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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005943
|DRA_sample_Accession=CAGE@SAMD00005943
|accession_numbers=CAGE;DRX008433;DRR009305;DRZ000730;DRZ002115
|accession_numbers=CAGE;DRX008433;DRR009305;DRZ000730;DRZ002115;DRZ012080;DRZ013465
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;11783
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11783
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;11783
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11783
|name=Renal Glomerular Endothelial Cells, donor4
|name=Renal Glomerular Endothelial Cells, donor4
|namespace=
|namespace=
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 101: Line 101:
|top_motifs=RXR{A,B,G}:2.33875168456;SOX{8,9,10}:2.16812196966;TFAP2{A,C}:1.95353578548;PBX1:1.82229890546;ZIC1..3:1.79664624741;GTF2A1,2:1.76765694889;ZNF423:1.74077631701;TFAP4:1.5621963854;bHLH_family:1.50836932888;HES1:1.47390153043;TLX1..3_NFIC{dimer}:1.4504227543;SPZ1:1.36421786728;IKZF1:1.33068496137;HAND1,2:1.28306464831;HIC1:1.21105494858;XCPE1{core}:1.12082517634;ESRRA:1.06680193928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05867181713;ZNF148:1.00176120246;SP1:0.991019343009;EBF1:0.963916450297;TP53:0.908124527675;LHX3,4:0.898984665132;RXRA_VDR{dimer}:0.878339728527;NANOG:0.872216994512;NR6A1:0.859415545879;TFAP2B:0.80980072063;POU2F1..3:0.772340063469;REST:0.768403547635;FOXL1:0.709384351067;TBP:0.707507723343;PAX1,9:0.68185171704;ZBTB6:0.681175289651;PATZ1:0.661235139164;GZF1:0.660986500965;NR5A1,2:0.655726356368;GATA6:0.649105967173;GLI1..3:0.639438064649;ARID5B:0.618500355375;SRF:0.607865430745;AR:0.59598988651;ETS1,2:0.587080674615;PAX5:0.585139574759;SOX5:0.503991423483;MTE{core}:0.499257006417;ZNF238:0.475334419299;LEF1_TCF7_TCF7L1,2:0.46846763621;TEAD1:0.451161180013;SMAD1..7,9:0.446132427683;ESR1:0.44060178124;MYOD1:0.413150952421;STAT2,4,6:0.389540482561;MED-1{core}:0.357830125867;GFI1B:0.352460583874;POU6F1:0.351465794976;SOX2:0.350282953205;HNF4A_NR2F1,2:0.331473260828;ATF6:0.328777185542;RREB1:0.28835205606;NFATC1..3:0.288281453923;HMX1:0.268243504321;FOX{D1,D2}:0.254823082151;MTF1:0.244780150546;UFEwm:0.225872542795;LMO2:0.20873969152;SPIB:0.178151868209;GTF2I:0.160522185004;EP300:0.138716468409;PPARG:0.12872185366;HOX{A5,B5}:0.127420760206;NFE2:0.116927284272;NFKB1_REL_RELA:0.114738867026;NKX2-3_NKX2-5:0.110336914314;PAX6:0.0306542706154;SOX17:0.0159775849122;