FF:11380-118B3: Difference between revisions

Latest revision as of 17:56, 4 June 2020

Name:	Fibroblast - Periodontal Ligament, donor6 (PLH3)
Species:	Human (Homo sapiens)
Library ID:	CNhs11996
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	periodontal ligament
dev stage	22 years old adult
sex	male
age	22
cell type	fibroblast
cell line	NA
company	N/A
collaboration	Mitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005628

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11996		CAGE		DRX008279		DRR009151

Accession ID Hg19

Library id		BAM		CTSS
CNhs11996		DRZ000576		DRZ001961

Accession ID Hg38

Library id		BAM		CTSS
CNhs11996		DRZ011926		DRZ013311

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0712
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0667
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.753
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.162
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0612
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.257
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0608
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.551
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.235
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.371
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.128
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.243
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.114
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.022
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0559
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.128
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.114
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.279
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.343
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.539
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.162
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.846
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0608
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.492
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11996

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0357
MA0003.1	MA0003.1	0.555
MA0004.1	MA0004.1	0.664
MA0006.1	MA0006.1	0.23
MA0007.1	MA0007.1	0.82
MA0009.1	MA0009.1	0.613
MA0014.1	MA0014.1	0.38
MA0017.1	MA0017.1	0.122
MA0018.2	MA0018.2	0.351
MA0019.1	MA0019.1	0.714
MA0024.1	MA0024.1	0.242
MA0025.1	MA0025.1	0.0825
MA0027.1	MA0027.1	0.613
MA0028.1	MA0028.1	0.0265
MA0029.1	MA0029.1	0.074
MA0030.1	MA0030.1	0.96
MA0031.1	MA0031.1	0.465
MA0035.2	MA0035.2	0.00665
MA0038.1	MA0038.1	0.282
MA0039.2	MA0039.2	0.0575
MA0040.1	MA0040.1	0.191
MA0041.1	MA0041.1	0.201
MA0042.1	MA0042.1	0.26
MA0043.1	MA0043.1	0.0899
MA0046.1	MA0046.1	0.882
MA0047.2	MA0047.2	0.767
MA0048.1	MA0048.1	0.601
MA0050.1	MA0050.1	1.21002e-5
MA0051.1	MA0051.1	1.77427e-5
MA0052.1	MA0052.1	0.704
MA0055.1	MA0055.1	0.188
MA0057.1	MA0057.1	0.64
MA0058.1	MA0058.1	0.569
MA0059.1	MA0059.1	0.0837
MA0060.1	MA0060.1	9.27316e-4
MA0061.1	MA0061.1	0.106
MA0062.2	MA0062.2	2.89467e-5
MA0065.2	MA0065.2	0.0184
MA0066.1	MA0066.1	0.503
MA0067.1	MA0067.1	0.177
MA0068.1	MA0068.1	0.023
MA0069.1	MA0069.1	0.504
MA0070.1	MA0070.1	0.656
MA0071.1	MA0071.1	0.596
MA0072.1	MA0072.1	0.391
MA0073.1	MA0073.1	0.881
MA0074.1	MA0074.1	0.466
MA0076.1	MA0076.1	0.0204
MA0077.1	MA0077.1	0.677
MA0078.1	MA0078.1	0.614
MA0079.2	MA0079.2	0.296
MA0080.2	MA0080.2	1.64927e-8
MA0081.1	MA0081.1	0.0273
MA0083.1	MA0083.1	0.00814
MA0084.1	MA0084.1	0.269
MA0087.1	MA0087.1	0.505
MA0088.1	MA0088.1	0.0771
MA0090.1	MA0090.1	0.00169
MA0091.1	MA0091.1	0.524
MA0092.1	MA0092.1	0.821
MA0093.1	MA0093.1	0.67
MA0099.2	MA0099.2	0.0394
MA0100.1	MA0100.1	0.561
MA0101.1	MA0101.1	0.387
MA0102.2	MA0102.2	0.52
MA0103.1	MA0103.1	0.00221
MA0104.2	MA0104.2	0.00553
MA0105.1	MA0105.1	1.49553e-4
MA0106.1	MA0106.1	0.607
MA0107.1	MA0107.1	0.391
MA0108.2	MA0108.2	8.47123e-6
MA0111.1	MA0111.1	0.246
MA0112.2	MA0112.2	0.231
MA0113.1	MA0113.1	0.804
MA0114.1	MA0114.1	0.0784
MA0115.1	MA0115.1	0.167
MA0116.1	MA0116.1	4.07547e-4
MA0117.1	MA0117.1	0.312
MA0119.1	MA0119.1	0.367
MA0122.1	MA0122.1	0.466
MA0124.1	MA0124.1	0.701
MA0125.1	MA0125.1	0.204
MA0131.1	MA0131.1	0.564
MA0135.1	MA0135.1	0.359
MA0136.1	MA0136.1	1.6243e-10
MA0137.2	MA0137.2	0.884
MA0138.2	MA0138.2	0.584
MA0139.1	MA0139.1	0.0714
MA0140.1	MA0140.1	0.0184
MA0141.1	MA0141.1	0.412
MA0142.1	MA0142.1	0.138
MA0143.1	MA0143.1	0.654
MA0144.1	MA0144.1	0.967
MA0145.1	MA0145.1	0.649
MA0146.1	MA0146.1	0.715
MA0147.1	MA0147.1	0.00142
MA0148.1	MA0148.1	0.963
MA0149.1	MA0149.1	0.336
MA0150.1	MA0150.1	0.0312
MA0152.1	MA0152.1	0.0641
MA0153.1	MA0153.1	0.826
MA0154.1	MA0154.1	0.0183
MA0155.1	MA0155.1	0.575
MA0156.1	MA0156.1	1.0664e-5
MA0157.1	MA0157.1	0.442
MA0159.1	MA0159.1	0.0537
MA0160.1	MA0160.1	0.435
MA0162.1	MA0162.1	0.583
MA0163.1	MA0163.1	4.6956e-4
MA0164.1	MA0164.1	0.673
MA0258.1	MA0258.1	0.443
MA0259.1	MA0259.1	0.0492

