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{{f5samples
{{f5samples
|F5samples=
|DRA_sample_Accession=CAGE@SAMD00005972
|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000025,UBERON:0000058,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000077,UBERON:0000119,UBERON:0000353,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001171,UBERON:0001172,UBERON:0001173,UBERON:0001280,UBERON:0001282,UBERON:0001555,UBERON:0002050,UBERON:0002100,UBERON:0002107,UBERON:0002294,UBERON:0002330,UBERON:0002365,UBERON:0002368,UBERON:0002394,UBERON:0002405,UBERON:0002417,UBERON:0002423,UBERON:0002530,UBERON:0002532,UBERON:0003104,UBERON:0003704,UBERON:0003894,UBERON:0003914,UBERON:0003928,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004647,UBERON:0004912,UBERON:0004921,UBERON:0005057,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0005911,UBERON:0006235,UBERON:0006925,UBERON:0007026,UBERON:0008835,UBERON:0008836,UBERON:0009142
|accession_numbers=CAGE;DRX007847;DRR008719;DRZ000144;DRZ001529;DRZ011494;DRZ012879
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001282,UBERON:0002394,UBERON:0000058,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0009842,UBERON:0000353,UBERON:0003704,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0003928,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0001280,UBERON:0001171,UBERON:0004647,UBERON:0002294,UBERON:0001173,UBERON:0001172,UBERON:0002330,UBERON:0000916,UBERON:0002423
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4,DOID:7
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100224,FF:0100578,FF:0102842
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr8:72756637..72756664,-!p3@MSC!1.83!75.66!MSC;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.67!45.69!SEBOX;;chr8:72755987..72756002,-!p7@MSC!1.61!39.99!MSC;;chr8:72756267..72756296,-!p4@MSC!1.52!46.15!MSC;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!47.97!FOXQ1;;chr8:72756063..72756125,-!p1@MSC!1.47!56.74!MSC;;chr18:55102628..55102646,+!p2@ONECUT2!1.44!26.32!ONECUT2;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.41!24.50!SOHLH2;;chr8:72756667..72756736,-!p2@MSC!1.40!37.60!MSC;;chr2:119605214..119605230,-!p1@EN1!1.36!22.10!EN1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.36!22.10!SEBOX;;chr18:55102598..55102623,+!p1@ONECUT2!1.35!21.31!ONECUT2;;chr5:174151612..174151633,+!p2@MSX2!1.35!21.19!MSX2;;chr5:174151553..174151610,+!p1@MSX2!1.32!32.59!MSX2;;chr6:45296048..45296082,+!p1@RUNX2!1.30!21.54!RUNX2;;chr3:193853927..193853944,+!p1@HES1!1.24!517.64!HES1;;chr18:19749541..19749557,+!p1@GATA6!1.18!43.75!GATA6;;chr8:72756380..72756427,-!p8@MSC!1.15!12.99!MSC;;chr1:37940170..37940190,+!p1@ZC3H12A!1.13!154.51!ZC3H12A;;chr14:62162285..62162296,+!p3@HIF1A!1.11!62.33!HIF1A;;chr8:72756213..72756243,-!p5@MSC!1.11!15.38!MSC;;chr2:113994526..113994556,-!p3@PAX8!1.11!11.74!PAX8;;chr5:321810..321877,+!p1@AHRR!1.10!36.80!AHRR;;chr11:46299199..46299233,+!p1@CREB3L1!1.09!58.68!CREB3L1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.06!100.38!ZNF595;;chr2:19558373..19558392,-!p1@OSR1!1.06!28.83!OSR1;;chr2:113994491..113994515,-!p7@PAX8!1.05!10.14!PAX8;;chr6:126240380..126240430,+!p2@NCOA7!1.04!26.32!NCOA7;;chr1:75602043..75602093,+!p1@LHX8!1.03!9.69!LHX8;;chr13:45010939..45011033,-!p1@TSC22D1!1.02!625.43!TSC22D1;;chr18:55102806..55102847,+!p3@ONECUT2!1.00!9.00!ONECUT2;;chr8:11561684..11561751,+!p1@GATA4!1.00!9.00!GATA4;;chr8:72756023..72756055,-!p6@MSC!0.98!10.60!MSC;;chr8:49833948..49833973,-!p2@SNAI2!0.97!54.35!SNAI2;;chr21:47063625..47063658,+!p1@PCBP3!0.97!37.03!PCBP3;;chr1:164528687..164528711,+!p6@PBX1!0.97!9.80!PBX1;;chr1:158985493..158985535,+!p4@IFI16!0.96!12.53!IFI16;;chr12:26277817..26277863,-!p2@BHLHE41!0.94!10.48!BHLHE41;;chr11:61520075..61520136,+!p1@C11orf9!0.93!16.52!C11orf9;;chr20:6748325..6748352,+!p1@BMP2!0.93!11.17!BMP2;;chr5:142780189..142780223,-!p6@NR3C1!0.93!7.52!NR3C1;;chr3:187463179..187463201,-!p2@BCL6!0.92!31.56!BCL6;;chr6:10412600..10412637,-!p1@TFAP2A!0.92!12.42!TFAP2A;;chr2:46524537..46524553,+!p1@EPAS1!0.90!714.19!EPAS1;;chr16:79633894..79633954,-!p3@MAF!0.90!13.90!MAF;;chr6:45390300..45390335,+!p4@RUNX2!0.90!11.17!RUNX2;;chr6:126240442..126240459,+!p4@NCOA7!0.90!8.89!NCOA7;;chr5:50679228..50679288,+!p1@ISL1!0.89!6.72!ISL1;;chr14:62162258..62162269,+!p2@HIF1A!0.88!67.11!HIF1A;;chr6:45390442..45390479,+!p8@RUNX2!0.88!10.37!RUNX2;;chr5:137804484..137804498,+!p2@EGR1!0.87!26.78!EGR1;;chr2:239756739..239756755,+!p2@TWIST2!0.87!11.17!TWIST2;;chr2:239756671..239756732,+!p1@TWIST2!0.86!21.19!TWIST2;;chr8:72756194..72756208,-!p9@MSC!0.86!6.27!MSC;;chr17:46703687..46703740,-!p1@HOXB9!0.86!6.27!HOXB9;;chr18:19749386..19749404,+!p2@GATA6!0.85!9.00!GATA6;;chr7:63505799..63505904,+!p1@ZNF727!0.85!6.15!ZNF727;;chr11:34642612..34642646,+!p1@EHF!0.85!6.15!EHF;;chr6:45390025..45390076,+!p2@RUNX2!0.84!14.93!RUNX2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!0.84!5.92!SEBOX;;chr6:106534230..106534254,+!p2@PRDM1!0.83!15.38!PRDM1;;chr10:51572339..51572376,+!p4@NCOA4!0.83!13.56!NCOA4;;chr11:125034640..125034655,+!p1@PKNOX2!0.83!5.70!PKNOX2;;chr17:46621146..46621180,-!p10@HOXB2!0.83!5.70!HOXB2;;chr3:101568349..101568365,+!p1@NFKBIZ!0.81!305.71!NFKBIZ;;chr9:4300050..4300118,-!p1@GLIS3!0.81!38.74!GLIS3;;chr18:3450293..3450304,+!p4@TGIF1!0.81!14.36!TGIF1;;chr20:48807779..48807802,+!p10@CEBPB!0.81!9.23!CEBPB;;chr6:106534192..106534224,+!p1@PRDM1!0.80!16.07!PRDM1;;chr6:28321909..28321965,-!p3@ZNF323!0.80!5.36!ZNF323;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.80!5.24!ZNF676;;chr3:71630980..71631110,-!p3@FOXP1!0.78!18.80!FOXP1;;chr6:28321971..28321995,-!p1@ZNF323!0.78!5.01!ZNF323;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.55!FOXD1;;chr8:72756251..72756262,-!p12@MSC!0.76!4.79!MSC;;chr9:73028814..73028895,-!p1@KLF9!0.75!51.27!KLF9;;chr5:124082322..124082364,-!p1@ZNF608!0.75!12.76!ZNF608;;chr5:137801160..137801176,+!p1@EGR1!0.74!501.80!EGR1;;chr3:141087393..141087426,+!p3@ZBTB38!0.74!19.60!ZBTB38;;chr3:193854202..193854232,+!p2@HES1!0.74!4.56!HES1;;chr8:81787006..81787031,-!p2@ZNF704!0.74!4.56!ZNF704;;chr19:35455110..35455149,-!p1@ZNF792!0.73!9.00!ZNF792;;chr6:45390077..45390105,+!p9@RUNX2!0.73!5.81!RUNX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.73!4.67!GLIS1;;chr3:157823517..157823562,-!p1@SHOX2!0.73!4.67!SHOX2;;chr8:49833978..49833996,-!p1@SNAI2!0.72!99.59!SNAI2;;chr20:48599506..48599526,+!p1@SNAI1!0.72!30.42!SNAI1;;chr20:32274150..32274166,-!p2@E2F1!0.72!8.55!E2F1;;chr6:45390269..45390298,+!p5@RUNX2!0.72!7.52!RUNX2;;chr17:46688334..46688385,-!p1@HOXB7!0.72!6.49!HOXB7;;chr3:101546827..101546847,+!p2@NFKBIZ!0.72!6.27!NFKBIZ;;chr17:46621101..46621143,-!p7@HOXB2!0.72!6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;;chr17:2304333..2304364,-!p1@MNT!0.17!17.66!MNT;;chr1:246729544..246729572,-!p1@TFB2M!0.17!12.31!TFB2M;;chr1:67395922..67395976,+!p2@MIER1!0.17!12.31!MIER1;;chr20:18269151..18269212,+!p1@ZNF133!0.17!10.71!ZNF133;;chr5:139487363..139487444,+!p1@PURA!0.17!9.57!PURA;;chr19:55987963..55987996,+!p1@ZNF628!0.17!9.34!ZNF628;;chr10:104155480..104155534,+!p2@NFKB2!0.17!7.98!NFKB2;;chr19:58662139..58662182,-!p1@ZNF329!0.17!5.70!ZNF329;;chr10:35415882..35415941,+!p4@CREM!0.17!5.24!CREM;;chr15:77713025..77713081,+!p2@HMG20A!0.17!5.13!HMG20A;;chr19:37960240..37960299,+!p1@ZNF570!0.17!3.99!ZNF570;;chr3:5020939..5020952,+!p2@BHLHE40!0.17!3.42!BHLHE40;;chr16:29819446..29819471,+!p9@MAZ!0.17!3.19!MAZ;;chr18:45457478..45457517,-!p6@SMAD2!0.17!3.08!SMAD2;;chr12:72057747..72057854,+!p4@THAP2!0.17!2.85!THAP2;;chr8:86089369..86089408,+!p1@E2F5!0.17!2.85!E2F5;;chr19:52674853..52674892,-!p2@ZNF836!0.17!2.73!ZNF836;;chr1:91487774..91487802,-!p2@ZNF644!0.17!2.73!ZNF644;;chr10:35415761..35415800,+!p7@CREM!0.17!2.62!CREM;;chr16:86600426..86600441,+!p1@FOXC2!0.17!2.51!FOXC2;;chr20:25677443..25677464,-!p2@ZNF337!0.17!2.28!ZNF337;;chr3:125094150..125094176,-!p2@ZNF148!0.17!2.16!ZNF148;;chr4:56412767..56412799,-!p3@CLOCK!0.17!2.16!CLOCK;;chr11:67007522..67007533,+!p5@KDM2A!0.17!1.48!KDM2A;;chr9:102584241..102584261,+!p4@NR4A3!0.17!1.25!NR4A3;;chr20:49547554..49547563,-!p6@ADNP!0.17!1.25!ADNP;;chr6:91006575..91006602,-!p2@BACH2!0.17!1.14!BACH2;;chr1:247095286..247095297,-!p4@AHCTF1!0.17!1.03!AHCTF1;;chr20:35201857..35201882,+!p4@TGIF2!0.17!1.03!TGIF2;;chr19:39390652..39390663,+!p3@NFKBIB!0.17!0.91!NFKBIB;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.17!0.91!GLIS2;;chr17:46621311..46621332,-!p8@HOXB2!0.17!0.91!HOXB2;;chrX:119384749..119384763,+!p4@ZBTB33!0.17!0.91!ZBTB33;;chr1:247495210..247495226,-!p4@ZNF496!0.17!0.80!ZNF496;;chr10:22292509..22292523,-!p4@DNAJC1!0.17!0.80!DNAJC1;;chr7:17369649..17369664,+!p4@AHR!0.17!0.80!AHR;;chr20:44600785..44600794,-!p7@ZNF335!0.17!0.68!ZNF