!12.14!TOX;;chr7:96654133..96654150,-!p1@DLX5!0.80!5.38!DLX5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.80!5.38!RUNX1T1;;chr4:174451350..174451363,-!p3@HAND2!0.80!5.38!HAND2;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.89!TWIST1;;chr16:86600870..86600921,+!p2@FOXC2!0.79!5.13!FOXC2;;chr12:66218836..66218888,+!p1@HMGA2!0.78!51.42!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!0.78!5.00!TCF12;;chr7:44143925..44143970,+!p1@AEBP1!0.77!120.24!AEBP1;;chr12:115121962..115121987,-!p1@TBX3!0.77!44.92!TBX3;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.14!RUNX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.76!4.75!RUNX1T1;;chr7:14029312..14029325,-!p4@ETV1!0.75!5.88!ETV1;;chr12:85673868..85673881,+!p2@ALX1!0.75!4.63!ALX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.75!4.63!POU3F3;;chr2:121493425..121493474,+!p1@GLI2!0.74!10.51!GLI2;;chr17:17726907..17726958,-!p2@SREBF1!0.73!30.15!SREBF1;;chr9:102584262..102584276,+!p1@NR4A3!0.73!10.51!NR4A3;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.38!ETV4;;chr2:95963052..95963106,+!p1@KCNIP3!0.73!4.38!KCNIP3;;chr5:158526917..158526932,-!p1@EBF1!0.72!11.51!EBF1;;chr12:66218003..66218018,+!p9@HMGA2!0.72!5.38!HMGA2;;chr6:31126291..31126399,+!p1@TCF19!0.71!44.29!TCF19;;chr3:12329358..12329393,+!p3@PPARG!0.71!11.01!PPARG;;chr1:170632959..170632987,+!p4@PRRX1!0.71!4.63!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.71!4.13!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!0.70!20.64!FOXD1;;chr18:22932080..22932170,-!p1@ZNF521!0.70!19.14!ZNF521;;chr8:60031809..60031835,-!p4@TOX!0.70!5.25!TOX;;chr18:52969844..52969895,-!p27@TCF4!0.70!4.00!TCF4;;chr2:172949484..172949522,+!p1@DLX1!0.70!4.00!DLX1;;chr9:102584159..102584174,+!p2@NR4A3!0.69!7.51!NR4A3;;chr12:85674018..85674039,+!p3@ALX1!0.69!3.88!ALX1;;chr12:115121770..115121781,-!p4@TBX3!0.67!3.63!TBX3;;chr5:134369879..134369898,-!p2@PITX1!0.67!3.63!PITX1;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.52!MYBL2;;chrX:66763856..66763896,+!p1@AR!0.66!5.51!AR;;chr8:67525473..67525518,-!p1@MYBL1!0.65!8.76!MYBL1;;chr9:16870710..16870763,-!p1@BNC2!0.65!6.51!BNC2;;chrX:66763815..66763854,+!p2@AR!0.65!4.75!AR;;chr12:115122005..115122016,-!p3@TBX3!0.65!4.25!TBX3;;chr12:115122262..115122271,-!p7@TBX3!0.65!3.50!TBX3;;chr12:66357214..66357233,+!p13@HMGA2!0.65!3.50!HMGA2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.65!3.50!PEG3;;chr1:170632762..170632786,+!p13@PRRX1!0.65!3.50!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.50!RFX8;;chr2:45236579..45236596,-!p2@SIX2!0.65!3.50!SIX2;;chr2:96012397..96012417,+!p3@KCNIP3!0.65!3.50!KCNIP3;;chr12:96588143..96588185,+!p1@ELK3!0.64!48.30!ELK3;;chr11:113930291..113930339,+!p2@ZBTB16!0.64!6.01!ZBTB16;;chr7:14028488..14028516,-!p2@ETV1!0.64!3.75!ETV1;;chr8:25902876..25902936,-!p1@EBF2!0.64!3.38!EBF2;;chr12:66218469..66218477,+!p16@HMGA2!0.64!3.38!HMGA2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.63!17.14!TAL1;;chr4:26322419..26322479,+!p2@RBPJ!0.62!46.04!RBPJ;;chr6:85474299..85474324,-!p1@TBX18!0.62!6.26!TBX18;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.13!PRRX1;;chr14:55493763..55493824,-!p1@WDHD1!0.61!27.40!WDHD1;;chr20:31350184..31350200,+!p1@DNMT3B!0.61!7.26!DNMT3B;;chr19:13134772..13134822,+!p2@NFIX!0.61!4.88!NFIX;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.88!ETV4;;chr16:86600458..86600461,+!p3@FOXC2!0.60!3.00!FOXC2;;chr16:86612320..86612394,+!p1@FOXL1!0.60!3.00!FOXL1;;chr8:60031840..60031869,-!p5@TOX!0.60!3.00!TOX;;chr20:55205825..55205847,+!p2@TFAP2C!0.60!3.00!TFAP2C;;chr11:44331576..44331650,-!p1@ALX4!0.60!3.00!ALX4;;chr7:42276787..42276815,-!p1@GLI3!0.59!8.88!GLI3;;chr1:75600067..75600094,+!p2@LHX8!0.59!2.88!LHX8;;chr8:49833978..49833996,-!p1@SNAI2!0.58!70.44!SNAI2;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.01!ZFHX4;;chr8:60031762..60031803,-!p3@TOX!0.58!4.38!TOX;;chr6:20402102..20402152,+!p1@E2F3!0.57!13.26!E2F3;;chr5:150284532..150284549,-!p1@ZNF300!0.57!6.51!ZNF300;;chr1:247