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11996

Novel motif	Logo	P-value
1	1	0.0215
10	10	0.169
100	100	0.436
101	101	0.168
102	102	0.132
103	103	0.382
104	104	0.48
105	105	0.153
106	106	0.988
107	107	0.528
108	108	0.721
109	109	0.348
11	11	0.147
110	110	0.0619
111	111	0.14
112	112	0.656
113	113	0.183
114	114	0.0621
115	115	0.0249
116	116	0.597
117	117	0.0784
118	118	0.0575
119	119	0.0715
12	12	0.26
120	120	0.805
121	121	0.327
122	122	0.237
123	123	0.00189
124	124	0.209
125	125	0.859
126	126	0.465
127	127	0.732
128	128	0.483
129	129	0.161
13	13	0.0431
130	130	0.22
131	131	0.751
132	132	0.398
133	133	0.259
134	134	0.0514
135	135	0.975
136	136	0.17
137	137	0.993
138	138	0.487
139	139	0.011
14	14	0.361
140	140	0.196
141	141	0.00279
142	142	0.997
143	143	0.734
144	144	0.487
145	145	0.431
146	146	0.657
147	147	0.287
148	148	0.306
149	149	0.806
15	15	0.134
150	150	0.527
151	151	0.635
152	152	0.0176
153	153	0.352
154	154	0.94
155	155	0.0272
156	156	0.641
157	157	0.0919
158	158	0.0135
159	159	0.434
16	16	0.684
160	160	0.211
161	161	0.419
162	162	0.792
163	163	0.76
164	164	0.708
165	165	0.643
166	166	0.0228
167	167	0.206
168	168	0.375
169	169	0.531
17	17	0.662
18	18	0.952
19	19	0.53
2	2	0.563
20	20	0.505
21	21	0.98
22	22	0.864
23	23	0.856
24	24	0.197
25	25	0.139
26	26	0.755
27	27	0.719
28	28	0.297
29	29	0.163
3	3	0.177
30	30	0.302
31	31	0.93
32	32	1.20706e-8
33	33	0.637
34	34	0.889
35	35	0.121
36	36	0.00886
37	37	0.468
38	38	0.232
39	39	0.805
4	4	0.288
40	40	0.0477
41	41	0.335
42	42	0.0967
43	43	0.37
44	44	0.666
45	45	0.875
46	46	0.267
47	47	0.032
48	48	0.0834
49	49	0.0965
5	5	0.421
50	50	0.62
51	51	0.655
52	52	0.639
53	53	0.15
54	54	0.867
55	55	0.878
56	56	0.428
57	57	0.185
58	58	0.199
59	59	0.518
6	6	0.948
60	60	0.643
61	61	0.399
62	62	0.233
63	63	0.865
64	64	0.177
65	65	0.894
66	66	0.365
67	67	0.987
68	68	0.22
69	69	0.933
7	7	0.0582
70	70	0.301
71	71	0.052
72	72	0.339
73	73	0.33
74	74	0.814
75	75	0.0711
76	76	0.911
77	77	0.993
78	78	0.0365
79	79	0.00651
8	8	0.456
80	80	0.292
81	81	0.312
82	82	0.0801
83	83	0.372
84	84	0.907
85	85	0.366
86	86	0.742
87	87	0.184
88	88	0.578
89	89	0.654
9	9	0.732
90	90	0.0663
91	91	0.218
92	92	0.505
93	93	0.394
94	94	0.223
95	95	0.531
96	96	0.214
97	97	0.468
98	98	0.145
99	99	0.06