335;;chr3:12330560..12330579,+!p1@PPARG!0.17!0.68!PPARG;;chr10:31607702..31607755,+!p3@ZEB1!0.17!0.68!ZEB1;;chr19:37329598..37329605,-!p4@ZNF790!0.17!0.68!ZNF790;;chr3:12329320..12329338,+!p4@PPARG!0.17!0.57!PPARG;;chr2:178129414..178129517,-!p1@NFE2L2!0.16!51.16!NFE2L2;;chr19:6279932..6280000,-!p1@MLLT1!0.16!32.93!MLLT1;;chr2:101436564..101436647,+!p1@NPAS2!0.16!25.86!NPAS2;;chr1:78149041..78149142,-!p1@ZZZ3!0.16!24.73!ZZZ3;;chr5:132299210..132299228,-!p3@AFF4!0.16!14.47!AFF4;;chr11:13299319..13299424,+!p1@ARNTL!0.16!12.65!ARNTL;;chr20:23342783..23342857,+!p1@GZF1!0.16!11.39!GZF1;;chr1:6685228..6685270,+!p1@THAP3!0.16!8.55!THAP3;;chr19:58427951..58427984,-!p1@ZNF417!0.16!8.43!ZNF417;;chr19:37701396..37701453,-!p1@ZNF585B!0.16!6.84!ZNF585B;;chr19:37407212..37407280,+!p1@ZNF568!0.16!4.44!ZNF568;;chr17:41277372..41277418,-!p1@BRCA1!0.16!3.99!BRCA1;;chr2:239148671..239148686,-!p1@HES6!0.16!3.99!HES6;;chr6:12008986..12009016,+!p3@HIVEP1!0.16!3.30!HIVEP1;;chr6:56954867..56954882,+!p2@ZNF451!0.16!3.08!ZNF451;;chr19:45250948..45250998,+!p3@BCL3!0.16!2.51!BCL3;;chrX:153363188..153363203,-!p2@MECP2!0.16!2.28!MECP2;;chr20:48807091..48807123,+!p7@CEBPB!0.16!2.05!CEBPB;;chr3:114343826..114343869,-!p4@ZBTB20!0.16!1.82!ZBTB20;;chr6:15246217..15246228,+!p3@JARID2!0.16!1.48!JARID2;;chr6:170863498..170863514,+!p3@TBP!0.16!1.48!TBP;;chr17:7382891..7382905,-!p7@ZBTB4!0.16!1.37!ZBTB4;;chr4:56413104..56413117,-!p5@CLOCK!0.16!1.14!CLOCK;;chr5:178450829..178450853,+!p2@ZNF879!0.16!1.03!ZNF879;;chr11:67007611..67007622,+!p6@KDM2A!0.16!0.91!KDM2A;;chr21:36260463..36260480,-!p9@RUNX1!0.16!0.91!RUNX1;;
|ffid_belonging_in_development=CL:0000134,CL:0000223,UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316
|fonse_cell_line=FF:0100224,FF:0101120
|fonse_cell_line=FF:0100224,FF:0101120
|fonse_cell_line_closure=FF:0100224,FF:0101120
|fonse_cell_line_closure=FF:0100224,FF:0101120
Line 35: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cholangiocellular%2520carcinoma%2520cell%2520line%253aHuH-28.CNhs11283.10536-107G5.hg38.nobarcode.ctss.bed.gz
|id=FF:10536-107G5
|id=FF:10536-107G5
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0102842
|is_a=EFO:0002091;;FF:0000210;;FF:0102842
|is_obsolete=
|library_id=CNhs11283
|library_id_phase_based=2:CNhs11283
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10536
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10536
|name=cholangiocellular carcinoma cell line:HuH-28
|name=cholangiocellular carcinoma cell line:HuH-28
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11283,LSID759,release008,COMPLETED
|profile_hcage=CNhs11283,LSID759,release008,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.081546117668347,0,0.233953078543147,0,0,0.234351920972427,0,-0.147137041216358,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0641656305357917,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.394669951058813,0,0.0566903091848404,0,0.0468626006398675,0,0,0,0,0,0,0.118273419921518,0,0,0,0,0,0,0,-0.0501297606027376,0,0,-0.0504810265732294,0,0,0,0,0,0,0,0.00577174044020169,0,0,0,0,0,0.127696256989732,0,0,0,0.0468626006398675,0.0234313003199337,0,0.00301639002342453,0,0,0,0,0,0,0,0.0638384342705606,0.0916282065455687,0,0.35283108463337,0.0979097511280345,0.374254154868731,-0.00887797142507053,-0.0938985108945775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.051794904016143,0.0891573798126359,0,0,0,0.0369901759700026,0,0,0,0,0,0
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|rna_box=107
|rna_box=107
|rna_catalog_number=
|rna_catalog_number=
Line 57: Line 78:
|rna_weight_ug=18.01345
|rna_weight_ug=18.01345
|sample_age=
|sample_age=
|sample_category=cell lines
|sample_cell_catalog=RCB1943
|sample_cell_catalog=RCB1943
|sample_cell_line=HuH-28
|sample_cell_line=HuH-28
Line 69: Line 91:
|sample_ethnicity=
|sample_ethnicity=
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.30183609737789e-224!GO:0043231;intracellular membrane-bound organelle;2.15707028481906e-189!GO:0043227;membrane-bound organelle;3.47264565818642e-189!GO:0043226;organelle;4.13850513820046e-185!GO:0043229;intracellular organelle;1.1352475096408e-184!GO:0005737;cytoplasm;4.23432094579142e-175!GO:0044422;organelle part;2.64069128817468e-135!GO:0044446;intracellular organelle part;8.96215622281704e-134!GO:0044444;cytoplasmic part;1.10723616704359e-129!GO:0032991;macromolecular complex;1.19035699466658e-94!GO:0044237;cellular metabolic process;1.50898105887377e-89!GO:0044238;primary metabolic process;5.81694444068021e-88!GO:0043170;macromolecule metabolic process;1.40324199731991e-83!GO:0005515;protein binding;2.44646826062566e-81!GO:0030529;ribonucleoprotein complex;1.58383024663895e-79!GO:0005634;nucleus;4.93520263146062e-75!GO:0044428;nuclear part;1.41952616208668e-71!GO:0043233;organelle lumen;3.76579486260492e-71!GO:0031974;membrane-enclosed lumen;3.76579486260492e-71!GO:0003723;RNA binding;1.31199200646746e-66!GO:0005739;mitochondrion;2.88374628298495e-59!GO:0031090;organelle membrane;7.20547343085749e-53!GO:0019538;protein metabolic process;9.50203633496844e-52!GO:0043283;biopolymer metabolic process;3.05251826858108e-50!GO:0016043;cellular component organization and biogenesis;2.07821463379355e-49!GO:0033036;macromolecule localization;1.92196556131058e-48!GO:0043234;protein complex;2.69794824123829e-48!GO:0044260;cellular macromolecule metabolic process;3.69406447862231e-47!GO:0006396;RNA processing;3.93907471079345e-47!GO:0044267;cellular protein metabolic process;6.26115741022464e-47!GO:0015031;protein transport;1.92475100687071e-46!GO:0006412;translation;2.22262484837246e-45!GO:0005840;ribosome;1.18953793109252e-44!GO:0008104;protein localization;3.53613336276919e-44!GO:0045184;establishment of protein localization;6.29823110009624e-44!GO:0010467;gene expression;3.69657512981052e-43!GO:0031981;nuclear lumen;1.00351626059336e-42!GO:0044429;mitochondrial part;3.22925538114287e-41!GO:0016071;mRNA metabolic process;1.91241487116522e-39!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.49937314801657e-39!GO:0003735;structural constituent of ribosome;1.77338362759887e-38!GO:0031967;organelle envelope;2.17859640205331e-38!GO:0031975;envelope;2.55609326994902e-38!GO:0005829;cytosol;2.56028014728085e-37!GO:0046907;intracellular transport;2.47278310804623e-36!GO:0009058;biosynthetic process;4.50259322575998e-35!GO:0008380;RNA splicing;6.91112231959485e-35!GO:0009059;macromolecule biosynthetic process;1.66763116875695e-34!GO:0033279;ribosomal subunit;5.10269996200441e-34!GO:0044249;cellular biosynthetic process;1.39444089153612e-33!GO:0006397;mRNA processing;1.76220933129527e-33!GO:0006886;intracellular protein transport;1.24283558141135e-31!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.411485787372e-28!GO:0065003;macromolecular complex assembly;3.58251834259187e-28!GO:0005740;mitochondrial envelope;1.35233174869225e-26!GO:0005654;nucleoplasm;1.84431509431496e-26!GO:0006996;organelle organization and biogenesis;3.54624505438396e-25!GO:0005681;spliceosome;4.02630686316823e-25!GO:0031966;mitochondrial membrane;5.84688802371998e-25!GO:0022607;cellular component assembly;6.31738525404382e-25!GO:0051649;establishment of cellular localization;4.70449388841897e-24!GO:0019866;organelle inner membrane;5.21184840780666e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.40497142679318e-24!GO:0043228;non-membrane-bound organelle;1.43586534150018e-23!GO:0043232;intracellular non-membrane-bound organelle;1.43586534150018e-23!GO:0051641;cellular localization;1.5249940875629e-23!GO:0012505;endomembrane system;3.64408253737453e-23!GO:0006119;oxidative phosphorylation;6.63542690060409e-23!GO:0006259;DNA metabolic process;1.60380168881659e-22!GO:0005743;mitochondrial inner membrane;2.9492846233357e-22!GO:0000166;nucleotide binding;5.2141772462853e-22!GO:0044451;nucleoplasm part;1.34905905830723e-21!GO:0003676;nucleic acid binding;2.14107837049415e-21!GO:0005783;endoplasmic reticulum;2.80233631653109e-21!GO:0044445;cytosolic part;1.97570481702384e-20!GO:0006457;protein folding;2.104797199424e-20!GO:0006512;ubiquitin cycle;2.93276803832462e-20!GO:0007049;cell cycle;3.59141061356016e-20!GO:0016070;RNA metabolic process;4.02347350269684e-20!GO:0016462;pyrophosphatase activity;6.66931600554267e-20!GO:0043285;biopolymer catabolic process;7.30456901808449e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.03928561466091e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;1.67837720580158e-19!GO:0017111;nucleoside-triphosphatase activity;1.78372075768191e-19!GO:0044455;mitochondrial membrane part;5.61884278458276e-19!GO:0016874;ligase activity;5.6929544254075e-19!GO:0008134;transcription factor binding;6.44871102299343e-19!GO:0009057;macromolecule