FFCP PHASE1:Hg19::chr7:44580918..44580934,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:44580918..44580934,- to FFCP PHASE1:Hg19::chr7:44580918..44580934,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=29881 | |EntrezGene=29881 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7898 | |HGNC=7898 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UHC9,Q17RV5,D3DVK9 | |UniProt=Q9UHC9,Q17RV5,D3DVK9 | ||
|association_with_transcript=-4bp_to_ENST00000289547,ENST00000381160,ENST00000423141,NM_001101648,NM_013389,uc003tlb.2,uc003tlc.2,uc003tld.2,uc011kbw.1_5end | |||
|cluster_id=chr7:44580918..44580934,- | |||
|coexpression_cluster_id=C794 | |||
|description=CAGE_peak_2_at_NPC1L1_5end | |||
|id=chr7:44580918..44580934,- | |||
|ontology_enrichment_celltype=CL:1000507!7.33e-22!12;CL:1000494!7.33e-22!12;CL:1000497!1.20e-16!18;CL:0002518!1.20e-16!18;CL:1000449!7.76e-16!16;CL:0000181!6.75e-15!12;CL:0000417!6.75e-15!12;CL:0000668!6.75e-15!12;CL:0000414!6.75e-15!12;CL:0000412!6.75e-15!12;CL:0000182!6.75e-15!12;CL:0002681!8.17e-10!13;CL:0002584!8.17e-10!13;CL:0000239!2.56e-09!3;CL:1000615!2.56e-09!3;CL:0002306!2.56e-09!3 | |||
|ontology_enrichment_celltype_v019=CL:1000507;5.86e-38;10!CL:1000494;5.86e-38;10!CL:0000182;2.82e-26;12!CL:1000449;8.07e-25;15!CL:1000497;1.00e-21;17!CL:0002518;1.00e-21;17!CL:0000239;2.34e-15;3!CL:1000615;2.34e-15;3!CL:0002306;2.34e-15;3!CL:0002681;3.22e-14;12!CL:0002584;3.22e-14;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,6.70e-38,10;CL:1000494,6.70e-38,10;CL:0000182,2.39e-26,12;CL:1000449,8.81e-25,15;CL:1000497,1.08e-21,17;CL:0002518,1.08e-21,17;CL:0000239,2.22e-15,3;CL:1000615,2.22e-15,3;CL:0002306,2.22e-15,3;CL:0002681,3.46e-14,12;CL:0002584,3.46e-14,12;CL:0000223,4.05e-10,58;CL:0000066,6.46e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.02e-28;11!UBERON:0009497;4.10e-24;13!UBERON:0003104;3.83e-14;31!UBERON:0001041;1.75e-07;30!CL:0000223;7.15e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005172!4.10e-26!55;UBERON:0005173!4.10e-26!55;UBERON:0002417!7.59e-23!61;UBERON:0000916!7.59e-23!61;UBERON:0009773!7.33e-22!12;UBERON:0001231!7.33e-22!12;UBERON:0004810!7.33e-22!12;UBERON:0006555!7.93e-18!17;UBERON:0005103!7.93e-18!17;UBERON:0000083!7.93e-18!17;UBERON:0009201!7.93e-18!17;UBERON:0004819!7.93e-18!17;UBERON:0006553!7.93e-18!17;UBERON:0003074!7.93e-18!17;UBERON:0003060!7.93e-18!17;UBERON:0002113!6.13e-17!27;UBERON:0003918!6.13e-17!27;UBERON:0005095!6.13e-17!27;UBERON:0007687!6.13e-17!27;UBERON:0000080!1.08e-16!18;UBERON:0002120!1.08e-16!18;UBERON:0004875!1.08e-16!18;UBERON:0005721!1.08e