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0106814613216;HNF1A:0.0102904187782;HBP1_HMGB_SSRP1_UBTF:0.00795016349191;MAFB:-0.0129319866906;NR1H4:-0.0235749739019;FOXM1:-0.0432043405405;FOSL2:-0.0597415116946;BACH2:-0.112489846616;ATF2:-0.12420276278;ELF1,2,4:-0.124802940958;MAZ:-0.131347835295;ADNP_IRX_SIX_ZHX:-0.133896137007;GFI1:-0.145521324364;EGR1..3:-0.14607915307;TOPORS:-0.151620944039;NFY{A,B,C}:-0.162927799025;NR3C1:-0.164171725876;MEF2{A,B,C,D}:-0.195803647085;TFCP2:-0.216455064704;FOS_FOS{B,L1}_JUN{B,D}:-0.220731974639;SNAI1..3:-0.23124640684;NFE2L1:-0.233663216772;POU3F1..4:-0.234072935199;IKZF2:-0.252088419532;CREB1:-0.267423868581;SPI1:-0.275989670994;MZF1:-0.280455076586;XBP1:-0.308583873754;STAT5{A,B}:-0.309852822521;ONECUT1,2:-0.321369917054;HOX{A6,A7,B6,B7}:-0.324802832765;ZFP161:-0.344730282729;T:-0.35514189723;ZEB1:-0.356717662235;JUN:-0.368903789314;TAL1_TCF{3,4,12}:-0.380549639191;IRF1,2:-0.387854300627;ZNF143:-0.390741525797;HOXA9_MEIS1:-0.39170973877;FOXQ1:-0.42985697702;YY1:-0.443706631892;NFE2L2:-0.457141512199;ALX4:-0.460105635907;CUX2:-0.462018391047;PITX1..3:-0.476092270354;GCM1,2:-0.507665130179;NANOG{mouse}:-0.516718112756;E2F1..5:-0.517606670733;SREBF1,2:-0.51865222547;MYB:-0.518975034014;FOXA2:-0.544501375656;RORA:-0.54822139126;NHLH1,2:-0.588872049681;RUNX1..3:-0.597821137242;HIF1A:-0.604808317565;PAX8:-0.636894264073;TFDP1:-0.644060243005;NKX3-1:-0.670742668978;RBPJ:-0.674847309159;ATF4:-0.684626019329;MYFfamily:-0.708900423454;HLF:-0.727916149479;NKX3-2:-0.785933225467;TEF:-0.798221497313;RFX1:-0.821912224189;CDC5L:-0.835690761868;NKX2-2,8:-0.849620758672;CEBPA,B_DDIT3:-0.849804545004;FOX{I1,J2}:-0.865458661241;PAX3,7:-0.907674212825;STAT1,3:-0.914168473802;HSF1,2:-0.951799431463;POU5F1:-0.95317336197;IRF7:-0.959082237974;KLF4:-0.964928175116;GATA4:-0.988348650789;PRDM1:-1.01696143845;FOX{F1,F2,J1}:-1.04229080314;BPTF:-1.08004368898;PRRX1,2:-1.09089234492;FOXD3:-1.09325731297;PAX2:-1.10412906175;DMAP1_NCOR{1,2}_SMARC:-1.12190623319;EVI1:-1.12449310177;AHR_ARNT_ARNT2:-1.1262066224;NRF1:-1.14904837619;ATF5_CREB3:-1.15053032681;CRX:-1.15461731706;TBX4,5:-1.15467286156;EN1,2:-1.16935941104;BREu{core}:-1.17597956898;NFIX:-1.28211162171;DBP:-1.28220088051;ZNF384:-1.28411913435;MYBL2:-1.33299064565;PAX4:-1.34903722119;POU1F1:-1.35980799744;AIRE:-1.39121428822;TLX2:-1.40695994069;RFX2..5_RFXANK_RFXAP:-1.43652766938;OCT4_SOX2{dimer}:-1.44651922734;HMGA1,2:-1.4548792959;ELK1,4_GABP{A,B1}:-1.46382784614;PDX1:-1.47527019626;FOXN1:-1.47647368879;TGIF1:-1.49182902342;NFIL3:-1.511702569;NKX2-1,4:-1.56408220445;ALX1:-1.68115139888;FOXO1,3,4:-1.74841253642;VSX1,2:-1.78747662774;FOXP1:-1.82682713286;FOXP3:-1.8542592104;ZBTB16:-1.97778066608;HOX{A4,D4}:-2.23555797007;NKX6-1,2:-2.50279333952;CDX1,2,4:-2.7743088936
