FF:11590-120G6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005923 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005923 | ||
|accession_numbers=CAGE;DRX008105;DRR008977;DRZ000402;DRZ001787;DRZ011752;DRZ013137 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX036999;DRR041365;DRZ007007 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0010317,UBERON:0004819,UBERON:0005173,UBERON:0001285,UBERON:0000074,UBERON:0001225,UBERON:0001229,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000666,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:0002584,CL:1000612,CL:0002188 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000153 | |||
|comment=Previously: Alveolar Epithelial Cells, donor2 | |comment=Previously: Alveolar Epithelial Cells, donor2 | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Alveolar%2520Epithelial%2520Cells%252c%2520donor2.CNhs12084.11590-120G6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11590-120G6 | |id=FF:11590-120G6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000153 | ||
|is_obsolete= | |||
|library_id=CNhs12084 | |||
|library_id_phase_based=2:CNhs12084 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11590 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10002.CTTGTA.11590 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11590 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10002.CTTGTA.11590 | |||
|name=Alveolar Epithelial Cells, donor2 | |name=Alveolar Epithelial Cells, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12084,LSID838,release011,COMPLETED | |profile_hcage=CNhs12084,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10002,,, | |profile_srnaseq=SRhi10002,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.0695687979248527,0.229886828011239,0.303943932665321,0.52289359097597,0,0,0,0,0,0,0,0,0,0,0,0.229886828011239,0,0.226091717543234,0,0,0,0,0,0.616942192675634,0,0,0.44582064109255,0,0,0,0,0,0,0,0,0,0,0,0,0.297509639762951,0.229886828011239,0,0,0,0,0,0,0,0.090728392892785,0,0,0,0.229886828011239,0,0.0322691991557221,0.229886828011239,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265813237231568,0,0,0,-0.108355757912391,0.173661372716286,0,0,0,0,-0.0980353512377064,0.21897284367095,0,0,0,0,0,0,0.229886828011239,0,0,0,0,0,0,0,0,0,0,0.148844692638306,0,0,0,0.204726722382558,0.294130062231121,0,0,0.0425564396166463,0,0,0 | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC3205 | |rna_catalog_number=SC3205 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=120G6 | |rna_tube_id=120G6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10002.CTTGTA | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.94636287617465e-229!GO:0005737;cytoplasm;3.8461781257891e-168!GO:0043226;organelle;2.40810059372769e-147!GO:0043229;intracellular organelle;3.4920864231849e-147!GO:0043231;intracellular membrane-bound organelle;1.08011419198904e-136!GO:0043227;membrane-bound organelle;1.37851145027105e-136!GO:0044444;cytoplasmic part;4.08143635957165e-119!GO:0044422;organelle part;1.01300668074491e-116!GO:0044446;intracellular organelle part;1.86960340471982e-115!GO:0005515;protein binding;1.10564932275513e-67!GO:0032991;macromolecular complex;3.02732200953544e-64!GO:0005739;mitochondrion;4.55899785414159e-64!GO:0044237;cellular metabolic process;2.89452212593015e-63!GO:0030529;ribonucleoprotein complex;3.02234850183785e-63!GO:0044238;primary metabolic process;3.35895186134185e-62!GO:0043170;macromolecule metabolic process;9.62185304310226e-54!GO:0031090;organelle membrane;7.26139527050437e-50!GO:0005840;ribosome;1.63319710894183e-47!GO:0043233;organelle lumen;2.53883364162017e-46!GO:0031974;membrane-enclosed lumen;2.53883364162017e-46!GO:0044429;mitochondrial part;5.14437858426033e-44!GO:0003735;structural constituent of ribosome;8.5828624341602e-44!GO:0003723;RNA binding;1.89293965331667e-42!GO:0009058;biosynthetic