171347..247171366,-!p2@ZNF695!0.57!5.63!ZNF695;;chr1:110613276..110613299,-!p2@ALX3!0.57!2.75!ALX3;;chr1:75602043..75602093,+!p1@LHX8!0.57!2.75!LHX8;;chr18:52969674..52969685,-!p24@TCF4!0.57!2.75!TCF4;;chr8:116673894..116673913,-!p12@TRPS1!0.57!2.75!TRPS1;;chr7:42276822..42276895,-!p2@GLI3!0.56!9.38!GLI3;;chr1:61547894..61547968,+!p2@NFIA!0.56!9.01!NFIA;;chr3:157823517..157823562,-!p1@SHOX2!0.56!2.88!SHOX2;;chr2:5832493..5832507,+!p2@SOX11!0.56!2.63!SOX11;;chr19:57352109..57352153,-!p2@ZIM2!0.56!2.63!ZIM2;;chr20:42602000..42602034,+!p5@TOX2!0.56!2.63!TOX2;;chr6:1389871..1389876,+!p4@FOXF2!0.56!2.63!FOXF2;;chr7:96654026..96654061,-!p2@DLX5!0.56!2.63!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.56!2.63!TOX;;chr4:1873100..1873152,+!p1@WHSC1!0.55!24.15!WHSC1;;chr21:47063625..47063658,+!p1@PCBP3!0.55!13.76!PCBP3;;chr7:44143978..44143989,+!p2@AEBP1!0.55!5.25!AEBP1;;chr6:45390002..45390023,+!p6@RUNX2!0.55!4.88!RUNX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.55!4.25!ZBTB38;;chr19:10305581..10305646,-!p1@DNMT1!0.54!109.60!DNMT1;;chr6:35464817..35464894,-!p1@TEAD3!0.54!47.92!TEAD3;;chr19:23433144..23433204,-!p1@ZNF724P!0.54!13.51!ZNF724P;;chr5:178368186..178368238,+!p1@ZNF454!0.54!5.00!ZNF454;;chr5:72744445..72744466,-!p2@FOXD1!0.54!4.63!FOXD1;;chr17:41622834..41622883,-!p6@ETV4!0.54!3.13!ETV4;;chr1:170632051..170632081,+!p16@PRRX1!0.54!2.50!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.50!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.54!2.50!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.54!2.50!DLX1;;chr19:3366570..3366619,+!p1@NFIC!0.53!98.09!NFIC;;chr7:148581360..148581425,-!p1@EZ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|expression_enrichment_score=chr6:34204921..34204939,+!p3@HMGA1!2.02!2932.78!HMGA1;;chr1:170632285..170632309,+!p1@PRRX1!1.87!82.70!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.83!170.41!HMGA2;;chr1:170633348..170633399,+!p2@PRRX1!1.76!75.82!PRRX1;;chr14:37131058..37131139,+!p1@PAX9!1.74!53.43!PAX9;;chr14:61116183..61116208,-!p1@SIX1!1.73!192.18!SIX1;;chr16:86544113..86544145,+!p1@FOXF1!1.68!57.18!FOXF1;;chr4:174451370..174451387,-!p1@HAND2!1.67!45.42!HAND2;;chr6:1389789..1389821,+!p1@FOXF2!1.60!52.30!FOXF2;;chr12:66218212..66218244,+!p5@HMGA2!1.57!52.05!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!1.55!154.65!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.51!51.55!TCF12;;chr12:66218183..66218209,+!p4@HMGA2!1.50!57.55!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!1.46!74.95!TWIST1;;chr4:4861385..4861398,+!p1@MSX1!1.40!70.44!MSX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.34!26.65!TFAP2C;;chr16:86600426..86600441,+!p1@FOXC2!1.32!48.92!FOXC2;;chr2:200322654..200322707,-!p2@SATB2!1.32!29.03!SATB2;;chr1:170633262..170633285,+!p3@PRRX1!1.29!20.89!PRRX1;;chr2:223163706..223163730,-!p1@PAX3!1.26!17.27!PAX3;;chr17:59477233..59477263,+!p1@TBX2!1.24!49.67!TBX2;;chr12:115122318..115122331,-!p2@TBX3!1.24!16.52!TBX3;;chr2:239756671..239756732,+!p1@TWIST2!1.23!50.42!TWIST2;;chr2:45236540..45236577,-!p1@SIX2!1.21!15.26!SIX2;;chr14:37126765..37126799,+!p2@PAX9!1.20!15.01!PAX9;;chr11:65667884..65667895,-!p2@FOSL1!1.17!53.68!FOSL1;;chr10:28034739..28034756,-!p1@MKX!1.16!13.51!MKX;;chr9:96717629..96717644,-!p1@BARX1!1.15!13.26!BARX1;;chr2:102091566..102091581,-!p1@RFX8!1.15!13.14!RFX8;;chr12:66218573..66218596,+!p7@HMGA2!1.08!16.39!HMGA2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.07!11.51!GLIS1;;chr19:46801639..46801699,+!p1@HIF3A!1.07!10.64!HIF3A;;chr1:170632250..170632277,+!p7@PRRX1!1.06!10.51!PRRX1;;chr2:5832508..5832524,+!p1@SOX11!1.06!10.51!SOX11;;chr20:42543441..42543497,+!p1@TOX2!1.05!46.17!TOX2;;chr1:170632477..170632506,+!p6@PRRX1!1.05!10.13!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.05!10.13!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.04!13.26!PRRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.02!16.14!TFAP2A;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.13!ALX1;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.26!BNC1;;chr6:1389824..1389840,+!p3@FOXF2!1.00!9.01!FOXF2;;chr2:239756739..239756755,+!p2@TWIST2!0.99!15.14!