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11996

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000067 human fibroblast of periodontium sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002556 (fibroblast of periodontium)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001758 (periodontium)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000165 (mouth)
0003672 (dentition)
0011137 (axial skeletal system)
0010323 (cranial skeletal system)
0003129 (skull)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000067 (human fibroblast of periodontium sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005628
-|accession_numbers=CAGE;DRX008279;DRR009151;DRZ000576;DRZ001961
+|accession_numbers=CAGE;DRX008279;DRR009151;DRZ000576;DRZ001961;DRZ011926;DRZ013311
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0010317,UBERON:0001555,UBERON:0001758,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0000165,UBERON:0003672,UBERON:0011137,UBERON:0010323,UBERON:0003129
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002556
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!2.30!224.31!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!2.08!118.84!TCF21;;chr10:28034739..28034756,-!p1@MKX!1.98!95.25!MKX;;chr1:170633348..170633399,+!p2@PRRX1!1.92!109.52!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!1.87!73.02!PRRX2;;chr16:86544113..86544145,+!p1@FOXF1!1.84!83.53!FOXF1;;chr9:132427972..132428056,+!p1@PRRX2!1.78!76.17!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.71!134.91!TWIST1;;chr1:170632477..170632506,+!p6@PRRX1!1.58!36.81!PRRX1;;chr6:1389789..1389821,+!p1@FOXF2!1.56!47.63!FOXF2;;chr1:170633262..170633285,+!p3@PRRX1!1.55!39.51!PRRX1;;chr17:59477233..59477263,+!p1@TBX2!1.49!90.74!TBX2;;chr2:19558373..19558392,-!p1@OSR1!1.48!78.42!OSR1;;chr2:200322654..200322707,-!p2@SATB2!1.48!41.92!SATB2;;chr4:4861385..4861398,+!p1@MSX1!1.44!75.87!MSX1;;chr1:40105299..40105326,-!p1@HEYL!1.44!26.44!HEYL;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!126.95!CREB3L1;;chr14:61116183..61116208,-!p1@SIX1!1.40!89.69!SIX1;;chr1:170632439..170632465,+!p11@PRRX1!1.40!23.89!PRRX1;;chr2:45236540..45236577,-!p1@SIX2!1.38!22.84!SIX2;;chr2:46524537..46524553,+!p1@EPAS1!1.35!2002.52!EPAS1;;chr9:96717629..96717644,-!p1@BARX1!1.31!19.38!BARX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.30!24.04!TFAP2C;;chr1:170632137..170632172,+!p10@PRRX1!1.30!18.93!PRRX1;;chr9:102584159..102584174,+!p2@NR4A3!1