catabolic process;2.11379521883703e-18!GO:0044265;cellular macromolecule catabolic process;3.80232151549811e-18!GO:0030163;protein catabolic process;4.60700837145283e-18!GO:0048770;pigment granule;5.20397032298537e-18!GO:0042470;melanosome;5.20397032298537e-18!GO:0000502;proteasome complex (sensu Eukaryota);6.71959678783674e-18!GO:0044432;endoplasmic reticulum part;8.43341502676058e-18!GO:0015935;small ribosomal subunit;1.1186546996424e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.25741907467823e-17!GO:0015934;large ribosomal subunit;2.15038294399747e-17!GO:0019941;modification-dependent protein catabolic process;2.5767871825293e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.5767871825293e-17!GO:0022618;protein-RNA complex assembly;3.4998951847928e-17!GO:0005730;nucleolus;3.65623637453996e-17!GO:0044257;cellular protein catabolic process;4.16271588005707e-17!GO:0006511;ubiquitin-dependent protein catabolic process;4.55656780747122e-17!GO:0031980;mitochondrial lumen;6.15688432504944e-17!GO:0005759;mitochondrial matrix;6.15688432504944e-17!GO:0005794;Golgi apparatus;3.30466432724322e-16!GO:0005746;mitochondrial respiratory chain;3.59211793882526e-16!GO:0006605;protein targeting;4.42166312842461e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.67088829455761e-16!GO:0051082;unfolded protein binding;6.14397617125263e-16!GO:0048193;Golgi vesicle transport;3.15417230348803e-15!GO:0032553;ribonucleotide binding;3.32459591862946e-15!GO:0032555;purine ribonucleotide binding;3.32459591862946e-15!GO:0012501;programmed cell death;4.24067298181889e-15!GO:0017076;purine nucleotide binding;6.612657425968e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.84707841261401e-15!GO:0003954;NADH dehydrogenase activity;6.84707841261401e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.84707841261401e-15!GO:0006974;response to DNA damage stimulus;7.75395108351216e-15!GO:0006915;apoptosis;1.03697698453842e-14!GO:0016192;vesicle-mediated transport;1.29584993392048e-14!GO:0051186;cofactor metabolic process;1.39879505587572e-14!GO:0043412;biopolymer modification;1.64163131667794e-14!GO:0044248;cellular catabolic process;2.2324239842902e-14!GO:0008135;translation factor activity, nucleic acid binding;3.19532928266657e-14!GO:0008219;cell death;6.43262566399487e-14!GO:0016265;death;6.43262566399487e-14!GO:0022402;cell cycle process;6.91856883136038e-14!GO:0005761;mitochondrial ribosome;2.44734627206288e-13!GO:0000313;organellar ribosome;2.44734627206288e-13!GO:0042775;organelle ATP synthesis coupled electron transport;3.94393735735682e-13!GO:0042773;ATP synthesis coupled electron transport;3.94393735735682e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.4750956307408e-13!GO:0006464;protein modification process;6.82137572734705e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.82137572734705e-13!GO:0045271;respiratory chain complex I;6.82137572734705e-13!GO:0005747;mitochondrial respiratory chain complex I;6.82137572734705e-13!GO:0006913;nucleocytoplasmic transport;9.52433647495427e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.40669323533424e-12!GO:0000375;RNA splicing, via transesterification reactions;1.40669323533424e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.40669323533424e-12!GO:0005635;nuclear envelope;1.45093782545518e-12!GO:0005789;endoplasmic reticulum membrane;1.64877726813402e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.69616884960974e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.09345727675647e-12!GO:0051169;nuclear transport;2.17704649451352e-12!GO:0006281;DNA repair;2.39358880663507e-12!GO:0042254;ribosome biogenesis and assembly;2.95955402978441e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.76632657338459e-12!GO:0000278;mitotic cell cycle;6.91241554748503e-12!GO:0031965;nuclear membrane;8.69028068826675e-12!GO:0005524;ATP binding;9.84348940719886e-12!GO:0032559;adenyl ribonucleotide binding;1.1148822606948e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.18508968295621e-11!GO:0003712;transcription cofactor activity;1.35198425593742e-11!GO:0006732;coenzyme metabolic process;1.55783695772061e-11!GO:0030554;adenyl nucleotide binding;2.78759590800182e-11!GO:0043687;post-translational protein modification;4.32823635866941e-11!GO:0006260;DNA replication;5.71652458935229e-11!GO:0016887;ATPase activity;7.29867448534936e-11!GO:0005793;ER-Golgi intermediate compartment;8.8976076551461e-11!GO:0016604;nuclear body;9.66348373860235e-11!GO:0003743;translation initiation factor activity;1.12099006479967e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.24008146276031e-10!GO:0005768;endosome;1.35480244365152e-10!GO:0008639;small protein conjugating enzyme activity;1.68293301072653e-10!GO:0044453;nuclear membrane part;1.75913549468538e-10!GO:0006366;transcription from RNA polymerase II promoter;2.64082161128308e-10!GO:0042623;ATPase activity, coupled;2.73760346764446e-10!GO:0019787;small conjugating protein ligase activity;3.0576310226278e-10!GO:0009719;response to endogenous stimulus;3.21974864240161e-10!GO:0017038;protein import;3.9336680970776e-10!GO:0004842;ubiquitin-protein ligase activity;4.00578656417525e-10!GO:0050794;regulation of cellular process;4.07533316888815e-10!GO:0009056;catabolic process;5.37553128583106e-10!GO:0009055;electron carrier activity;5.40063397168229e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.24072664547642e-10!GO:0006413;translational initiation;7.71890471159731e-10!GO:0008565;protein transporter activity;8.29473207465076e-10!GO:0009259;ribonucleotide metabolic process;1.38796838917027e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.42891950749763e-09!GO:0051726;regulation of cell cycle;1.45800173659947e-09!GO:0006399;tRNA metabolic process;1.51879339651974e-09!GO:0016607;nuclear speck;2.10360266271133e-09!GO:0016881;acid-amino acid ligase activity;2.74029850022369e-09!GO:0000074;regulation of progression through cell cycle;2.8618868079264e-09!GO:0015986;ATP synthesis coupled proton transport;4.80991295329507e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.80991295329507e-09!GO:0043067;regulation of programmed cell death;5.21171168406534e-09!GO:0048523;negative regulation of cellular process;5.26908033049111e-09!GO:0042981;regulation of apoptosis;5.36964663705919e-09!GO:0006446;regulation of translational initiation;6.5461383058048e-09!GO:0006403;RNA localization;6.6018049007881e-09!GO:0050657;nucleic acid transport;6.77594338808151e-09!GO:0051236;establishment of RNA localization;6.77594338808151e-09!GO:0050658;RNA transport;6.77594338808151e-09!GO:0006163;purine nucleotide metabolic process;6.80070025467873e-09!GO:0006461;protein complex assembly;7.61853752767878e-09!GO:0009150;purine ribonucleotide metabolic process;1.04072191619141e-08!GO:0005643;nuclear pore;1.08525693995456e-08!GO:0009260;ribonucleotide biosynthetic process;1.1664108702888e-08!GO:0051188;cofactor biosynthetic process;1.76402093513648e-08!GO:0006164;purine nucleotide biosynthetic process;1.98940399989324e-08!GO:0019829;cation-transporting ATPase activity;2.1608212417672e-08!GO:0005694;chromosome;2.24431788523953e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.9019136106097e-08!GO:0022403;cell cycle phase;3.29087584806172e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.86650518053656e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.86650518053656e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.86650518053656e-08!GO:0005839;proteasome core complex (sensu Eukaryota);4.74810130741203e-08!GO:0043069;negative regulation of programmed cell death;5.12669056718503e-08!GO:0009199;ribonucleoside triphosphate metabolic process;5.42838315455759e-08!GO:0009060;aerobic respiration;5.56092994068865e-08!GO:0006364;rRNA processing;5.95057842404155e-08!GO:0006888;ER to Golgi vesicle-mediated transport;6.96490435032432e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.25629057874904e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.25629057874904e-08!GO:0044440;endosomal part;7.49621508477119e-08!GO:0010008;endosome membrane;7.49621508477119e-08!GO:0009141;nucleoside triphosphate metabolic process;7.52518792497247e-08!GO:0065002;intracellular protein transport across a membrane;7.89237127985505e-08!GO:0006754;ATP biosynthetic process;8.6233994609656e-08!GO:0006753;nucleoside phosphate metabolic process;8.6233994609656e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.36968625967335e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.36968625967335e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.79116104960859e-08!GO:0046034;ATP metabolic process;9.8651558851425e-08!GO:0016072;rRNA metabolic process;9.95813454953663e-08!GO:0043038;amino acid