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.98!13.39!HMGA2;;chr14:61116168..61116180,-!p2@SIX1!0.98!9.76!SIX1;;chr12:66218420..66218439,+!p12@HMGA2!0.98!8.51!HMGA2;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.15!OSR1;;chr12:66218443..66218461,+!p8@HMGA2!0.97!10.89!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.95!13.64!CREB3L1;;chr17:41622765..41622821,-!p2@ETV4!0.95!12.14!ETV4;;chr12:115122303..115122314,-!p6@TBX3!0.95!8.01!TBX3;;chr1:170632439..170632465,+!p11@PRRX1!0.95!7.88!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!0.94!8.38!HMGA2;;chr7:14029283..14029311,-!p1@ETV1!0.93!41.29!ETV1;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.28!DRAP1;;chr6:10415276..10415341,-!p2@TFAP2A!0.92!9.13!TFAP2A;;chr4:174450089..174450153,-!p2@HAND2!0.92!7.26!HAND2;;chr4:299227..299272,-!p1@ZNF732!0.91!7.13!ZNF732;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.16!CREB3L1;;chr11:65667846..65667868,-!p1@FOSL1!0.89!188.30!FOSL1;;chr5:321810..321877,+!p1@AHRR!0.89!22.40!AHRR;;chr17:59477197..59477212,+!p2@TBX2!0.89!11.89!TBX2;;chr17:41623009..41623053,-!p4@ETV4!0.89!11.26!ETV4;;chr8:60031682..60031710,-!p2@TOX!0.89!11.14!TOX;;chr20:42543506..42543549,+!p2@TOX2!0.88!16.52!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.88!14.76!SATB2;;chr12:2986206..2986258,-!p2@FOXM1!0.87!41.16!FOXM1;;chr11:65686802..65686818,+!p6@DRAP1!0.86!11.14!DRAP1;;chr6:45296048..45296082,+!p1@RUNX2!0.86!7.26!RUNX2;;chr1:170632137..170632172,+!p10@PRRX1!0.86!6.26!PRRX1;;chr12:2986275..2986363,-!p1@FOXM1!0.85!65.44!FOXM1;;chr5:176738887..176738934,-!p1@MXD3!0.84!41.91!MXD3;;chr17:41623692..41623715,-!p1@ETV4!0.84!27.15!ETV4;;chr1:170632310..170632321,+!p15@PRRX1!0.84!5.88!PRRX1;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.88!PRRX1;;chr17:41277372..41277418,-!p1@BRCA1!0.83!22.40!BRCA1;;chr4:26322267..26322334,+!p3@RBPJ!0.83!14.51!RBPJ;;chr17:59477275..59477286,+!p3@TBX2!0.83!7.88!TBX2;;chr14:37126814..37126834,+!p4@PAX9!0.83!5.76!PAX9;;chr6:34204973..34204990,+!p4@HMGA1!0.82!80.08!HMGA1;;chr1:170632115..170632136,+!p9@PRRX1!0.82!5.63!PRRX1;;chr5:134369905..134369972,-!p1@PITX1!0.81!8.63!PITX1;;chr9:77112244..77112262,+!p1@RORB!0.81!6.13!RORB;;chr6:34204672..34204692,+!p1@HMGA1!0.80!643.99!HMGA1;;chr8:60031619..60031676,-!p1@TOX!0.80!12.14!TOX;;chr7:96654133..96654150,-!p1@DLX5!0.80!5.38!DLX5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.80!5.38!RUNX1T1;;chr4:174451350..174451363,-!p3@HAND2!0.80!5.38!HAND2;;chr7:19157043..19157088,-!p2@TWIST1!0.79!13.89!TWIST1;;chr16:86600870..86600921,+!p2@FOXC2!0.79!5.13!FOXC2;;chr12:66218836..66218888,+!p1@HMGA2!0.78!51.42!HMGA2;;chr15:57511589..57511608,+!p4@TCF12!0.78!5.00!TCF12;;chr7:44143925..44143970,+!p1@AEBP1!0.77!120.24!AEBP1;;chr12:115121962..115121987,-!p1@TBX3!0.77!44.92!TBX3;;chr6:45390025..45390076,+!p2@RUNX2!0.76!12.14!RUNX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.76!4.75!RUNX1T1;;chr7:14029312..14029325,-!p4@ETV1!0.75!5.88!ETV1;;chr12:85673868..85673881,+!p2@ALX1!0.75!4.63!ALX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.75!4.63!POU3F3;;chr2:121493425..121493474,+!p1@GLI2!0.74!10.51!GLI2;;chr17:17726907..17726958,-!p2@SREBF1!0.73!30.15!SREBF1;;chr9:102584262..102584276,+!p1@NR4A3!0.73!10.51!NR4A3;;chr17:41622731..41622764,-!p5@ETV4!0.73!4.38!ETV4;;chr2:95963052..95963106,+!p1@KCNIP3!0.73!4.38!KCNIP3;;chr5:158526917..158526932,-!p1@EBF1!0.72!11.51!EBF1;;chr12:66218003..66218018,+!p9@HMGA2!0.72!5.38!HMGA2;;chr6:31126291..31126399,+!p1@TCF19!0.71!44.29!TCF19;;chr3:12329358..12329393,+!p3@PPARG!0.71!11.01!PPARG;;chr1:170632959..170632987,+!p4@PRRX1!0.71!4.63!PRRX1;;chr12:66358080..66358094,+!p15@HMGA2!0.71!4.13!