.29!32.75!NR4A3;;chr17:59477275..59477286,+!p3@TBX2!1.29!24.34!TBX2;;chr1:170632959..170632987,+!p4@PRRX1!1.27!19.23!PRRX1;;chr2:157189180..157189290,-!p1@NR4A2!1.26!87.14!NR4A2;;chr9:102584262..102584276,+!p1@NR4A3!1.26!38.31!NR4A3;;chr7:44143925..44143970,+!p1@AEBP1!1.23!348.25!AEBP1;;chr7:19157043..19157088,-!p2@TWIST1!1.21!38.01!TWIST1;;chr8:72756667..72756736,-!p2@MSC!1.20!23.29!MSC;;chr1:170633058..170633084,+!p5@PRRX1!1.18!14.12!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.17!23.14!CREB3L1;;chr1:170632250..170632277,+!p7@PRRX1!1.17!13.67!PRRX1;;chr7:96654133..96654150,-!p1@DLX5!1.17!13.67!DLX5;;chr2:200323414..200323455,-!p1@SATB2!1.15!28.09!SATB2;;chr6:45296048..45296082,+!p1@RUNX2!1.15!15.17!RUNX2;;chr17:59477197..59477212,+!p2@TBX2!1.13!21.78!TBX2;;chr2:239756671..239756732,+!p1@TWIST2!1.12!39.51!TWIST2;;chr1:170632115..170632136,+!p9@PRRX1!1.12!12.32!PRRX1;;chr1:170632310..170632321,+!p15@PRRX1!1.11!12.02!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.10!19.38!TCF12;;chr10:131762504..131762555,-!p1@EBF3!1.10!11.72!EBF3;;chr6:1389989..1390019,+!p2@FOXF2!1.10!11.57!FOXF2;;chr8:72756267..72756296,-!p4@MSC!1.09!16.83!MSC;;chr9:77112244..77112262,+!p1@RORB!1.09!12.62!RORB;;chr8:25902876..25902936,-!p1@EBF2!1.09!11.27!EBF2;;chr11:34642612..34642646,+!p1@EHF!1.09!11.27!EHF;;chr7:44143978..44143989,+!p2@AEBP1!1.08!20.28!AEBP1;;chr12:52445218..52445237,+!p1@NR4A1!1.06!131.91!NR4A1;;chr8:72756637..72756664,-!p3@MSC!1.06!11.87!MSC;;chr14:37131058..37131139,+!p1@PAX9!1.06!10.52!PAX9;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.89!NFATC4;;chr2:239756739..239756755,+!p2@TWIST2!1.04!17.13!TWIST2;;chr1:75602043..75602093,+!p1@LHX8!1.04!9.92!LHX8;;chr16:86600426..86600441,+!p1@FOXC2!1.02!23.74!FOXC2;;chr1:170632762..170632786,+!p13@PRRX1!1.02!9.46!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!1.01!9.16!PRRX1;;chr1:75600067..75600094,+!p2@LHX8!0.99!8.86!LHX8;;chr1:170632723..170632739,+!p8@PRRX1!0.99!8.71!PRRX1;;chr7:17338266..17338282,+!p1@AHR!0.97!92.70!AHR;;chr5:321810..321877,+!p1@AHRR!0.97!27.19!AHRR;;chr13:45151259..45151326,-!p2@TSC22D1!0.96!50.03!TSC22D1;;chr5:72744594..72744609,-!p1@FOXD1!0.93!35.61!FOXD1;;chr8:72756213..72756243,-!p5@MSC!0.93!9.77!MSC;;chr7:44143997..44144008,+!p3@AEBP1!0.93!9.62!AEBP1;;chr6:1389824..1389840,+!p3@FOXF2!0.92!7.36!FOXF2;;chr6:19837592..19837621,+!p1@ID4!0.91!45.22!ID4;;chr12:80085061..80085119,-!p6@PAWR!0.91!11.72!PAWR;;chr5:2751762..2751784,-!p1@IRX2!0.