-16!18;UBERON:0005754!1.08e-16!18;UBERON:0007297!1.08e-16!18;UBERON:0004211!7.76e-16!16;UBERON:0001285!7.76e-16!16;UBERON:0007684!7.76e-16!16;UBERON:0003220!7.76e-16!16;UBERON:0004208!7.76e-16!16;UBERON:0004876!9.04e-15!20;UBERON:0005177!1.84e-14!107;UBERON:0002107!5.54e-14!19;UBERON:0006925!5.54e-14!19;UBERON:0008836!5.54e-14!19;UBERON:0003887!6.02e-14!21;UBERON:0000489!9.51e-14!32;UBERON:0009497!2.66e-12!25;UBERON:0000015!2.66e-12!25;UBERON:0002423!2.66e-12!25;UBERON:0006235!2.66e-12!25;UBERON:0004161!2.66e-12!25;UBERON:0009569!3.58e-12!113;UBERON:0007499!4.22e-12!25;UBERON:0008835!9.21e-12!22;UBERON:0003894!9.21e-12!22;UBERON:0009856!1.55e-11!26;UBERON:0009854!3.75e-11!23;UBERON:0000466!4.82e-11!126;UBERON:0000058!8.69e-11!26;UBERON:0006554!1.39e-10!44;UBERON:0001008!2.87e-10!45;UBERON:0001225!8.17e-10!13;UBERON:0008987!8.17e-10!13;UBERON:0005057!1.32e-09!26;UBERON:0006853!2.56e-09!3;UBERON:0007685!2.56e-09!3;UBERON:0004134!2.56e-09!3;UBERON:0003064!2.84e-08!37;UBERON:0001851!9.14e-08!16;UBERON:0003914!9.32e-08!118;UBERON:0002365!1.05e-07!31;UBERON:0002330!1.05e-07!31;UBERON:0003929!1.86e-07!54;UBERON:0003886!2.57e-07!63;UBERON:0000353!3.04e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;5.86e-38;10!UBERON:0009773;5.86e-38;10!UBERON:0001231;5.86e-38;10!UBERON:0004810;5.86e-38;10!UBERON:0002107;2.09e-25;19!UBERON:0006925;2.09e-25;19!UBERON:0006555;8.07e-25;15!UBERON:0004819;8.07e-25;15!UBERON:0001285;8.07e-25;15!UBERON:0007684;8.07e-25;15!UBERON:0005172;1.45e-23;52!UBERON:0005173;1.45e-23;52!UBERON:0002423;6.63e-23;25!UBERON:0002113;2.05e-18;24!UBERON:0011143;2.05e-18;24!UBERON:0002417;3.13e-17;58!UBERON:0000916;3.13e-17;58!UBERON:0006853;2.34e-15;3!UBERON:0007685;2.34e-15;3!UBERON:0004134;2.34e-15;3!UBERON:0000489;6.26e-15;29!UBERON:0002365;1.61e-14;31!UBERON:0002330;1.61e-14;31!UBERON:0006554;2.26e-14;30!UBERON:0001008;2.26e-14;30!UBERON:0001225;3.22e-14;12!UBERON:0008987;3.22e-14;12!UBERON:0000160;2.93e-13;17!UBERON:0005409;3.20e-13;22!UBERON:0002368;1.32e-12;33!UBERON:0001851;2.89e-11;15!UBERON:0000353;2.89e-11;15!UBERON:0002108;2.78e-10;4!UBERON:0004921;4.42e-08;33!UBERON:0001007;4.79e-08;81!UBERON:0000949;6.52e-08;43!UBERON:0009569;1.61e-07;110!UBERON:0005177;2.73e-07;99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,6.70e-38,10;UBERON:0005172,3.18e-36,54;UBERON:0005173,3.18e-36,54;UBERON:0002417,4.00e-32,60;UBERON:0000916,4.00e-32,60;UBERON:0002107,1.81e-25,19;UBERON:0006925,1.81e-25,19;UBERON:0008836,1.81e-25,19;UBERON:0004211,8.81e-25,15;UBERON:0009773,8.81e-25,15;UBERON:0001231,8.81e-25,15;UBERON:0001285,8.81e-25