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!0.70!20.64!FOXD1;;chr18:22932080..22932170,-!p1@ZNF521!0.70!19.14!ZNF521;;chr8:60031809..60031835,-!p4@TOX!0.70!5.25!TOX;;chr18:52969844..52969895,-!p27@TCF4!0.70!4.00!TCF4;;chr2:172949484..172949522,+!p1@DLX1!0.70!4.00!DLX1;;chr9:102584159..102584174,+!p2@NR4A3!0.69!7.51!NR4A3;;chr12:85674018..85674039,+!p3@ALX1!0.69!3.88!ALX1;;chr12:115121770..115121781,-!p4@TBX3!0.67!3.63!TBX3;;chr5:134369879..134369898,-!p2@PITX1!0.67!3.63!PITX1;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.52!MYBL2;;chrX:66763856..66763896,+!p1@AR!0.66!5.51!AR;;chr8:67525473..67525518,-!p1@MYBL1!0.65!8.76!MYBL1;;chr9:16870710..16870763,-!p1@BNC2!0.65!6.51!BNC2;;chrX:66763815..66763854,+!p2@AR!0.65!4.75!AR;;chr12:115122005..115122016,-!p3@TBX3!0.65!4.25!TBX3;;chr12:115122262..115122271,-!p7@TBX3!0.65!3.50!TBX3;;chr12:66357214..66357233,+!p13@HMGA2!0.65!3.50!HMGA2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.65!3.50!PEG3;;chr1:170632762..170632786,+!p13@PRRX1!0.65!3.50!PRRX1;;chr2:102091144..102091183,-!p2@RFX8!0.65!3.50!RFX8;;chr2:45236579..45236596,-!p2@SIX2!0.65!3.50!SIX2;;chr2:96012397..96012417,+!p3@KCNIP3!0.65!3.50!KCNIP3;;chr12:96588143..96588185,+!p1@ELK3!0.64!48.30!ELK3;;chr11:113930291..113930339,+!p2@ZBTB16!0.64!6.01!ZBTB16;;chr7:14028488..14028516,-!p2@ETV1!0.64!3.75!ETV1;;chr8:25902876..25902936,-!p1@EBF2!0.64!3.38!EBF2;;chr12:66218469..66218477,+!p16@HMGA2!0.64!3.38!HMGA2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.63!17.14!TAL1;;chr4:26322419..26322479,+!p2@RBPJ!0.62!46.04!RBPJ;;chr6:85474299..85474324,-!p1@TBX18!0.62!6.26!TBX18;;chr1:170633245..170633256,+!p14@PRRX1!0.62!3.13!PRRX1;;chr14:55493763..55493824,-!p1@WDHD1!0.61!27.40!WDHD1;;chr20:31350184..31350200,+!p1@DNMT3B!0.61!7.26!DNMT3B;;chr19:13134772..13134822,+!p2@NFIX!0.61!4.88!NFIX;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.88!ETV4;;chr16:86600458..86600461,+!p3@FOXC2!0.60!3.00!FOXC2;;chr16:86612320..86612394,+!p1@FOXL1!0.60!3.00!FOXL1;;chr8:60031840..60031869,-!p5@TOX!0.60!3.00!TOX;;chr20:55205825..55205847,+!p2@TFAP2C!0.60!3.00!TFAP2C;;chr11:44331576..44331650,-!p1@ALX4!0.60!3.00!ALX4;;chr7:42276787..42276815,-!p1@GLI3!0.59!8.88!GLI3;;chr1:75600067..75600094,+!p2@LHX8!0.59!2.88!LHX8;;chr8:49833978..49833996,-!p1@SNAI2!0.58!70.44!SNAI2;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.01!ZFHX4;;chr8:60031762..60031803,-!p3@TOX!0.58!4.38!TOX;;chr6:20402102..20402152,+!p1@E2F3!0.57!13.26!E2F3;;chr5:150284532..150284549,-!p1@ZNF300!0.57!6.51!ZNF300;;chr1:247171347..247171366,-!p2@ZNF695!0.57!5.63!ZNF695;;chr1:110613276..110613299,-!p2@ALX3!0.57!2.75!ALX3;;chr1:75602043..75602093,+!p1@LHX8!0.57!2.75!LHX8;;chr18:52969674..52969685,-!p24@TCF4!0.57!2.75!TCF4;;chr8:116673894..116673913,-!p12@TRPS1!0.57!2.75!TRPS1;;chr7:42276822..42276895,-!p2@GLI3!0.56!9.38!GLI3;;chr1:61547894..61547968,+!p2@NFIA!0.56!9.01!NFIA;;chr3:157823517..157823562,-!p1@SHOX2!0.56!2.88!SHOX2;;chr2:5832493..5832507,+!p2@SOX11!0.56!2.63!SOX11;;chr19:57352109..57352153,-!p2@ZIM2!0.56!2.63!ZIM2;;chr20:42602000..42602034,+!p5@TOX2!0.56!2.63!TOX2;;chr6:1389871..1389876,+!p4@FOXF2!0.56!2.63!FOXF2;;chr7:96654026..96654061,-!p2@DLX5!0.56!2.63!DLX5;;chr8:60031934..60031986,-!p6@TOX!0.56!2.63!TOX;;chr4:1873100..1873152,+!p1@WHSC1!0.55!24.15!WHSC1;;chr21:47063625..47063658,+!p1@PCBP3!0.55!13.76!PCBP3;;chr7:44143978..44143989,+!p2@AEBP1!0.55!5.25!AEBP1;;chr6:45390002..45390023,+!p6@RUNX2!0.55!4.88!RUNX2;;chr3:141121847..141121868,+!p5@ZBTB38!0.55!4.25!ZBTB38;;chr19:10305581..10305646,-!p1@DNMT1!0.54!109.60!DNMT1;;chr6:35464817..35464894,-!p1@TEAD3!0.54!47.92!TEAD3;;chr19:23433144..23433204,-!p1@ZNF724P!0.54!13.51!ZNF724P;;chr5:178368186..178368238,+!p1@ZNF454!0.54!5.00!ZNF454;;chr5:72744445..72744466,-!p2@FOXD1!0.54!4.63!FOXD1;;chr17:41622834..41622883,-!p6@ETV4!0.54!3.13!ETV4;;chr1:170632051..170632081,+!p16@PRRX1!0.54!2.50!PRRX1;;chr1:170632647..170632659,+!p17@PRRX1!0.54!2.50!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.54!2.50!PRRX1;;chr2:172950227..172950249,+!p2@DLX1!0.54!2.50!DLX1;;chr19:3366570..3366619,+!p1@NFIC!0.53!98.09!NFIC;;chr7:148581360..148581425,-!p1@EZ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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 40: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor2.CNhs11962.11319-117D5.hg38.nobarcode.ctss.bed.gz