process;1.26956178024232e-41!GO:0005634;nucleus;6.39068251579927e-41!GO:0006412;translation;1.51449054265964e-40!GO:0019538;protein metabolic process;1.68477090883367e-40!GO:0044428;nuclear part;3.64570827978985e-40!GO:0033279;ribosomal subunit;2.30655678130154e-38!GO:0031967;organelle envelope;3.13150077263826e-37!GO:0044249;cellular biosynthetic process;3.42068664064275e-37!GO:0031975;envelope;7.12017839722143e-37!GO:0044267;cellular protein metabolic process;5.12145310832767e-36!GO:0044260;cellular macromolecule metabolic process;9.8422430156866e-36!GO:0009059;macromolecule biosynthetic process;7.0438631327603e-35!GO:0016043;cellular component organization and biogenesis;9.60829552919151e-35!GO:0043228;non-membrane-bound organelle;8.17472900144719e-32!GO:0043232;intracellular non-membrane-bound organelle;8.17472900144719e-32!GO:0005740;mitochondrial envelope;1.48118630923938e-31!GO:0043234;protein complex;5.32290507011822e-31!GO:0031966;mitochondrial membrane;1.31137423032019e-29!GO:0015031;protein transport;3.3119237457669e-29!GO:0006996;organelle organization and biogenesis;4.30409359385898e-29!GO:0006396;RNA processing;9.96058684161368e-29!GO:0005829;cytosol;1.53065384111281e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.82652341505355e-28!GO:0033036;macromolecule localization;2.7017002230669e-28!GO:0019866;organelle inner membrane;2.7017002230669e-28!GO:0043283;biopolymer metabolic process;8.65064661164646e-28!GO:0008104;protein localization;7.39856319428154e-27!GO:0005743;mitochondrial inner membrane;1.11215279197623e-26!GO:0045184;establishment of protein localization;1.13829869724368e-26!GO:0031981;nuclear lumen;5.61702206882845e-25!GO:0065003;macromolecular complex assembly;1.22420036027866e-22!GO:0046907;intracellular transport;1.31660581063766e-22!GO:0044445;cytosolic part;5.30900118621603e-22!GO:0010467;gene expression;3.08510028430219e-21!GO:0015934;large ribosomal subunit;1.41067661933102e-20!GO:0016071;mRNA metabolic process;2.56258619508929e-20!GO:0022607;cellular component assembly;4.356981454569e-20!GO:0006259;DNA metabolic process;6.06496225799283e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.72697342021419e-19!GO:0044455;mitochondrial membrane part;4.69603018399674e-19!GO:0015935;small ribosomal subunit;7.35557766117275e-19!GO:0012505;endomembrane system;1.57829742907873e-18!GO:0008380;RNA splicing;2.04831966554068e-18!GO:0006886;intracellular protein transport;5.10656574602894e-18!GO:0007049;cell cycle;6.27936900846136e-18!GO:0006119;oxidative phosphorylation;1.27067391015227e-17!GO:0006397;mRNA processing;2.18215780195721e-17!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.53917950787183e-17!GO:0031980;mitochondrial lumen;1.19980604106898e-15!GO:0005759;mitochondrial matrix;1.19980604106898e-15!GO:0005783;endoplasmic reticulum;1.72999369192988e-15!GO:0005746;mitochondrial respiratory chain;6.67920237141946e-15!GO:0044432;endoplasmic reticulum part;1.36938639282148e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.45974522678184e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.40340034689556e-14!GO:0022402;cell cycle process;3.86307406116999e-14!GO:0005794;Golgi apparatus;4.53169665309343e-14!GO:0043412;biopolymer modification;4.75433676174634e-14!GO:0005654;nucleoplasm;1.10533461802424e-13!GO:0008134;transcription factor binding;1.22384750023236e-13!GO:0051649;establishment of cellular localization;1.60131272881436e-13!GO:0000166;nucleotide binding;1.60635304389929e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.77022694436753e-13!GO:0003954;NADH dehydrogenase activity;1.77022694436753e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.77022694436753e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.86130032587184e-13!GO:0006457;protein folding;3.85555980464043e-13!GO:0051641;cellular localization;4.37489505961833e-13!GO:0005681;spliceosome;6.7499411011955e-13!GO:0006464;protein modification