|top_motifs=RXR{A,B,G}:2.33875168456;SOX{8,9,10}:2.16812196966;TFAP2{A,C}:1.95353578548;PBX1:1.82229890546;ZIC1..3:1.79664624741;GTF2A1,2:1.76765694889;ZNF423:1.74077631701;TFAP4:1.5621963854;bHLH_family:1.50836932888;HES1:1.47390153043;TLX1..3_NFIC{dimer}:1.4504227543;SPZ1:1.36421786728;IKZF1:1.33068496137;HAND1,2:1.28306464831;HIC1:1.21105494858;XCPE1{core}:1.12082517634;ESRRA:1.06680193928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.05867181713;ZNF148:1.00176120246;SP1:0.991019343009;EBF1:0.963916450297;TP53:0.908124527675;LHX3,4:0.898984665132;RXRA_VDR{dimer}:0.878339728527;NANOG:0.872216994512;NR6A1:0.859415545879;TFAP2B:0.80980072063;POU2F1..3:0.772340063469;REST:0.768403547635;FOXL1:0.709384351067;TBP:0.707507723343;PAX1,9:0.68185171704;ZBTB6:0.681175289651;PATZ1:0.661235139164;GZF1:0.660986500965;NR5A1,2:0.655726356368;GATA6:0.649105967173;GLI1..3:0.639438064649;ARID5B:0.618500355375;SRF:0.607865430745;AR:0.59598988651;ETS1,2:0.587080674615;PAX5:0.585139574759;SOX5:0.503991423483;MTE{core}:0.499257006417;ZNF238:0.475334419299;LEF1_TCF7_TCF7L1,2:0.46846763621;TEAD1:0.451161180013;SMAD1..7,9:0.446132427683;ESR1:0.44060178124;MYOD1:0.413150952421;STAT2,4,6:0.389540482561;MED-1{core}:0.357830125867;GFI1B:0.352460583874;POU6F1:0.351465794976;SOX2:0.350282953205;HNF4A_NR2F1,2:0.331473260828;ATF6:0.328777185542;RREB1:0.28835205606;NFATC1..3:0.288281453923;HMX1:0.268243504321;FOX{D1,D2}:0.254823082151;MTF1:0.244780150546;UFEwm:0.225872542795;LMO2:0.20873969152;SPIB:0.178151868209;GTF2I:0.160522185004;EP300:0.138716468409;PPARG:0.12872185366;HOX{A5,B5}:0.127420760206;NFE2:0.116927284272;NFKB1_REL_RELA:0.114738867026;NKX2-3_NKX2-5:0.110336914314;PAX6:0.0306542706154;SOX17:0.0159775849122;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0106814613216;HNF1A:0.0102904187782;HBP1_HMGB_SSRP1_UBTF:0.00795016349191;MAFB:-0.0129319866906;NR1H4:-0.0235749739019;FOXM1:-0.0432043405405;FOSL2:-0.0597415116946;BACH2:-0.112489846616;ATF2:-0.12420276278;ELF1,2,4:-0.124802940958;MAZ:-0.131347835295;ADNP_IRX_SIX_ZHX:-0.133896137007;GFI1:-0.145521324364;EGR1..3:-0.14607915307;TOPORS:-0.151620944039;NFY{A,B,C}:-0.162927799025;NR3C