|id=FF:11319-117D5
|id=FF:11319-117D5
|is_a=EFO:0002091;;FF:0000067
|is_a=EFO:0002091;;FF:0000067
|is_obsolete=
|is_obsolete=
|library_id=CNhs11962
|library_id=CNhs11962
|library_ids=CNhs11962
|library_id_phase_based=2:CNhs11962
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11319
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.AGTTCC.11319
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11319
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.AGTTCC.11319
|name=Fibroblast - Periodontal Ligament, donor2
|name=Fibroblast - Periodontal Ligament, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 50: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11962,LSID836,release011,COMPLETED
|profile_hcage=CNhs11962,LSID836,release011,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10004,,,
|profile_srnaseq=SRhi10004,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 89: Line 106:
|top_motifs=TFDP1:1.77608075549;TOPORS:1.5157380392;GFI1:1.41981338001;E2F1..5:1.38507585312;ALX4:1.30409372567;NFY{A,B,C}:1.19689032998;PAX8:1.10197064252;NKX2-2,8:1.06818837438;ZIC1..3:1.05663375165;AIRE:1.03664935076;MYB:0.940038947204;PDX1:0.896639836915;ZNF238:0.835869823999;EN1,2:0.813507164028;FOXD3:0.784660858093;PAX4:0.780982418356;ZNF143:0.773597665991;POU3F1..4:0.734778716458;NR3C1:0.689437289074;NR1H4:0.685048612429;RXR{A,B,G}:0.674166432679;MZF1:0.674070411014;TFAP4:0.659771997513;GZF1:0.654395106532;NRF1:0.609006644214;NKX3-1:0.589446480472;NKX6-1,2:0.586051214085;UFEwm:0.584271398741;TFAP2{A,C}:0.580765347849;SOX17:0.566055678021;GTF2A1,2:0.565399501245;TEF:0.561764581093;XCPE1{core}:0.536162849451;YY1:0.498458294043;PBX1:0.475165924939;NFIX:0.472684371182;PRDM1:0.456517521373;PATZ1:0.452862521748;STAT1,3:0.45108629787;KLF4:0.450813542539;LHX3,4:0.447866395575;PITX1..3:0.430902097822;CDC5L:0.429746482877;FOXQ1:0.416958907747;GTF2I:0.388710716893;NANOG{mouse}:0.384970119093;TEAD1:0.382977118054;T:0.379972363452;PAX5:0.366881258706;HOX{A5,B5}:0.359663430167;MYBL2:0.342013615666;EVI1:0.341275102878;ONECUT1,2:0.338174684377;POU1F1:0.323476519291;GATA4:0.294603130971;TLX1..3_NFIC{dimer}:0.288451684838;ZFP161:0.288219853334;STAT5{A,B}:0.282762352356;GFI1B:0.274212868033;SPZ1:0.27051411934;HES1:0.250506562088;HIC1:0.245572163924;SP1:0.240246053833;AR:0.24003013512;TAL1_TCF{3,4,12}:0.238799409708;HOXA9_MEIS1:0.218811653935;EGR1..3:0.207643247877;BACH2:0.204207723058;EBF1:0.193693998299;ELK1,4_GABP{A,B1}:0.188398737144;POU2F1..3:0.187951377141;NKX2-3_NKX2-5:0.185168963761;MAZ:0.178286114592;NFATC1..3:0.177557330584;HAND1,2:0.147702237517;ESR1:0.13852905237;BREu{core}:0.124126603485;FOXP1:0.118216560581;TGIF1:0.109131452639;PAX3,7:0.093047757221;PAX1,9:0.0806177618024;NKX2-1,4:0.0708106432331;SOX{8,9,10}:0.0687871662136;XBP1:0.0652266615512;FOS_FOS{B,L1}_JUN{B,D}:0.0487965446664;TFAP2B:0.0399755841136;ALX1:0.0392571477971;LEF1_TCF7_TCF7L1,2:0.0383536469336;NFE2L2:0.0238017505965;HOX{A4,D4}:0.00904317530301;MED-1{core}:-0.00635047676443;GLI1..3:-0.0129053319401;ARID5B:-0.0175139857031;AHR_ARNT_ARNT2:-0.0246341969589;MTE{core}:-0.0343150873806;TFCP2:-0.0388114520502;ZBTB6:-0.0399332653266;FOSL2:-0.0446808294881;FOXO1,3,4:-0.0463512349008;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0515639501902;CDX1,2,4:-0.0657409790052;HNF4A_NR2F1,2:-0.0744354596697;HBP1_HMGB_SSRP1_UBTF:-0.0770511407049;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0835674141001;ZBTB16:-0.092693768617;ZNF423:-0.102373291133;RREB1:-0.115037652108;PPARG:-0.115480814009;NANOG:-0.118570424581;SOX5:-0.128641552888;HNF1A:-0.135871118979;TBX4,5:-0.137656041224;HLF:-0.145071020217;TP53:-0.148920931047;HSF1,2:-0.150495567618;SRF:-0.164130605494;PRRX1,2:-0.181715313192;RFX1:-0.191944352592;