,15;UBERON:0007684,8.81e-25,15;UBERON:0004208,8.81e-25,15;UBERON:0006555,3.86e-23,16;UBERON:0004819,3.86e-23,16;UBERON:0009497,5.95e-23,25;UBERON:0000015,5.95e-23,25;UBERON:0002423,5.95e-23,25;UBERON:0006235,5.95e-23,25;UBERON:0004161,5.95e-23,25;UBERON:0008835,9.77e-22,22;UBERON:0003894,9.77e-22,22;UBERON:0009854,1.04e-20,23;UBERON:0007499,6.70e-19,25;UBERON:0009856,4.23e-18,26;UBERON:0005177,3.68e-17,101;UBERON:0002113,7.50e-17,26;UBERON:0003918,7.50e-17,26;UBERON:0011143,7.50e-17,26;UBERON:0005095,7.50e-17,26;UBERON:0007687,7.50e-17,26;UBERON:0003929,1.54e-15,54;UBERON:0006853,2.22e-15,3;UBERON:0007685,2.22e-15,3;UBERON:0004134,2.22e-15,3;UBERON:0009569,5.15e-15,112;UBERON:0002365,7.11e-15,31;UBERON:0002330,7.11e-15,31;UBERON:0001225,3.46e-14,12;UBERON:0008987,3.46e-14,12;UBERON:0000489,7.61e-14,31;UBERON:0000160,2.96e-13,17;UBERON:0002368,5.86e-13,35;UBERON:0003914,1.08e-12,117;UBERON:0005409,1.52e-11,25;UBERON:0003104,2.27e-11,160;UBERON:0009142,2.27e-11,160;UBERON:0004921,2.59e-11,118;UBERON:0001851,3.06e-11,15;UBERON:0000353,3.06e-11,15;UBERON:0006554,2.36e-10,47;UBERON:0002108,2.78e-10,4;UBERON:0001008,4.27e-10,48;UBERON:0000949,1.15e-09,45;UBERON:0001007,1.37e-09,145;UBERON:0001555,1.37e-09,145;UBERON:0007026,1.37e-09,145;UBERON:0005911,3.18e-09,82;UBERON:0002530,2.17e-08,59;UBERON:0004119,2.70e-08,160;UBERON:0000925,2.70e-08,160;UBERON:0006595,2.70e-08,160;UBERON:0002100,2.68e-07,199;UBERON:0000025,7.08e-07,192 | |||
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| ||
|short_description=p2@NPC1L1 | |||
}} | }} |
Latest revision as of 17:23, 18 September 2015
Short description: | p2@NPC1L1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NPC1L1_5end |
Coexpression cluster: | C794_small_signet_adenocarcinoma_colon_Hepatocyte_gall_liver |
Association with transcript: | -4bp_to_ENST00000289547, ENST00000381160, ENST00000423141, NM_001101648, NM_013389, uc003tlb.2, uc003tlc.2, uc003tld.2, uc011kbw.1_5end |
EntrezGene: | NPC1L1 |
HGNC: | 7898 |
UniProt: | Q9UHC9Q17RV5D3DVK9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 6.70e-38 | 10 |
nephron tubule epithelial cell | 6.70e-38 | 10 |
hepatocyte | 2.39e-26 | 12 |
epithelial cell of nephron | 8.81e-25 | 15 |
kidney cell | 1.08e-21 | 17 |
kidney epithelial cell | 1.08e-21 | 17 |
brush border epithelial cell | 2.22e-15 | 3 |
kidney cortex tubule cell | 2.22e-15 | 3 |
epithelial cell of proximal tubule | 2.22e-15 | 3 |
kidney cortical cell | 3.46e-14 | 12 |
renal cortical epithelial cell | 3.46e-14 | 12 |
endodermal cell | 4.05e-10 | 58 |
epithelial cell | 6.46e-07 | 253 |