1:-0.164171725876;MEF2{A,B,C,D}:-0.195803647085;TFCP2:-0.216455064704;FOS_FOS{B,L1}_JUN{B,D}:-0.220731974639;SNAI1..3:-0.23124640684;NFE2L1:-0.233663216772;POU3F1..4:-0.234072935199;IKZF2:-0.252088419532;CREB1:-0.267423868581;SPI1:-0.275989670994;MZF1:-0.280455076586;XBP1:-0.308583873754;STAT5{A,B}:-0.309852822521;ONECUT1,2:-0.321369917054;HOX{A6,A7,B6,B7}:-0.324802832765;ZFP161:-0.344730282729;T:-0.35514189723;ZEB1:-0.356717662235;JUN:-0.368903789314;TAL1_TCF{3,4,12}:-0.380549639191;IRF1,2:-0.387854300627;ZNF143:-0.390741525797;HOXA9_MEIS1:-0.39170973877;FOXQ1:-0.42985697702;YY1:-0.443706631892;NFE2L2:-0.457141512199;ALX4:-0.460105635907;CUX2:-0.462018391047;PITX1..3:-0.476092270354;GCM1,2:-0.507665130179;NANOG{mouse}:-0.516718112756;E2F1..5:-0.517606670733;SREBF1,2:-0.51865222547;MYB:-0.518975034014;FOXA2:-0.544501375656;RORA:-0.54822139126;NHLH1,2:-0.588872049681;RUNX1..3:-0.597821137242;HIF1A:-0.604808317565;PAX8:-0.636894264073;TFDP1:-0.644060243005;NKX3-1:-0.670742668978;RBPJ:-0.674847309159;ATF4:-0.684626019329;MYFfamily:-0.708900423454;HLF:-0.727916149479;NKX3-2:-0.785933225467;TEF:-0.798221497313;RFX1:-0.821912224189;CDC5L:-0.835690761868;NKX2-2,8:-0.849620758672;CEBPA,B_DDIT3:-0.849804545004;FOX{I1,J2}:-0.865458661241;PAX3,7:-0.907674212825;STAT1,3:-0.914168473802;HSF1,2:-0.951799431463;POU5F1:-0.95317336197;IRF7:-0.959082237974;KLF4:-0.964928175116;GATA4:-0.988348650789;PRDM1:-1.01696143845;FOX{F1,F2,J1}:-1.04229080314;BPTF:-1.08004368898;PRRX1,2:-1.09089234492;FOXD3:-1.09325731297;PAX2:-1.10412906175;DMAP1_NCOR{1,2}_SMARC:-1.12190623319;EVI1:-1.12449310177;AHR_ARNT_ARNT2:-1.1262066224;NRF1:-1.14904837619;ATF5_CREB3:-1.15053032681;CRX:-1.15461731706;TBX4,5:-1.15467286156;EN1,2:-1.16935941104;BREu{core}:-1.17597956898;NFIX:-1.28211162171;DBP:-1.28220088051;ZNF384:-1.28411913435;MYBL2:-1.33299064565;PAX4:-1.34903722119;POU1F1:-1.35980799744;AIRE:-1.39121428822;TLX2:-1.40695994069;RFX2..5_RFXANK_RFXAP:-1.43652766938;OCT4_SOX2{dimer}:-1.44651922734;HMGA1,2:-1.4548792959;ELK1,4_GABP{A,B1}:-1.46382784614;PDX1:-1.47527019626;FOXN1:-1.47647368879;TGIF1:-1.49182902342;NFIL3:-1.511702569;NKX2-1,4:-1.56408220445;ALX1:-1.68115139888;FOXO1,3,4:-1.74841253642;VSX1,2:-1.78747662774;FOXP1:-1.82682713286;FOXP3:-1.8542592104;ZBTB16:-1.97778066608;HOX{A4,D4}:-2.23555797007;NKX6-1,2:-2.50279333952;CDX1,2,4:-2.7743088936
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11783-124B1;search_select_hide=table117:FF:11783-124B1
}}
}}