FOXM1:-0.192135110391;FOX{F1,F2,J1}:-0.198194760499;PAX6:-0.202333116193;RBPJ:-0.205315151969;CREB1:-0.210246295081;NFE2:-0.217381266054;CEBPA,B_DDIT3:-0.221497331343;MYFfamily:-0.225665797196;IKZF1:-0.23033348362;FOX{I1,J2}:-0.233980278854;ELF1,2,4:-0.239541446654;SOX2:-0.241544272033;POU5F1:-0.242196026373;RFX2..5_RFXANK_RFXAP:-0.262753929438;CUX2:-0.279151290554;ATF6:-0.303718471653;MTF1:-0.310945320008;GCM1,2:-0.312101432126;RUNX1..3:-0.338533671741;NR5A1,2:-0.342927348395;FOXA2:-0.35597178131;MEF2{A,B,C,D}:-0.359333899071;JUN:-0.38025012207;CRX:-0.384373948403;NR6A1:-0.388512084801;BPTF:-0.401907101427;NHLH1,2:-0.402306927959;ZNF148:-0.415993138762;ESRRA:-0.418413299441;GATA6:-0.451711349412;SPI1:-0.454715260926;NFKB1_REL_RELA:-0.455976694334;FOXN1:-0.460356831491;FOXP3:-0.464919514116;bHLH_family:-0.467469997646;HMGA1,2:-0.471044716553;DMAP1_NCOR{1,2}_SMARC:-0.473843951591;IRF7:-0.481256507876;TBP:-0.491013577399;SPIB:-0.497423801917;REST:-0.524439931518;HOX{A6,A7,B6,B7}:-0.525802877125;ZNF384:-0.534192057309;OCT4_SOX2{dimer}:-0.560032222845;RXRA_VDR{dimer}:-0.564616993872;IRF1,2:-0.572685666181;NFIL3:-0.578035162301;NFE2L1:-0.584262184237;ATF4:-0.584307312929;ATF5_CREB3:-0.589534368542;IKZF2:-0.591236481849;ADNP_IRX_SIX_ZHX:-0.596571589128;ETS1,2:-0.60258327953;SMAD1..7,9:-0.620914226317;SNAI1..3:-0.638285973988;HMX1:-0.673832017309;RORA:-0.765943825669;VSX1,2:-0.77049651252;MYOD1:-0.776196937529;NKX3-2:-0.785853404734;MAFB:-0.788009169757;POU6F1:-0.789966318911;STAT2,4,6:-0.8206483194;EP300:-0.86795885305;PAX2:-0.884372527909;FOXL1:-0.8855241496;ZEB1:-0.942101661359;ATF2:-0.949280287919;LMO2:-0.952669480575;HIF1A:-0.974516251619;FOX{D1,D2}:-0.990594345423;SREBF1,2:-1.00036881172;DBP:-1.03247887502;TLX2:-1.36610531701
|top_motifs=TFDP1:1.77608075549;TOPORS:1.5157380392;GFI1:1.41981338001;E2F1..5:1.38507585312;ALX4:1.30409372567;NFY{A,B,C}:1.19689032998;PAX8:1.10197064252;NKX2-2,8:1.06818837438;ZIC1..3:1.05663375165;AIRE:1.03664935076;MYB:0.940038947204;PDX1:0.896639836915;ZNF238:0.835869823999;EN1,2:0.813507164028;FOXD3:0.784660858093;PAX4:0.780982418356;ZNF143:0.773597665991;POU3F1..4:0.734778716458;NR3C1:0.689437289074;NR1H4:0.685048612429;RXR{A,B,G}:0.674166432679;MZF1:0.674070411014;TFAP4:0.659771997513;GZF1:0.654395106532;NRF1:0.609006644214;NKX3-1:0.589446480472;NKX6-1,2:0.586051214085;UFEwm:0.584271398741;TFAP2{A,C}:0.580765347849;SOX17:0.566055678021;GTF2A1,2:0.565399501245;TEF:0.561764581093;XCPE1{core}:0.536162849451;YY1:0.498458294043;PBX1:0.475165924939;NFIX:0.472684371182;PRDM1:0.456517521373;PATZ1:0.452862521748;STAT1,3:0.45108629787;KLF4:0.450813542539;LHX3,4:0.447866395575;PITX1..3:0.430902097822;CDC5L:0.429746482877;FOXQ1:0.416958907747;GTF2I:0.388710716893;NANOG{mouse}:0.384970119093;TEAD1:0.382977118054;T:0.379972363452;PAX5:0.366881258706;HOX{A5,B5}:0.359663430167;MYBL2:0.342013615666;EVI1:0.341275102878;ONECUT1,2:0.338174684377;POU1F1:0.323476519291;GATA4:0.294603130971;TLX1..3_NFIC{dimer}:0.288451684838;ZFP161:0.288219853334;STAT5{A,B}:0.282762352356;GFI1B:0.274212868033;SPZ1:0.27051411934;HES1:0.250506562088;HIC1:0.245572163924;SP1:0.240246053833;AR:0.24003013512;TAL1_TCF{3,4,12}:0.238799409708;HOXA9_MEIS1:0.218811653935;EGR1..3:0.207643247877;BACH2:0.204207723058;EBF1:0.193693998299;ELK1,4_GABP{A,B1}:0.188398737144;POU2F1..3:0.187951377141;NKX2-3_NKX2-5:0.185168963761;MAZ:0.178286114592;NFATC1..3:0.177557330584;HAND1,2:0.147702237517;ESR1:0.13852905237;BREu{core}:0.124126603485;FOXP1:0.118216560581;TGIF1:0.109131452639;PAX3,7:0.093047757221;PAX1,9:0.0806177618024;NKX2-1,4:0.0708106432331;SOX{8,9,10}:0.0687871662136;XBP1:0.0652266615512;FOS_FOS{B,L1}_JUN{B,D}:0.0487965446664;TFAP2B:0.0399755841136;ALX1:0.0392571477971;LEF1_TCF7_TCF7L1,2:0.0383536469336;NFE2L2:0.0238017505965;HOX{A4,D4}:0.00904317530301;MED-1{core}:-0.00635047676443;GLI1..3:-0.0129053319401;ARID5B:-0.0175139857031;AHR_ARNT_ARNT2:-0.0246341969589;MTE{core}:-0.0343150873806;TFCP2:-0.0388114520502;ZBTB6:-0.0