activation;1.02440447091886e-07!GO:0006418;tRNA aminoacylation for protein translation;1.02440447091886e-07!GO:0043039;tRNA aminoacylation;1.02440447091886e-07!GO:0044431;Golgi apparatus part;1.11557328492648e-07!GO:0051301;cell division;1.12254475453987e-07!GO:0043066;negative regulation of apoptosis;1.13614524476718e-07!GO:0051276;chromosome organization and biogenesis;1.20077182720831e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.24777533032083e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.24777533032083e-07!GO:0045333;cellular respiration;1.35951951058593e-07!GO:0004386;helicase activity;1.41897908209758e-07!GO:0005788;endoplasmic reticulum lumen;1.45310370542749e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.48148967928185e-07!GO:0046930;pore complex;1.59695358583885e-07!GO:0008026;ATP-dependent helicase activity;1.61867478343484e-07!GO:0005770;late endosome;1.85291793360057e-07!GO:0006606;protein import into nucleus;1.87476376890682e-07!GO:0031324;negative regulation of cellular metabolic process;1.9977869913579e-07!GO:0044427;chromosomal part;2.09165193201209e-07!GO:0048519;negative regulation of biological process;2.28123858596385e-07!GO:0003924;GTPase activity;2.36489901644106e-07!GO:0051170;nuclear import;2.52441242419891e-07!GO:0051246;regulation of protein metabolic process;2.77554110971912e-07!GO:0016564;transcription repressor activity;2.86786153626557e-07!GO:0016787;hydrolase activity;2.96509752647452e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.96509752647452e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.46590421126881e-07!GO:0000087;M phase of mitotic cell cycle;3.52221591268639e-07!GO:0004298;threonine endopeptidase activity;3.55321416410541e-07!GO:0003714;transcription corepressor activity;3.86648768763535e-07!GO:0051028;mRNA transport;3.88636694317423e-07!GO:0050789;regulation of biological process;4.47264681043383e-07!GO:0005667;transcription factor complex;4.98034439469526e-07!GO:0009108;coenzyme biosynthetic process;5.02149964601031e-07!GO:0007067;mitosis;5.39400430507406e-07!GO:0032446;protein modification by small protein conjugation;5.59688720253665e-07!GO:0065004;protein-DNA complex assembly;6.58169958992029e-07!GO:0007005;mitochondrion organization and biogenesis;7.13975324649095e-07!GO:0005773;vacuole;7.21607070776246e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.21607070776246e-07!GO:0016567;protein ubiquitination;7.59710511380947e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.2808105801097e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;8.58073635937302e-07!GO:0006916;anti-apoptosis;9.97958305432448e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.07574074074292e-06!GO:0048475;coated membrane;1.39967011738843e-06!GO:0030117;membrane coat;1.39967011738843e-06!GO:0043566;structure-specific DNA binding;1.39967011738843e-06!GO:0006099;tricarboxylic acid cycle;1.6557811127218e-06!GO:0046356;acetyl-CoA catabolic process;1.6557811127218e-06!GO:0003697;single-stranded DNA binding;1.70571292209163e-06!GO:0006323;DNA packaging;1.96527260504725e-06!GO:0043623;cellular protein complex assembly;2.25275651091546e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.30900844457081e-06!GO:0000151;ubiquitin ligase complex;2.95488632990742e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.0726448123706e-06!GO:0000245;spliceosome assembly;3.09831843964808e-06!GO:0006752;group transfer coenzyme metabolic process;3.2322267505853e-06!GO:0006793;phosphorus metabolic process;4.0904956216741e-06!GO:0006796;phosphate metabolic process;4.0904956216741e-06!GO:0045259;proton-transporting ATP synthase complex;4.49931410287896e-06!GO:0005769;early endosome;4.68569936680536e-06!GO:0006084;acetyl-CoA metabolic process;4.99594519430029e-06!GO:0005525;GTP binding;5.10792601574995e-06!GO:0045786;negative regulation of progression through cell cycle;5.10792601574995e-06!GO:0019222;regulation of metabolic process;6.15697796524163e-06!GO:0016023;cytoplasmic membrane-bound vesicle;7.11323174953613e-06!GO:0031988;membrane-bound vesicle;7.27356574447552e-06!GO:0051329;interphase of mitotic cell cycle;7.27356574447552e-06!GO:0051325;interphase;7.47442636713331e-06!GO:0030120;vesicle coat;7.48574833244925e-06!GO:0030662;coated vesicle membrane;7.48574833244925e-06!GO:0006613;cotranslational protein targeting to membrane;8.34602668638504e-06!GO:0005798;Golgi-associated vesicle;8.81995521837434e-06!GO:0007243;protein kinase cascade;8.98023734299007e-06!GO:0016044;membrane organization and biogenesis;9.34028284155509e-06!GO:0009117;nucleotide metabolic process;9.57537014382444e-06!GO:0009892;negative regulation of metabolic process;9.59557034098671e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.09854662271366e-05!GO:0031982;vesicle;1.09854662271366e-05!GO:0015630;microtubule cytoskeleton;1.13416215834801e-05!GO:0000323;lytic vacuole;1.21100805512832e-05!GO:0005764;lysosome;1.21100805512832e-05!GO:0051427;hormone receptor binding;1.22175703947111e-05!GO:0051789;response to protein stimulus;1.24277072776376e-05!GO:0006986;response to unfolded protein;1.24277072776376e-05!GO:0008654;phospholipid biosynthetic process;1.25979937925378e-05!GO:0031410;cytoplasmic vesicle;1.38090455369739e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.38413956412577e-05!GO:0051187;cofactor catabolic process;1.41308029919731e-05!GO:0000139;Golgi membrane;1.5852394637445e-05!GO:0016310;phosphorylation;1.63680319066381e-05!GO:0045454;cell redox homeostasis;1.7144188919748e-05!GO:0009109;coenzyme catabolic process;2.16378563092343e-05!GO:0008361;regulation of cell size;2.18451769479674e-05!GO:0031252;leading edge;2.20685519099513e-05!GO:0006091;generation of precursor metabolites and energy;2.38016036897595e-05!GO:0035257;nuclear hormone receptor binding;2.64667645162779e-05!GO:0048522;positive regulation of cellular process;2.90109315496446e-05!GO:0032561;guanyl ribonucleotide binding;3.22769049470445e-05!GO:0019001;guanyl nucleotide binding;3.22769049470445e-05!GO:0003713;transcription coactivator activity;3.39488415808518e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.42524325930496e-05!GO:0016568;chromatin modification;3.62627990271927e-05!GO:0030867;rough endoplasmic reticulum membrane;3.89604151098407e-05!GO:0006261;DNA-dependent DNA replication;4.23001878659023e-05!GO:0016049;cell growth;4.37658025615899e-05!GO:0005762;mitochondrial large ribosomal subunit;4.4192967902812e-05!GO:0000315;organellar large ribosomal subunit;4.4192967902812e-05!GO:0016481;negative regulation of transcription;5.10757810853386e-05!GO:0016740;transferase activity;5.46586193427349e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.97042880904814e-05!GO:0000279;M phase;7.31409544203126e-05!GO:0006333;chromatin assembly or disassembly;8.28200830929041e-05!GO:0016563;transcription activator activity;8.50082889315113e-05!GO:0001558;regulation of cell growth;8.53225975524623e-05!GO:0006612;protein targeting to membrane;8.62950938893272e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.80087537240379e-05!GO:0003724;RNA helicase activity;0.000103436053268707!GO:0016779;nucleotidyltransferase activity;0.000108982175874993!GO:0043021;ribonucleoprotein binding;0.000109163320002054!GO:0051168;nuclear export;0.00011984372432482!GO:0003729;mRNA binding;0.000125539844137263!GO:0000785;chromatin;0.000128272485839788!GO:0046489;phosphoinositide biosynthetic process;0.000129574799003849!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000135167762771179!GO:0005657;replication fork;0.000145165055113499!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000173828048694546!GO:0016859;cis-trans isomerase activity;0.000193789346803817!GO:0005791;rough endoplasmic reticulum;0.000223332275281053!GO:0008250;oligosaccharyl transferase complex;0.000224563746723428!GO:0006352;transcription initiation;0.000227176211437106!GO:0019867;outer membrane;0.000236663031589904!GO:0004576;oligosaccharyl transferase activity;0.000237151039199461!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000247932959514825!GO:0031968;organelle outer membrane;0.000250366334656138!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000276989315862589!GO:0015399;primary active transmembrane transporter activity;0.000276989315862589!GO:0046474;glycerophospholipid biosynthetic process;0.000308098509420426!GO:0016363;nuclear matrix;0.000312114425559471!GO:0000314;organellar small ribosomal subunit;0.000312854780995668!GO:0005763;mitochondrial small ribosomal subunit;0.000312854780995668!GO:0005813;centrosome;0.00032071663880884!GO:0030176;integral to endoplasmic reticulum membrane;0.00036443083485535!GO:0031072;heat shock protein binding;0.000378055587118243!GO:0019899;enzyme binding;0.000380543022093826!