91!7.21!IRX2;;chrY:2803415..2803468,+!p1@ZFY!0.90!6.91!ZFY;;chr12:53614115..53614154,-!p1@RARG!0.89!37.71!RARG;;chr9:102584241..102584261,+!p4@NR4A3!0.88!10.52!NR4A3;;chr18:22932080..22932170,-!p1@ZNF521!0.87!28.85!ZNF521;;chr2:45236579..45236596,-!p2@SIX2!0.86!6.31!SIX2;;chr6:1312325..1312340,+!p1@FOXQ1!0.84!10.07!FOXQ1;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.86!KDM5D;;chr2:191878874..191878938,-!p1@STAT1!0.83!332.93!STAT1;;chr8:72756063..72756125,-!p1@MSC!0.83!12.32!MSC;;chr10:28035112..28035130,-!p5@MKX!0.83!5.71!MKX;;chr2:172949484..172949522,+!p1@DLX1!0.83!5.71!DLX1;;chr7:17338239..17338262,+!p2@AHR!0.82!44.32!AHR;;chr7:17338324..17338341,+!p3@AHR!0.82!19.83!AHR;;chr9:102584278..102584285,+!p5@NR4A3!0.82!5.56!NR4A3;;chr2:119604456..119604501,-!p2@EN1!0.80!5.26!EN1;;chr12:115122318..115122331,-!p2@TBX3!0.80!5.26!TBX3;;chr12:53625966..53626012,-!p2@RARG!0.79!14.42!RARG;;chr2:95963052..95963106,+!p1@KCNIP3!0.79!5.11!KCNIP3;;chr9:73029219..73029289,-!p2@KLF9!0.78!16.23!KLF9;;chr8:99956662..99956684,+!p1@OSR2!0.78!8.11!OSR2;;chr2:172950227..172950249,+!p2@DLX1!0.78!4.96!DLX1;;chr1:170633194..170633205,+!p18@PRRX1!0.78!4.96!PRRX1;;chr12:66218598..66218645,+!p2@HMGA2!0.77!24.79!HMGA2;;chr2:145277882..145277967,-!p3@ZEB2!0.77!8.86!ZEB2;;chr11:65687222..65687240,+!p7@DRAP1!0.77!6.46!DRAP1;;chr5:72744445..72744466,-!p2@FOXD1!0.76!8.26!FOXD1;;chr10:28032421..28032494,-!p2@MKX!0.76!4.81!MKX;;chr13:45150455..45150472,-!p8@TSC22D1!0.76!4.81!TSC22D1;;chr1:170632325..170632339,+!p24@PRRX1!0.76!4.81!PRRX1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.75!4.96!GLIS1;;chr7:96654026..96654061,-!p2@DLX5!0.75!4.66!DLX5;;chr10:28034772..28034783,-!p4@MKX!0.75!4.66!MKX;;chr12:52437488..52437507,+!p2@NR4A1!0.75!4.66!NR4A1;;chr11:12696002..12696022,+!p2@TEAD1!0.74!11.87!TEAD1;;chr9:102584128..102584144,+!p3@NR4A3!0.74!9.16!NR4A3;;chr3:141105705..141105770,+!p4@ZBTB38!0.74!5.56!ZBTB38;;chr1:170633245..170633256,+!p14@PRRX1!0.74!4.51!PRRX1;;chr11:46299443..46299459,+!p4@CREB3L1!0.74!4.51!CREB3L1;;chr11:65687362..65687436,+!p3@DRAP1!0.73!21.78!DRAP1;;chr12:66218255..66218304,+!p3@HMGA2!0.73!12.62!HMGA2;;chr11:615570..615721,-!p2@IRF7!0.73!9.31!IRF7;;chr5:134369905..134369972,-!p1@PITX1!0.73!7.06!PITX1;;chr2:191878812..191878823,-!p2@STAT1!0.73!5.71!STAT1;;chr14:95236440..95236465,-!p1@GSC!0.73!4.36!GSC;;chr8:48650715..48650735,-!p1@CEBPD!0.72!608.76!CEBPD;;chr9:4300050..4300118,-!p1@GLIS3!0.72!30.95!GLIS3;;chr16:79634624..79