Latest revision as of 18:20, 4 June 2020

Name:Renal Glomerular Endothelial Cells, donor4
Species:Human (Homo sapiens)
Library ID:CNhs13080
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexNA
ageNA
cell typeNA
cell lineNA
companyNA
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberRNA5949
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005943
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13080 CAGE DRX008433 DRR009305
Accession ID Hg19

Library idBAMCTSS
CNhs13080 DRZ000730 DRZ002115
Accession ID Hg38

Library idBAMCTSS
CNhs13080 DRZ012080 DRZ013465
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0366
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.283
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen1.481
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.855
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.405
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.348
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0676
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.812
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.822
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.405
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.652
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.255
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal1.254
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.855
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.405
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13080

Jaspar motifP-value
MA0002.20.758
MA0003.10.276
MA0004.10.283
MA0006.10.146
MA0007.10.074
MA0009.10.566
MA0014.10.797
MA0017.10.12
MA0018.20.295
MA0019.10.0148
MA0024.10.00962
MA0025.10.862
MA0027.10.889
MA0028.10.0113
MA0029.10.447
MA0030.10.856
MA0031.10.457
MA0035.20.0183
MA0038.10.495
MA0039.20.592
MA0040.10.239
MA0041.10.246
MA0042.10.736
MA0043.10.0169
MA0046.10.0541
MA0047.20.871
MA0048.10.865
MA0050.10.337
MA0051.10.807
MA0052.10.162
MA0055.10.175
MA0057.10.49
MA0058.10.17
MA0059.10.369
MA0060.10.0657
MA0061.10.348
MA0062.28.66991e-4
MA0065.20.126
MA0066.10.214
MA0067.10.187
MA0068.10.944
MA0069.10.408
MA0070.10.0362
MA0071.10.421
MA0072.10.715
MA0073.10.748
MA0074.10.0672
MA0076.11.29484e-4
MA0077.11.94302e-4
MA0078.10.108
MA0079.20.308
MA0080.20.313
MA0081.10.687
MA0083.10.00255
MA0084.10.163
MA0087.10.456
MA0088.10.863
MA0090.10.154
MA0091.10.309
MA0092.10.627
MA0093.10.287
MA0099.20.36
MA0100.10.0643
MA0101.10.165
MA0102.27.03912e-4
MA0103.10.327
MA0104.20.562
MA0105.10.488
MA0106.10.254
MA0107.10.079
MA0108.21.31839e-6
MA0111.10.441
MA0112.20.0611
MA0113.10.123
MA0114.10.664
MA0115.10.327
MA0116.10.859
MA0117.10.344
MA0119.10.208
MA0122.10.874
MA0124.10.998
MA0125.10.727
MA0131.10.331
MA0135.10.0946
MA0136.10.523
MA0137.20.461
MA0138.20.05
MA0139.10.336
MA0140.10.246
MA0141.10.103
MA0142.10.633
MA0143.10.233
MA0144.10.449
MA0145.10.175
MA0146.10.128
MA0147.10.713
MA0148.10.352
MA0149.10.197
MA0150.10.558
MA0152.10.0261
MA0153.10.14
MA0154.10.201
MA0155.10.0181
MA0156.10.442
MA0157.10.418
MA0159.10.0501
MA0160.10.246
MA0162.10.162
MA0163.10.276
MA0164.10.0304
MA0258.10.0773
MA0259.10.423



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13080

Novel motifP-value
10.822
100.312
1000.456
1010.0515
1020.628
1030.853
1040.136
1050.303
1060.0336
1070.00978
1080.303
1090.104
110.163
1100.173
1110.846
1120.78
1130.265
1140.749
1150.0837
1160.897
1170.676
1180.769
1190.221
120.701
1200.0623
1210.626
1220.788
1230.0476
1240.308
1250.388
1260.987
1270.833
1280.191
1290.0944
130.396
1300.948
1310.175
1320.179
1330.307
1340.526
1350.34
1360.692
1370.311
1380.791
1390.509
140.869
1400.192
1410.679
1420.898
1430.215
1440.503
1450.278
1460.409
1470.35
1480.281
1490.1
150.341
1500.286
1510.615
1520.0189
1530.179
1540.272
1550.0497
1560.265
1570.807
1580.993
1590.364
160.589
1600.00647
1610.934
1620.192
1630.726
1640.72
1650.111
1660.284
1670.19
1680.984
1690.0908
170.388
180.647
190.149
20.328
200.378
210.673
220.155
230.308
240.8
250.276
260.281
270.321
280.135
290.987
30.968
300.395
310.433
320.0136
330.42
340.0863
350.592
360.163
370.203
380.267
390.133
40.297
400.00691
410.715
420.966
430.776
440.994
450.156
460.591
470.594
480.379
490.948
50.59
500.579
510.408
520.692
530.306
540.402
550.618
560.367
570.876
580.303
590.0109
60.408
600.803
610.939
620.244
630.488
640.264
650.0363
660.955
670.498
680.0458
690.167
70.595
700.35
710.41
720.431
730.00477
740.297
750.551
760.171
770.093
780.194
790.00253
80.134
800.931
810.39
820.372
830.384
840.155
850.205
860.981
870.307
880.835
890.706
90.365
900.0163
910.194
920.878
930.331
940.506
950.116
960.384
970.547
980.688
990.145



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13080


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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