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000409977061364019!GO:0031323;regulation of cellular metabolic process;0.000473860971953278!GO:0015980;energy derivation by oxidation of organic compounds;0.000482305574638519!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00050214031934753!GO:0005815;microtubule organizing center;0.000554866424778413!GO:0016491;oxidoreductase activity;0.000557603413649348!GO:0005048;signal sequence binding;0.000561321162734701!GO:0005741;mitochondrial outer membrane;0.000593522827498822!GO:0003690;double-stranded DNA binding;0.000631503475518086!GO:0005885;Arp2/3 protein complex;0.000632399056055127!GO:0006891;intra-Golgi vesicle-mediated transport;0.000655451459345713!GO:0031902;late endosome membrane;0.000698058808456099!GO:0016853;isomerase activity;0.00074617901001835!GO:0003899;DNA-directed RNA polymerase activity;0.000749756209502203!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000830157859855754!GO:0065007;biological regulation;0.000860140546752852!GO:0030521;androgen receptor signaling pathway;0.000929780575527164!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000946371923058681!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000964240792233374!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000994860575658728!GO:0009165;nucleotide biosynthetic process;0.00101385084702204!GO:0006414;translational elongation;0.00114968328973425!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00137509420984895!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00137509420984895!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00137509420984895!GO:0008186;RNA-dependent ATPase activity;0.00145096302838385!GO:0048487;beta-tubulin binding;0.00147011439682897!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00154598271965451!GO:0005774;vacuolar membrane;0.00155374016204811!GO:0006402;mRNA catabolic process;0.00166144176340538!GO:0035258;steroid hormone receptor binding;0.00168793088981138!GO:0000059;protein import into nucleus, docking;0.00175328475864609!GO:0048518;positive regulation of biological process;0.00175412189076692!GO:0007040;lysosome organization and biogenesis;0.00175493203920231!GO:0018196;peptidyl-asparagine modification;0.00177040502811726!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00177040502811726!GO:0003711;transcription elongation regulator activity;0.00183896999859647!GO:0030384;phosphoinositide metabolic process;0.00184434065106643!GO:0043681;protein import into mitochondrion;0.00184915686277453!GO:0007051;spindle organization and biogenesis;0.00193481829038283!GO:0051052;regulation of DNA metabolic process;0.00193481829038283!GO:0040008;regulation of growth;0.00196858640904339!GO:0048468;cell development;0.00197312435783857!GO:0016272;prefoldin complex;0.00198898743893205!GO:0030518;steroid hormone receptor signaling pathway;0.00198952380092423!GO:0006897;endocytosis;0.0020147722688069!GO:0010324;membrane invagination;0.0020147722688069!GO:0006626;protein targeting to mitochondrion;0.0020147722688069!GO:0006950;response to stress;0.0020147722688069!GO:0048471;perinuclear region of cytoplasm;0.00202112930655993!GO:0006350;transcription;0.00202112930655993!GO:0005905;coated pit;0.00211621815806102!GO:0043433;negative regulation of transcription factor activity;0.00212443267012373!GO:0000049;tRNA binding;0.00212593453006076!GO:0006383;transcription from RNA polymerase III promoter;0.00221888816861961!GO:0006506;GPI anchor biosynthetic process;0.00246687704508963!GO:0008033;tRNA processing;0.00249169807226329!GO:0006818;hydrogen transport;0.00250807308075848!GO:0006839;mitochondrial transport;0.00253074132662145!GO:0046467;membrane lipid biosynthetic process;0.0025979132158234!GO:0007050;cell cycle arrest;0.00262233862245839!GO:0006650;glycerophospholipid metabolic process;0.00265696031262775!GO:0051540;metal cluster binding;0.00274929061136316!GO:0051536;iron-sulfur cluster binding;0.00274929061136316!GO:0000082;G1/S transition of mitotic cell cycle;0.00282455102971971!GO:0043492;ATPase activity, coupled to movement of substances;0.00296274607973316!GO:0048500;signal recognition particle;0.0030105968735959!GO:0007006;mitochondrial membrane organization and biogenesis;0.0031093282224813!GO:0044262;cellular carbohydrate metabolic process;0.00328471362799235!GO:0030133;transport vesicle;0.00341048800037396!GO:0030132;clathrin coat of coated pit;0.00350563954054882!GO:0006505;GPI anchor metabolic process;0.00353701413677948!GO:0051087;chaperone binding;0.00354335152225313!GO:0051059;NF-kappaB binding;0.00355380837318673!GO:0015992;proton transport;0.00365473280171744!GO:0065009;regulation of a molecular function;0.00371332020482811!GO:0004004;ATP-dependent RNA helicase activity;0.00371332020482811!GO:0006302;double-strand break repair;0.00380012372154328!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00381410463549981!GO:0045892;negative regulation of transcription, DNA-dependent;0.00409280291023182!GO:0030137;COPI-coated vesicle;0.00412937415686025!GO:0007033;vacuole organization and biogenesis;0.0041838018260037!GO:0000075;cell cycle checkpoint;0.00424027953982102!GO:0006334;nucleosome assembly;0.00429684662038755!GO:0006892;post-Golgi vesicle-mediated transport;0.00430080677354723!GO:0044437;vacuolar part;0.00438981055165194!GO:0043065;positive regulation of apoptosis;0.00447902287531553!GO:0008312;7S RNA binding;0.00448996915604629!GO:0016251;general RNA polymerase II transcription factor activity;0.00456422843638153!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00470086057584356!GO:0045047;protein targeting to ER;0.00470086057584356!GO:0006497;protein amino acid lipidation;0.00477109551290278!GO:0031901;early endosome membrane;0.00482093376704978!GO:0031497;chromatin assembly;0.00490333317750926!GO:0005819;spindle;0.00490333317750926!GO:0019843;rRNA binding;0.00494915354318192!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00495465796725824!GO:0004667;prostaglandin-D synthase activity;0.00495465796725824!GO:0050802;circadian sleep/wake cycle, sleep;0.00495465796725824!GO:0022410;circadian sleep/wake cycle process;0.00495465796725824!GO:0042749;regulation of circadian sleep/wake cycle;0.00495465796725824!GO:0050681;androgen receptor binding;0.00495465796725824!GO:0005765;lysosomal membrane;0.00498784649672644!GO:0043068;positive regulation of programmed cell death;0.00527088817699983!GO:0003746;translation elongation factor activity;0.00531012742976295!GO:0030880;RNA polymerase complex;0.00536419383277013!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00537118196553309!GO:0008139;nuclear localization sequence binding;0.00539779638066359!GO:0045045;secretory pathway;0.00563625653079386!GO:0007010;cytoskeleton organization and biogenesis;0.00571004425039477!GO:0044452;nucleolar part;0.00572073893465275!GO:0045936;negative regulation of phosphate metabolic process;0.00634405690398212!GO:0008383;manganese superoxide dismutase activity;0.00637150421144443!GO:0001315;age-dependent response to reactive oxygen species;0.00637150421144443!GO:0006672;ceramide metabolic process;0.006469267570089!GO:0030663;COPI coated vesicle membrane;0.00655589147485386!GO:0030126;COPI vesicle coat;0.00655589147485386!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00667944192874263!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00667944192874263!GO:0006401;RNA catabolic process;0.006763363768427!GO:0042802;identical protein binding;0.00678527364994724!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00693241096553458!GO:0051252;regulation of RNA metabolic process;0.00708061653655382!GO:0001726;ruffle;0.00719036062535737!GO:0003682;chromatin binding;0.00736652525978502!GO:0010468;regulation of gene expression;0.00737012207157227!GO:0006405;RNA export from nucleus;0.00786799244374019!GO:0046519;sphingoid metabolic process;0.00794741244657288!GO:0030134;ER to Golgi transport vesicle;0.00804157985755!GO:0015631;tubulin binding;0.0080725769729605!GO:0003684;damaged DNA binding;0.00809187721439251!GO:0016197;endosome transport;0.00810205126907437!GO:0043022;ribosome binding;0.00812760285057381!GO:0043284;biopolymer biosynthetic process;0.00818789785163635!GO:0030659;cytoplasmic vesicle membrane;0.00828923139098443!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00875832172134297!GO:0045792;negative regulation of cell size;0.0088442360306667!GO:0006509;membrane protein ectodomain proteolysis;0.00894506708346087!GO:0033619;membrane protein proteolysis;0.00894506708346087!