634642,-!p1@MAF!0.72!18.33!MAF;;chr10:28035133..28035148,-!p3@MKX!0.72!4.21!MKX;;chr1:170632028..170632043,+!p20@PRRX1!0.72!4.21!PRRX1;;chr2:145275162..145275202,-!p2@ZEB2!0.71!27.64!ZEB2;;chr11:65686732..65686756,+!p2@DRAP1!0.71!19.38!DRAP1;;chr2:46602879..46602899,+!p8@EPAS1!0.71!5.11!EPAS1;;chr7:44143738..44143760,+!p4@AEBP1!0.71!4.81!AEBP1;;chr22:38598086..38598105,+!p1@MAFF!0.70!48.68!MAFF;;chr9:73028814..73028895,-!p1@KLF9!0.70!45.07!KLF9;;chr11:12696071..12696086,+!p3@TEAD1!0.70!5.56!TEAD1;;chr10:28035155..28035166,-!p8@MKX!0.70!4.06!MKX;;chr1:170632414..170632421,+!p28@PRRX1!0.70!4.06!PRRX1;;chr14:62162285..62162296,+!p3@HIF1A!0.69!23.14!HIF1A;;chr2:192015701..192015743,-!p1@STAT4!0.69!5.56!STAT4;;chr2:46602901..46602926,+!p7@EPAS1!0.69!5.41!EPAS1;;chr8:72756380..72756427,-!p8@MSC!0.69!3.91!MSC;;chr11:65667884..65667895,-!p2@FOSL1!0.68!16.68!FOSL1;;chr13:45151403..45151433,-!p5@TSC22D1!0.68!9.01!TSC22D1;;chr16:54320158..54320200,-!p5@IRX3!0.68!5.71!IRX3;;chr8:60031934..60031986,-!p6@TOX!0.68!3.76!TOX;;chr2:172967242..172967265,-!p2@DLX2!0.68!3.76!DLX2;;chr1:170632647..170632659,+!p17@PRRX1!0.68!3.76!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.68!3.76!RUNX3;;chr9:96717678..96717689,-!p2@BARX1!0.68!3.76!BARX1;;chr6:34204921..34204939,+!p3@HMGA1!0.67!128.45!HMGA1;;chr1:200379104..200379128,-!p2@ZNF281!0.67!9.92!ZNF281;;chr16:79633894..79633954,-!p3@MAF!0.67!7.66!MAF;;chr10:63809106..63809127,+!p1@ARID5B!0.66!56.19!ARID5B;;chr14:62162258..62162269,+!p2@HIF1A!0.66!39.66!HIF1A;;chr12:53625846..53625861,-!p6@RARG!0.66!3.61!RARG;;chr1:170632051..170632081,+!p16@PRRX1!0.66!3.61!PRRX1;;chr1:170632867..170632878,+!p21@PRRX1!0.66!3.61!PRRX1;;chr1:170633294..170633303,+!p23@PRRX1!0.66!3.61!PRRX1;;chr2:200322229..200322251,-!p3@SATB2!0.66!3.61!SATB2;;chr17:59477266..59477273,+!p6@TBX2!0.66!3.61!TBX2;;chr11:65686802..65686818,+!p6@DRAP1!0.65!6.61!DRAP1;;chr14:61116168..61116180,-!p2@SIX1!0.65!4.06!SIX1;;chr19:45504688..45504782,+!p1@RELB!0.64!23.89!RELB;;chr16:54964740..54964789,+!p1@IRX5!0.64!5.11!IRX5;;chr14:21566731..21566836,-!p1@ZNF219!0.63!41.77!ZNF219;;chr11:65687158..65687216,+!p4@DRAP1!0.63!21.93!DRAP1;;chr10:63809013..63809041,+!p3@ARID5B!0.63!21.33!ARID5B;;chr1:8763440..8763460,-!p2@RERE!0.63!19.23!RERE;;chr15:83953397..83953425,-!p1@BNC1!0.63!3.91!BNC1;;chr3:157823517..157823562,-!p1@SHOX2!0.63!3.61!SHOX2;;chr1:170632583..170632590,+!p26@PRRX1!0.63!3.31!PRRX1;;chr12:80085120..80085156,-!p14@PAWR!0.62!3.15