399332653266;FOSL2:-0.0446808294881;FOXO1,3,4:-0.0463512349008;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0515639501902;CDX1,2,4:-0.0657409790052;HNF4A_NR2F1,2:-0.0744354596697;HBP1_HMGB_SSRP1_UBTF:-0.0770511407049;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0835674141001;ZBTB16:-0.092693768617;ZNF423:-0.102373291133;RREB1:-0.115037652108;PPARG:-0.115480814009;NANOG:-0.118570424581;SOX5:-0.128641552888;HNF1A:-0.135871118979;TBX4,5:-0.137656041224;HLF:-0.145071020217;TP53:-0.148920931047;HSF1,2:-0.150495567618;SRF:-0.164130605494;PRRX1,2:-0.181715313192;RFX1:-0.191944352592;FOXM1:-0.192135110391;FOX{F1,F2,J1}:-0.198194760499;PAX6:-0.202333116193;RBPJ:-0.205315151969;CREB1:-0.210246295081;NFE2:-0.217381266054;CEBPA,B_DDIT3:-0.221497331343;MYFfamily:-0.225665797196;IKZF1:-0.23033348362;FOX{I1,J2}:-0.233980278854;ELF1,2,4:-0.239541446654;SOX2:-0.241544272033;POU5F1:-0.242196026373;RFX2..5_RFXANK_RFXAP:-0.262753929438;CUX2:-0.279151290554;ATF6:-0.303718471653;MTF1:-0.310945320008;GCM1,2:-0.312101432126;RUNX1..3:-0.338533671741;NR5A1,2:-0.342927348395;FOXA2:-0.35597178131;MEF2{A,B,C,D}:-0.359333899071;JUN:-0.38025012207;CRX:-0.384373948403;NR6A1:-0.388512084801;BPTF:-0.401907101427;NHLH1,2:-0.402306927959;ZNF148:-0.415993138762;ESRRA:-0.418413299441;GATA6:-0.451711349412;SPI1:-0.454715260926;NFKB1_REL_RELA:-0.455976694334;FOXN1:-0.460356831491;FOXP3:-0.464919514116;bHLH_family:-0.467469997646;HMGA1,2:-0.471044716553;DMAP1_NCOR{1,2}_SMARC:-0.473843951591;IRF7:-0.481256507876;TBP:-0.491013577399;SPIB:-0.497423801917;REST:-0.524439931518;HOX{A6,A7,B6,B7}:-0.525802877125;ZNF384:-0.534192057309;OCT4_SOX2{dimer}:-0.560032222845;RXRA_VDR{dimer}:-0.564616993872;IRF1,2:-0.572685666181;NFIL3:-0.578035162301;NFE2L1:-0.584262184237;ATF4:-0.584307312929;ATF5_CREB3:-0.589534368542;IKZF2:-0.591236481849;ADNP_IRX_SIX_ZHX:-0.596571589128;ETS1,2:-0.60258327953;SMAD1..7,9:-0.620914226317;SNAI1..3:-0.638285973988;HMX1:-0.673832017309;RORA:-0.765943825669;VSX1,2:-0.77049651252;MYOD1:-0.776196937529;NKX3-2:-0.785853404734;MAFB:-0.788009169757;POU6F1:-0.789966318911;STAT2,4,6:-0.8206483194;EP300:-0.86795885305;PAX2:-0.884372527909;FOXL1:-0.8855241496;ZEB1:-0.942101661359;ATF2:-0.949280287919;LMO2:-0.952669480575;HIF1A:-0.974516251619;FOX{D1,D2}:-0.990594345423;SREBF1,2:-1.00036881172;DBP:-1.03247887502;TLX2:-1.36610531701
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11319-117D5;search_select_hide=table117:FF:11319-117D5
}}
}}

Latest revision as of 16:33, 3 June 2020

Name:Fibroblast - Periodontal Ligament, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11962
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueperiodontal ligament
dev stagefetus
sexunknown
agefetal
cell typefibroblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1847
catalog numberSC2635
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005857
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11962 CAGE DRX008275 DRR009147
Accession ID Hg19

Library idBAMCTSS
CNhs11962 DRZ000572 DRZ001957
Accession ID Hg38

Library idBAMCTSS
CNhs11962 DRZ011922 DRZ013307
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005857
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.AGTTCC sRNA-Seq DRX037044 DRR041410
Accession ID Hg19

Library idBAMCTSS
SRhi10004.AGTTCC DRZ007052


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0438
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.638
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0512
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.016
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0536
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0435
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0512
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.301
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.12
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0715
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.633