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00894506708346087!GO:0008092;cytoskeletal protein binding;0.00905182242793739!GO:0030036;actin cytoskeleton organization and biogenesis;0.00928314750236205!GO:0030118;clathrin coat;0.00935939611120565!GO:0033673;negative regulation of kinase activity;0.00941058139742408!GO:0006469;negative regulation of protein kinase activity;0.00941058139742408!GO:0007034;vacuolar transport;0.00947329276685213!GO:0051539;4 iron, 4 sulfur cluster binding;0.00947887641851675!GO:0003678;DNA helicase activity;0.00980682716502724!GO:0042158;lipoprotein biosynthetic process;0.00997891684757365!GO:0009967;positive regulation of signal transduction;0.0101435184560419!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0102004739287929!GO:0000428;DNA-directed RNA polymerase complex;0.0102004739287929!GO:0030522;intracellular receptor-mediated signaling pathway;0.0104921608822609!GO:0005637;nuclear inner membrane;0.0108739773130586!GO:0031301;integral to organelle membrane;0.010965919016643!GO:0046822;regulation of nucleocytoplasmic transport;0.0110304509312109!GO:0043488;regulation of mRNA stability;0.0110524223869161!GO:0043487;regulation of RNA stability;0.0110524223869161!GO:0030027;lamellipodium;0.0111018534496698!GO:0030308;negative regulation of cell growth;0.0114586792137266!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0114586792137266!GO:0015002;heme-copper terminal oxidase activity;0.0114586792137266!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0114586792137266!GO:0004129;cytochrome-c oxidase activity;0.0114586792137266!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0116791910465339!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0117890537466727!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0118850411408886!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0120494535108075!GO:0006611;protein export from nucleus;0.0121934235373864!GO:0005869;dynactin complex;0.0122968008461587!GO:0005684;U2-dependent spliceosome;0.012379750870556!GO:0006376;mRNA splice site selection;0.0123980234063364!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0123980234063364!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0123980234063364!GO:0046483;heterocycle metabolic process;0.0131051970970703!GO:0030119;AP-type membrane coat adaptor complex;0.0133777809010242!GO:0042326;negative regulation of phosphorylation;0.0136321329256698!GO:0005832;chaperonin-containing T-complex;0.0138235333926828!GO:0031124;mRNA 3'-end processing;0.0143408794714353!GO:0008094;DNA-dependent ATPase activity;0.0146224161857894!GO:0006643;membrane lipid metabolic process;0.0146529132675876!GO:0051348;negative regulation of transferase activity;0.0147329470328634!GO:0031625;ubiquitin protein ligase binding;0.0152904405433757!GO:0022890;inorganic cation transmembrane transporter activity;0.0153400673327265!GO:0044433;cytoplasmic vesicle part;0.0157474585490348!GO:0032508;DNA duplex unwinding;0.0158167513859355!GO:0032392;DNA geometric change;0.0158167513859355!GO:0000287;magnesium ion binding;0.0158340780177519!GO:0030658;transport vesicle membrane;0.0163030021339586!GO:0045893;positive regulation of transcription, DNA-dependent;0.0163599696711652!GO:0006595;polyamine metabolic process;0.0165320840434054!GO:0006289;nucleotide-excision repair;0.0169261587592161!GO:0043596;nuclear replication fork;0.0169261587592161!GO:0003923;GPI-anchor transamidase activity;0.0170560931249322!GO:0016255;attachment of GPI anchor to protein;0.0170560931249322!GO:0042765;GPI-anchor transamidase complex;0.0170560931249322!GO:0051101;regulation of DNA binding;0.0173203720051055!GO:0004860;protein kinase inhibitor activity;0.0173600753833672!GO:0043624;cellular protein complex disassembly;0.017420776972094!GO:0007021;tubulin folding;0.017420776972094!GO:0008632;apoptotic program;0.017420776972094!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0175940023887221!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0181467492086133!GO:0050811;GABA receptor binding;0.0181713658837841!GO:0047485;protein N-terminus binding;0.0181713658837841!GO:0030127;COPII vesicle coat;0.0181713658837841!GO:0012507;ER to Golgi transport vesicle membrane;0.0181713658837841!GO:0051920;peroxiredoxin activity;0.0183256027503093!GO:0046966;thyroid hormone receptor binding;0.0188472712322617!GO:0030131;clathrin adaptor complex;0.0189584501532161!GO:0004674;protein serine/threonine kinase activity;0.0191299248235611!GO:0004185;serine carboxypeptidase activity;0.0191342356083051!GO:0005874;microtubule;0.0191931491013172!GO:0007264;small GTPase mediated signal transduction;0.019244176930728!GO:0008180;signalosome;0.0197675502950782!GO:0005669;transcription factor TFIID complex;0.0198357637293608!GO:0006607;NLS-bearing substrate import into nucleus;0.0199116612574249!GO:0000096;sulfur amino acid metabolic process;0.0212455882253763!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0214307735172839!GO:0035035;histone acetyltransferase binding;0.0220999124772237!GO:0046983;protein dimerization activity;0.0225662131621914!GO:0005138;interleukin-6 receptor binding;0.0228482801281901!GO:0006417;regulation of translation;0.0230727258961314!GO:0006378;mRNA polyadenylation;0.0230727258961314!GO:0051098;regulation of binding;0.0230727258961314!GO:0017166;vinculin binding;0.0230727258961314!GO:0008022;protein C-terminus binding;0.0231209558139445!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0233059120171471!GO:0006740;NADPH regeneration;0.0233059120171471!GO:0006098;pentose-phosphate shunt;0.0233059120171471!GO:0006518;peptide metabolic process;0.0237322215906293!GO:0050662;coenzyme binding;0.02446660362813!GO:0030503;regulation of cell redox homeostasis;0.0247082766413965!GO:0005595;collagen type XII;0.0249221095554464!GO:0007052;mitotic spindle organization and biogenesis;0.0250087124336999!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0252235140626164!GO:0032940;secretion by cell;0.0252235140626164!GO:0008538;proteasome activator activity;0.0252235140626164!GO:0005862;muscle thin filament tropomyosin;0.0253474106620414!GO:0006118;electron transport;0.0254637917967118!GO:0003702;RNA polymerase II transcription factor activity;0.0255827101254323!GO:0006354;RNA elongation;0.025857596318327!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0268498742747755!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0268944880861319!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0268944880861319!GO:0012506;vesicle membrane;0.0272664393890435!GO:0031970;organelle envelope lumen;0.0278685038454857!GO:0007041;lysosomal transport;0.0280789887589134!GO:0000792;heterochromatin;0.0281765744800934!GO:0000776;kinetochore;0.0282459197464957!GO:0019752;carboxylic acid metabolic process;0.0288666390860118!GO:0000775;chromosome, pericentric region;0.0297067875910041!GO:0030660;Golgi-associated vesicle membrane;0.0299750934821315!GO:0032774;RNA biosynthetic process;0.0301454394457947!GO:0045926;negative regulation of growth;0.0305354090439345!GO:0032984;macromolecular complex disassembly;0.0310242012172131!GO:0007030;Golgi organization and biogenesis;0.0310661118655481!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0318099172088351!GO:0045941;positive regulation of transcription;0.032146693218217!GO:0030029;actin filament-based process;0.0327087885883555!GO:0008610;lipid biosynthetic process;0.0327188313998857!GO:0004527;exonuclease activity;0.0328249917529282!GO:0006082;organic acid metabolic process;0.0334736166618232!GO:0030433;ER-associated protein catabolic process;0.0335574794193558!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0335574794193558!GO:0006351;transcription, DNA-dependent;0.0337606547921292!GO:0006778;porphyrin metabolic process;0.0341516211700816!GO:0033013;tetrapyrrole metabolic process;0.0341516211700816!GO:0048144;fibroblast proliferation;0.0341859223537767!GO:0048145;regulation of fibroblast proliferation;0.0341859223537767!GO:0048146;positive regulation of fibroblast proliferation;0.0341859223537767!GO:0022415;viral reproductive process;0.0343718663513907!GO:0004228;gelatinase A activity;0.0345372655446483!GO:0001955;blood vessel maturation;0.0345372655446483!GO:0006268;DNA unwinding during replication;0.0350893766593819!GO:0004192;cathepsin D activity;0.0355215829973395!GO:0031418;L-ascorbic acid binding;0.0357091304802086!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0357333847088207!GO:0032507;maintenance of cellular protein localization;0.0357582772119698!GO:0006310;DNA recombination;0.0362259376450629!