!PAWR;;chr8:72756251..72756262,-!p12@MSC!0.62!3.15!MSC;;chr2:145277640..145277771,-!p1@ZEB2!0.61!49.58!ZEB2;;chr5:158526917..158526932,-!p1@EBF1!0.61!8.71!EBF1;;chr2:28618532..28618610,+!p4@FOSL2!0.61!5.71!FOSL2;;chr3:141121847..141121868,+!p5@ZBTB38!0.61!5.11!ZBTB38;;chr19:33865009..33865090,+!p3@CEBPG!0.61!4.36!CEBPG;;chr3:178789522..178789564,-!p2@ZMAT3!0.60!26.44!ZMAT3;;chr19:36545128..36545203,-!p1@THAP8!0.60!16.53!THAP8;;chr7:28448965..28448994,+!p2@CREB5!0.60!12.17!CREB5;;chr10:31607702..31607755,+!p3@ZEB1!0.60!3.61!ZEB1;;chr5:3595977..3595999,+!p1@IRX1!0.60!3.00!IRX1;;chr14:75894714..75894733,+!p1@JDP2!0.59!99.46!JDP2;;chr3:71114066..71114114,-!p1@FOXP1!0.59!71.96!FOXP1;;chr5:174151553..174151610,+!p1@MSX2!0.59!5.26!MSX2;;chr5:3595934..3595957,+!p2@IRX1!0.59!2.85!IRX1;;chr14:37126765..37126799,+!p2@PAX9!0.59!2.85!PAX9;;chr12:52430894..52430952,+!p3@NR4A1!0.58!6.01!NR4A1;;chr17:46126136..46126152,+!p1@NFE2L1!0.57!175.63!NFE2L1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.57!33.20!GLIS2;;chr17:17726907..17726958,-!p2@SREBF1!0.57!20.28!SREBF1;;chr17:46132044..46132080,+!p4@NFE2L1!0.57!2.70!NFE2L1;;chr2:119605214..119605230,-!p1@EN1!0.57!2.70!EN1;;chr2:45236648..45236659,-!p5@SIX2!0.57!2.70!SIX2;;chr11:46333934..46333963,+!p5@CREB3L1!0.57!2.70!CREB3L1;;chr10:312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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002556;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Periodontal%2520Ligament%252c%2520donor6%2520%2528PLH3%2529.CNhs11996.11380-118B3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11380-118B3
 |is_a=EFO:0002091;;FF:0000067
@@ Line 46: / Line 52: @@
 |library_id=CNhs11996
 |library_id_phase_based=2:CNhs11996
-|name="Fibroblast - Periodontal Ligament, donor6 (PLH3)"
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11380
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11380
+|name=Fibroblast - Periodontal Ligament, donor6 (PLH3)
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
-|profile_hcage="CNhs11996,LSID837,release011,COMPLETED"
+|profile_hcage=CNhs11996,LSID837,release011,COMPLETED
 |profile_rnaseq=
-|profile_srnaseq=",,,"
+|profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11380-118B3;search_select_hide=table117:FF:11380-118B3
 }}

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FF:11380-118B3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 17:56, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0