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0149
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0512
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.589
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.166
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0512
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.097
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0512
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.138
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.176
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.301
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11962

Jaspar motifP-value
MA0002.20.00463
MA0003.10.0837
MA0004.10.351
MA0006.10.951
MA0007.10.989
MA0009.10.373
MA0014.10.621
MA0017.10.0136
MA0018.20.0804
MA0019.10.251
MA0024.12.45503e-10
MA0025.10.0158
MA0027.10.647
MA0028.10.184
MA0029.10.416
MA0030.10.431
MA0031.10.148
MA0035.20.0134
MA0038.12.69393e-4
MA0039.20.95
MA0040.10.521
MA0041.10.24
MA0042.10.541
MA0043.10.00978
MA0046.10.891
MA0047.20.534
MA0048.16.31088e-4
MA0050.12.72588e-5
MA0051.13.95241e-4
MA0052.10.626
MA0055.10.0107
MA0057.10.906
MA0058.10.147
MA0059.10.259
MA0060.18.12898e-13
MA0061.12.21921e-4
MA0062.20.39
MA0065.20.0116
MA0066.10.623
MA0067.10.0229
MA0068.10.138
MA0069.10.267
MA0070.10.197
MA0071.10.738
MA0072.10.737
MA0073.10.493
MA0074.10.77
MA0076.10.253
MA0077.10.526
MA0078.10.867
MA0079.20.723
MA0080.21.36476e-12
MA0081.10.0812
MA0083.10.24
MA0084.10.0465
MA0087.10.984
MA0088.10.0533
MA0090.10.589
MA0091.10.427
MA0092.10.111
MA0093.10.34
MA0099.20.102
MA0100.10.0706
MA0101.10.0114
MA0102.20.00747
MA0103.17.40948e-4
MA0104.20.567
MA0105.16.66588e-5
MA0106.10.875
MA0107.12.92615e-4
MA0108.20.163
MA0111.10.732
MA0112.20.00103
MA0113.10.71
MA0114.10.0571
MA0115.10.905
MA0116.10.00808
MA0117.10.445
MA0119.10.957
MA0122.10.377
MA0124.10.435
MA0125.10.37
MA0131.10.363
MA0135.10.358
MA0136.13.20723e-11
MA0137.20.21
MA0138.20.382
MA0139.10.156
MA0140.10.247
MA0141.10.501
MA0142.10.42
MA0143.10.301
MA0144.10.103
MA0145.10.114
MA0146.10.987
MA0147.10.662
MA0148.10.243
MA0149.10.899
MA0150.10.0137
MA0152.10.0316
MA0153.10.143
MA0154.10.0019
MA0155.10.187
MA0156.18.10281e-5
MA0157.10.113
MA0159.16.86847e-4
MA0160.10.148
MA0162.10.837
MA0163.10.042
MA0164.10.605
MA0258.10.0173
MA0259.10.814



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11962

Novel motifP-value
10.263
100.988
1000.839
1010.542
1020.936
1030.0786
1040.843
1050.464
1060.00116
1070.286
1080.481
1090.373
110.454
1100.577
1110.683
1120.0446
1130.102
1140.0407
1150.707
1160.791
1170.814
1180.643
1190.2
120.968
1200.3
1210.832
1220.0603
1230.0525
1240.425
1250.771
1260.695
1270.519
1280.106
1290.208
130.486
1300.0135
1310.226
1320.883
1330.313
1340.306
1350.00135
1360.464
1370.199
1380.116
1395.99888e-5
140.163
1400.943
1410.535
1420.963
1430.0717
1440.666
1450.936
1460.881
1470.72
1480.114
1490.254
150.181
1500.784
1510.179
1520.0471
1530.877
1540.979
1550.188
1560.589
1570.101
1580.0204
1590.188
160.615
1600.744
1610.571
1620.206
1630.802
1640.593
1650.275
1660.993
1670.26
1680.287
1690.0421
170.22
180.567
190.992
20.66
200.578
210.298
220.597
230.0545
240.954
250.336
260.756
270.247
280.476
290.57
30.355
300.933
310.497
320.96
330.921
340.444
350.245
360.0882
370.132
380.402
390.794
40.457
400.172
410.0452
420.732
430.22
440.38
450.274
460.382
470.43
480.59
490.19
50.1
500.546
510.552
520.184
530.361
540.728
550.934
560.888
570.785
580.0491
590.471
60.932
600.00905
610.678
620.0486
630.735
640.514
650.13
660.0884
670.519
680.54
690.478
70.155
700.0308
710.233
720.249
730.11
740.957
750.244
760.766
770.329
780.631
790.842
80.512
800.00708
810.415
820.00592
830.381
840.937
850.00226
860.285
870.339
880.461
890.0601
90.461
900.279
910.866
920.105
930.752
940.311
950.347
960.284
970.966
980.102
990.0264



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11962


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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