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0362259376450629!GO:0010257;NADH dehydrogenase complex assembly;0.0362259376450629!GO:0033108;mitochondrial respiratory chain complex assembly;0.0362259376450629!GO:0000118;histone deacetylase complex;0.0367418762410115!GO:0008097;5S rRNA binding;0.0374281625865336!GO:0006007;glucose catabolic process;0.0375075221828357!GO:0000339;RNA cap binding;0.038300774654399!GO:0005758;mitochondrial intermembrane space;0.038300774654399!GO:0000209;protein polyubiquitination;0.038300774654399!GO:0005784;translocon complex;0.038817644462609!GO:0008637;apoptotic mitochondrial changes;0.0391473498652281!GO:0030149;sphingolipid catabolic process;0.0391744210077586!GO:0030865;cortical cytoskeleton organization and biogenesis;0.039462482676961!GO:0031371;ubiquitin conjugating enzyme complex;0.039843767174948!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0400114935936319!GO:0008320;protein transmembrane transporter activity;0.0404221450560818!GO:0006275;regulation of DNA replication;0.0411453529861843!GO:0007004;telomere maintenance via telomerase;0.0413225944234144!GO:0022411;cellular component disassembly;0.0413866399936537!GO:0031529;ruffle organization and biogenesis;0.0416954901987049!GO:0030911;TPR domain binding;0.042161900367643!GO:0031123;RNA 3'-end processing;0.0428373914223079!GO:0043241;protein complex disassembly;0.0436284621926885!GO:0002102;podosome;0.0449210993476367!GO:0050790;regulation of catalytic activity;0.0449213150161368!GO:0019210;kinase inhibitor activity;0.0452856627509521!GO:0022884;macromolecule transmembrane transporter activity;0.0457389030933269!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0457389030933269!GO:0042168;heme metabolic process;0.0459562888594249!GO:0009889;regulation of biosynthetic process;0.0460805465515216!GO:0033559;unsaturated fatty acid metabolic process;0.0471545498304861!GO:0006636;unsaturated fatty acid biosynthetic process;0.0471545498304861!GO:0043601;nuclear replisome;0.0473360720954987!GO:0030894;replisome;0.0473360720954987!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0475243370667818!GO:0042585;germinal vesicle;0.0482210800856706!GO:0007088;regulation of mitosis;0.0482210800856706!GO:0045185;maintenance of protein localization;0.0486625438117946!GO:0016408;C-acyltransferase activity;0.0486625438117946!GO:0004563;beta-N-acetylhexosaminidase activity;0.0492685510924691!GO:0008234;cysteine-type peptidase activity;0.0492685510924691!GO:0044438;microbody part;0.04973811930472!GO:0044439;peroxisomal part;0.04973811930472!GO:0032200;telomere organization and biogenesis;0.0498577147218235!GO:0000723;telomere maintenance;0.0498577147218235
|sample_id=10536
|sample_id=10536
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=liver
|sample_tissue=liver
|top_motifs=NKX3-1:2.4014013986;TEF:1.54069538628;ELK1,4_GABP{A,B1}:1.44567927561;PAX4:1.13909978125;LHX3,4:1.12533685023;EN1,2:1.08481260817;FOXA2:1.03941062656;HOXA9_MEIS1:1.03464733533;ONECUT1,2:1.03399668818;ARID5B:1.00443533659;EVI1:0.978658800416;NKX2-1,4:0.949393784112;bHLH_family:0.843416368739;HLF:0.835606116481;HOX{A4,D4}:0.771017703564;AHR_ARNT_ARNT2:0.747460778593;HSF1,2:0.734652891876;ADNP_IRX_SIX_ZHX:0.692261909884;RBPJ:0.670441625949;NKX3-2:0.667181571727;DBP:0.654912855142;TFDP1:0.636161791472;NKX6-1,2:0.632362454882;GTF2A1,2:0.617436015055;PDX1:0.593026787358;FOXL1:0.569308630384;NFIX:0.553426811336;TLX1..3_NFIC{dimer}:0.525410380469;SOX17:0.516837612648;SREBF1,2:0.515187303235;NRF1:0.510738300575;MYOD1:0.488833667446;T:0.456333151556;TBX4,5:0.451574999634;MAFB:0.44334241849;PPARG:0.441272480641;LEF1_TCF7_TCF7L1,2:0.439404967651;ATF6:0.432210564403;ZNF143:0.417563174333;PAX8:0.408571246146;TBP:0.406230593153;E2F1..5:0.396951693748;GATA6:0.383313184086;CEBPA,B_DDIT3:0.374060362738;NFE2L2:0.373746253429;NR6A1:0.365571879888;PRDM1:0.33747598579;GFI1:0.328277460651;IKZF1:0.328157444586;CRX:0.319026819047;SRF:0.298635375992;FOXP1:0.293040183002;BREu{core}:0.290014711121;PRRX1,2:0.281073297545;MTE{core}:0.278627409011;FOXP3:0.269760944646;BPTF:0.260985405653;NFATC1..3:0.244387888725;FOSL2:0.243723202969;NFE2:0.24366307789;STAT2,4,6:0.23694829853;HBP1_HMGB_SSRP1_UBTF:0.230008512777;PAX2:0.227506265687;XBP1:0.227365807315;POU6F1:0.226678004441;UFEwm:0.217986627925;NFIL3:0.214726990968;ATF5_CREB3:0.188524119907;FOXN1:0.184195739232;ATF4:0.173142245759;EGR1..3:0.169564426788;GATA4:0.166602616323;GCM1,2:0.151135838209;BACH2:0.150503624131;AIRE:0.146291491015;JUN:0.138264214869;FOS_FOS{B,L1}_JUN{B,D}:0.135928312942;VSX1,2:0.132378123767;REST:0.117040096598;NKX2-2,8:0.111000956957;NFY{A,B,C}:0.0994297254109;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0993323113479;POU3F1..4:0.0976687130621;NKX2-3_NKX2-5:0.0918089761575;NFKB1_REL_RELA:0.087034705481;MYBL2:0.0713416825633;PITX1..3:0.0696444702808;STAT5{A,B}:0.0678858743056;YY1:0.0506109313413;TEAD1:0.0445597565827;RUNX1..3:0.0418964426475;MYB:0.0368254090698;RFX1:0.0309020234924;HIC1:0.0234244602133;NR3C1:0.0218407053682;SOX5:0.0213660693127;HOX{A5,B5}:0.0203000449423;FOXD3:0.0183603687927;FOXQ1:0.0102444788627;TAL1_TCF{3,4,12}:0.00736752200898;GLI1..3:0.000413309746827;TFAP2B:-0.00109982488468;STAT1,3:-0.0141044596334;ATF2:-0.0197210021177;HNF1A:-0.0368633591951;POU5F1:-0.0512452111609;ZNF384:-0.0514733771388;RXR{A,B,G}:-0.0563027898623;ZNF238:-0.0668037535619;PBX1:-0.076201795058;ZFP161:-0.081188491186;MED-1{core}:-0.109911618286;NHLH1,2:-0.121933852846;PAX5:-0.129012589961;ZBTB6:-0.142053181759;MEF2{A,B,C,D}:-0.142414757277;GTF2I:-0.151673039959;ESRRA:-0.161296822434;IRF1,2:-0.164540617084;CDX1,2,4:-0.165748464774;PATZ1:-0.168150745314;IRF7:-0.182989085032;NFE2L1:-0.190422942617;GZF1:-0.19768765216;NR1H4:-0.208539172287;TP53:-0.217185526246;FOXM1:-0.217489252201;ELF1,2,4:-0.223097754058;FOX{D1,D2}:-0.22697054288;PAX6:-0.239702327016;RFX2..5_RFXANK_RFXAP:-0.255819270573;OCT4_SOX2{dimer}:-0.257486871027;ZBTB16:-0.260666538831;ZNF423:-0.286051080037;FOX{F1,F2,J1}:-0.288857326537;MAZ:-0.294854371619;HMGA1,2:-0.297688402438;SPZ1:-0.299419889524;GFI1B:-0.320648075921;CDC5L:-0.324552719983;RORA:-0.325070992394;SP1:-0.343706791848;XCPE1{core}:-0.354747840459;TFCP2:-0.361467599356;SOX2:-0.364242045358;ALX4:-0.377661135118;MYFfamily:-0.384914120593;SPI1:-0.392431025294;CUX2:-0.392524397703;POU1F1:-0.401499278293;SOX{8,9,10}:-0.406142519949;SPIB:-0.422235799947;TFAP4:-0.426548234092;HAND1,2:-0.433507073356;HIF1A:-0.434105609708;CREB1:-0.452275555153;IKZF2:-0.480787778852;HNF4A_NR2F1,2:-0.488276250861;ZNF148:-0.495086026982;NANOG{mouse}:-0.495947476934;MTF1:-0.510985770627;DMAP1_NCOR{1,2}_SMARC:-0.513767787625;FOX{I1,J2}:-0.517267325518;PAX3,7:-0.543394449643;HES1:-0.554668387205;MZF1:-0.569595957281;ZEB1:-0.614749567994;ETS1,2:-0.617850355007;LMO2:-0.618166255187;HMX1:-0.635052774973;TLX2:-0.638956271232;AR:-0.643348303169;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.650682347797;SMAD1..7,9:-0.681783542512;ZIC1..3:-0.686824374351;RREB1:-0.701168851768;ALX1:-0.716498316369;ESR1:-0.72161036216;TGIF1:-0.7399111131;POU2F1..3:-0.792163669443;EP300:-0.813271578488;FOXO1,3,4:-0.814142824118;SNAI1..3:-0.817567573592;PAX1,9:-0.888247298086;HOX{A6,A7,B6,B7}:-0.891954812764;EBF1:-0.89613393652;NR5A1,2:-1.07128984748;KLF4:-1.13677688433;TFAP2{A,C}:-1.20757174095;TOPORS:-1.23145913446;RXRA_VDR{dimer}:-1.34058595797;NANOG:-1.34684633679
|top_motifs=NKX3-1:2.4014013986;TEF:1.54069538628;ELK1,4_GABP{A,B1}:1.44567927561;PAX4:1.13909978125;LHX3,4:1.12533685023;EN1,2:1.08481260817;FOXA2:1.03941062656;HOXA9_MEIS1:1.03464733533;ONECUT1,2:1.03399668818;ARID5B:1.00443533659;EVI1:0.978658800416;NKX2-1,4:0.949393784112;bHLH_family:0.843416368739;HLF:0.835606116481;HOX{A4,D4}:0.771017703564;AHR_ARNT_ARNT2:0.747460778593;HSF1,2:0.734652891876;ADNP_IRX_SIX_ZHX:0.692261909884;RBPJ:0.670441625949;NKX3-2:0.667181571727;DBP:0.654912855142;TFDP1:0.636161791472;NKX6-1,2:0.632362454882;GTF2A1,2:0.617436015055;PDX1:0.593026787358;FOXL1:0.569308630384;NFIX:0.553426811336;TLX1..3_NFIC{dimer}:0.525410380469;SOX17:0.516837612648;SREBF1,2:0.515187303235;NRF1:0.510738300575;MYOD1:0.488833667446;T:0.456333151556;TBX4,5:0.451574999634;MAFB:0.44334241849;PPARG:0.441272480641;LEF1_TCF7_TCF7L1,2:0.439404967651;ATF6:0.432210564403;ZNF143:0.417563174333;PAX8:0.408571246146;TBP:0.406230593153;E2F1..5:0.396951693748;GATA6:0.383313184086;CEBPA,B_DDIT3:0.374060362738;NFE2L2:0.373746253429;NR6A1:0.365571879888;PRDM1:0.33747598579;GFI1:0.328277460651;IKZF1:0.328157444586;CRX:0.319026819047;SRF:0.298635375992;FOXP1:0.293040183002;BREu{core}:0.290014711121;PRRX1,2:0.281073297545;MTE{core}:0.278627409011;FOXP3:0.269760944646;BPTF:0.260985405653;NFATC1..3:0.244387888725;FOSL2:0.243723202969;NFE2:0.24366307789;STAT2,4,6:0.23694829853;HBP1_HMGB_SSRP1_UBTF:0.230008512777;PAX2:0.227506265687;XBP1:0.227365807315;POU6F1:0.226678004441;UFEwm:0.217986627925;NFIL3:0.214726990968;ATF5_CREB3:0.188524119907;FOXN1:0.184195739232;ATF4:0.173142245759;EGR1..3:0.169564426788;GATA4:0.166602616323;GCM1,2:0.151135838209;BACH2:0.150503624131;AIRE:0.146291491015;JUN:0.138264214869;FOS_FOS{B,L1}_JUN{B,D}:0.135928312942;VSX1,2:0.132378123767;REST:0.117040096598;NKX2-2,8:0.111000956957;NFY{A,B,C}:0.0994297254109;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0993323113479;POU3F1..4:0.0976687130621;NKX2-3_NKX2-5:0.0918089761575;NFKB1_REL_RELA:0.087034705481;MYBL2:0.0713416825633;PITX1..3:0.0696444702808;STAT5{A,B}:0.0678858743056;YY1:0.0506109313413;TEAD1:0.0445597565827;RUNX1..3:0.0418964426475;MYB:0.0368254090698;RFX1:0.0309020234924;HIC1:0.0234244602133;NR3C1:0.0218407053682;SOX5:0.0213660693127;HOX{A5,B5}:0.0203000449423;FOXD3:0.0183603687927;FOXQ1:0.0102444788627;TAL1_TCF{3,4,12}:0.00736752200898;GLI1..3:0.000413309746827;TFAP2B:-0.00109982488468;STAT1,3:-0.0141044596334;ATF2:-0.0197210021177;HNF1A:-0.0368633591951;POU5F1:-0.0512452111609;ZNF384:-0.0514733771388;RXR{A,B,G}:-0.0563027898623;ZNF238:-0.0668037535619;PBX1:-0.076201795058;ZFP161:-0.081188491186;MED-1{core}:-0.109911618286;NHLH1,2:-0.121933852846;PAX5:-0.129012589961;ZBTB6:-0.142053181759;MEF2{A,B,C,D}:-0.142414757277;GTF2I:-0.151673039959;ESRRA:-0.161296822434;IRF1,2:-0.164540617084;CDX1,2,4:-0.165748464774;PATZ1:-0.168150745314;IRF7:-0.182989085032;NFE2L1:-0.190422942617;GZF1:-0.19768765216;NR1H4:-0.208539172287;TP53:-0.217185526246;FOXM1:-0.217489252201;ELF1,2,4:-0.223097754058;FOX{D1,D2}:-0.22697054288;PAX6:-0.239702327016;RFX2..5_RFXANK_RFXAP:-0.255819270573;OCT4_SOX2{dimer}:-0.257486871027;ZBTB16:-0.260666538831;ZNF423:-0.286051080037;FOX{F1,F2,J1}:-0.288857326537;MAZ:-0.294854371619;HMGA1,2:-0.297688402438;SPZ1:-0.299419889524;GFI1B:-0.320648075921;CDC5L:-0.324552719983;RORA:-0.325070992394;SP1:-0.343706791848;XCPE1{core}:-0.354747840459;TFCP2:-0.361467599356;SOX2:-0.364242045358;ALX4:-0.377661135118;MYFfamily:-0.384914120593;SPI1:-0.392431025294;CUX2:-0.392524397703;POU1F1:-0.401499278293;SOX{8,9,10}:-0.406142519949;SPIB:-0.422235799947;TFAP4:-0.426548234092;HAND1,2:-0.433507073356;HIF1A:-0.434105609708;CREB1:-0.452275555153;IKZF2:-0.480787778852;HNF4A_NR2F1,2:-0.488276250861;ZNF148:-0.495086026982;NANOG{mouse}:-0.495947476934;MTF1:-0.510985770627;DMAP1_NCOR{1,2}_SMARC:-0.513767787625;FOX{I1,J2}:-0.517267325518;PAX3,7:-0.543394449643;HES1:-0.554668387205;MZF1:-0.569595957281;ZEB1:-0.614749567994;ETS1,2:-0.617850355007;LMO2:-0.618166255187;HMX1:-0.635052774973;TLX2:-0.638956271232;AR:-0.643348303169;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.650682347797;SMAD1..7,9:-0.681783542512;ZIC1..3:-0.686824374351;RREB1:-0.701168851768;ALX1:-0.716498316369;ESR1:-0.72161036216;TGIF1:-0.7399111131;POU2F1..3:-0.792163669443;EP300:-0.813271578488;FOXO1,3,4:-0.814142824118;SNAI1..3:-0.817567573592;PAX1,9:-0.888247298086;HOX{A6,A7,B6,B7}:-0.891954812764;EBF1:-0.89613393652;NR5A1,2:-1.07128984748;KLF4:-1.13677688433;TFAP2{A,C}:-1.20757174095;TOPORS:-1.23145913446;RXRA_VDR{dimer}:-1.34058595797;NANOG:-1.34684633679
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10536-107G5;search_select_hide=table117:FF:10536-107G5
}}
}}

Latest revision as of 14:28, 3 June 2020

Name:cholangiocellular carcinoma cell line:HuH-28
Species:Human (Homo sapiens)
Library ID:CNhs11283
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueliver
dev stageNA
sexunknown
ageNA
cell typeduct cell, bile duct
cell lineHuH-28
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005972
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11283 CAGE DRX007847 DRR008719
Accession ID Hg19

Library idBAMCTSS
CNhs11283 DRZ000144 DRZ001529
Accession ID Hg38

Library idBAMCTSS
CNhs11283 DRZ011494 DRZ012879
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0355
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.012
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.196
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0265
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0415
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0853
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0713
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.033
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.267
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0311
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.108
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.33
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0319
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.598
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0469
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.179
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.307
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0351
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.374
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11283

Jaspar motifP-value
MA0002.20.332
MA0003.10.0754
MA0004.10.897
MA0006.10.814
MA0007.10.64
MA0009.10.204
MA0014.10.783
MA0017.10.0417
MA0018.20.321
MA0019.10.638
MA0024.10.186
MA0025.10.169
MA0027.10.502
MA0028.11.32001e-8
MA0029.10.101
MA0030.10.333
MA0031.10.906
MA0035.20.462
MA0038.10.0563
MA0039.20.276
MA0040.10.753
MA0041.10.132
MA0042.10.223
MA0043.10.0138
MA0046.10.135
MA0047.20.313
MA0048.10.341
MA0050.10.495
MA0051.10.596
MA0052.10.0471
MA0055.10.228
MA0057.10.103
MA0058.10.925
MA0059.10.492
MA0060.10.0623
MA0061.10.458
MA0062.22.63214e-8
MA0065.20.00723
MA0066.10.136
MA0067.10.129
MA0068.10.559
MA0069.10.993
MA0070.10.412
MA0071.10.905
MA0072.10.248
MA0073.10.48
MA0074.10.453
MA0076.17.75883e-14
MA0077.10.888
MA0078.10.924
MA0079.20.392
MA0080.21.14647e-8
MA0081.10.148
MA0083.10.331
MA0084.10.307
MA0087.10.53
MA0088.10.755
MA0090.10.0196
MA0091.10.354
MA0092.10.407
MA0093.10.85
MA0099.21.58075e-5
MA0100.10.543
MA0101.10.301
MA0102.20.0255
MA0103.10.0012
MA0104.20.773
MA0105.10.215
MA0106.10.625
MA0107.10.356
MA0108.20.0838
MA0111.10.844
MA0112.20.0185
MA0113.10.338
MA0114.10.382
MA0115.10.126
MA0116.10.0101
MA0117.10.859
MA0119.10.861
MA0122.10.541
MA0124.10.498
MA0125.10.731
MA0131.10.484
MA0135.10.0225
MA0136.10.00366
MA0137.20.917
MA0138.20.0252
MA0139.10.748
MA0140.10.326
MA0141.10.847
MA0142.10.15
MA0143.10.481
MA0144.10.731
MA0145.10.344
MA0146.10.0439
MA0147.10.432
MA0148.10.949
MA0149.10.352
MA0150.10.402
MA0152.10.0199
MA0153.10.494
MA0154.10.0278
MA0155.10.054
MA0156.10.0624
MA0157.10.712
MA0159.10.347
MA0160.10.993
MA0162.10.471
MA0163.10.0335
MA0164.10.0181
MA0258.10.116
MA0259.10.787



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11283

Novel motifP-value
10.647
100.551
1000.7
1010.558
1020.127
1030.36
1040.228
1050.0313
1060.0526
1070.0766
1080.877
1090.922
110.432
1100.479
1110.81
1120.0637
1130.033
1140.855
1150.836
1160.591
1170.577
1180.953
1190.723
120.806
1200.262
1210.241
1220.583
1230.0272
1240.777
1250.361
1260.472
1270.125
1280.163
1290.178
130.974
1300.226
1310.236
1320.431
1330.111
1340.248
1350.762
1360.618
1370.23
1380.748
1390.634
140.463
1400.307
1410.537
1420.36
1430.235
1440.73
1450.0894
1460.981
1470.798
1480.682
1490.9
150.162
1500.903
1510.413
1520.213
1530.417
1540.654
1550.0431
1560.75
1570.749
1580.29
1590.0954
160.941
1600.171
1610.602
1620.213
1630.0509
1640.851
1650.417
1660.704
1670.00815
1680.0494
1690.109
170.297
180.405
190.471
20.088
200.341
210.464
220.094
230.0585
240.322
250.337
260.75
270.0683
280.362
290.775
30.917
300.234
310.941
320.402
330.619
340.0498
350.959
360.567
370.883
380.218
390.703
40.595
400.943
410.415
420.873
430.388
440.0543
450.454
460.471
470.574
480.228
490.327
50.0625
500.994
510.286
520.0243
530.19
540.948
550.713
560.0788
570.938
580.0703
590.0298
60.673
600.0769
610.589
620.108
630.797
640.4
650.203
660.014
670.209
680.514
690.344
70.52
700.0353
710.976
720.251
730.5
740.00186
750.138
760.121
770.565
780.00647
790.475
80.802
800.451
810.29
820.343
830.618
840.498
850.523
860.893
870.283
880.479
890.412
90.0315
900.464
910.00358
920.157
930.804
940.978
950.156
960.248
970.665
980.0161
990.238



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11283


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001282 (intralobular bile duct)
0002394 (bile duct)
0000058 (duct)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0009842 (acinus)
0000353 (parenchyma)
0003704 (intrahepatic bile duct)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0003928 (digestive system duct)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0001280 (liver parenchyma)
0001171 (portal lobule)
0004647 (liver lobule)
0002294 (biliary system)
0001173 (biliary tree)
0001172 (hepatic acinus)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0102842 (cholangioma cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

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