process;7.0217685350632e-13!GO:0016874;ligase activity;7.83191537839275e-13!GO:0048770;pigment granule;8.3693849545304e-13!GO:0042470;melanosome;8.3693849545304e-13!GO:0016462;pyrophosphatase activity;3.07979595018601e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.49457767560228e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;3.71131186240853e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.06164417413986e-12!GO:0051186;cofactor metabolic process;5.50393155063054e-12!GO:0005761;mitochondrial ribosome;5.77264699029947e-12!GO:0000313;organellar ribosome;5.77264699029947e-12!GO:0030964;NADH dehydrogenase complex (quinone);7.78466429743708e-12!GO:0045271;respiratory chain complex I;7.78466429743708e-12!GO:0005747;mitochondrial respiratory chain complex I;7.78466429743708e-12!GO:0044451;nucleoplasm part;9.61042274211438e-12!GO:0005730;nucleolus;1.06468927477852e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.09979844545405e-11!GO:0042773;ATP synthesis coupled electron transport;1.09979844545405e-11!GO:0017111;nucleoside-triphosphatase activity;1.46000063109387e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.54435072014785e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.54461060058151e-11!GO:0044265;cellular macromolecule catabolic process;2.68830148776822e-11!GO:0005789;endoplasmic reticulum membrane;2.86131274757932e-11!GO:0012501;programmed cell death;5.10006917109593e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;7.05261944575646e-11!GO:0000278;mitotic cell cycle;7.8132078127086e-11!GO:0006915;apoptosis;9.01493602860909e-11!GO:0006512;ubiquitin cycle;1.20309152342286e-10!GO:0051276;chromosome organization and biogenesis;1.4185868813078e-10!GO:0009057;macromolecule catabolic process;2.28848843294469e-10!GO:0043285;biopolymer catabolic process;2.31585780625971e-10!GO:0032553;ribonucleotide binding;2.71491366590495e-10!GO:0032555;purine ribonucleotide binding;2.71491366590495e-10!GO:0006605;protein targeting;2.93744725361209e-10!GO:0009055;electron carrier activity;3.69934881428756e-10!GO:0006323;DNA packaging;3.877589950905e-10!GO:0017076;purine nucleotide binding;4.84313962659788e-10!GO:0043687;post-translational protein modification;6.04761832710712e-10!GO:0044248;cellular catabolic process;7.49167596376583e-10!GO:0000502;proteasome complex (sensu Eukaryota);9.06426319257507e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.05475692958963e-09!GO:0016740;transferase activity;1.13894717771254e-09!GO:0019941;modification-dependent protein catabolic process;1.1880859859751e-09!GO:0043632;modification-dependent macromolecule catabolic process;1.1880859859751e-09!GO:0008219;cell death;1.35332163983329e-09!GO:0016265;death;1.35332163983329e-09!GO:0051726;regulation of cell cycle;1.37978817694826e-09!GO:0044257;cellular protein catabolic process;1.63311436471143e-09!GO:0006732;coenzyme metabolic process;1.74152287037668e-09!GO:0000074;regulation of progression through cell cycle;2.16242665534141e-09!GO:0006511;ubiquitin-dependent protein catabolic process;2.2653758147923e-09!GO:0044427;chromosomal part;2.46558877189008e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;4.34312951526497e-09!GO:0000375;RNA splicing, via transesterification reactions;4.34312951526497e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.34312951526497e-09!GO:0051082;unfolded protein binding;4.49322380057662e-09!GO:0003712;transcription cofactor activity;6.38618913757572e-09!GO:0000785;chromatin;6.43918752684228e-09!GO:0005694;chromosome;7.32876095166596e-09!GO:0016192;vesicle-mediated transport;7.57298356030099e-09!GO:0022618;protein-RNA complex assembly;7.57298356030099e-09!GO:0007005;mitochondrion organization and biogenesis;1.11789686343539e-08!GO:0030163;protein catabolic process;1.12239680522493e-08!GO:0006333;chromatin assembly or disassembly;1.2727968599345e-08!GO:0048193;Golgi vesicle transport;1.54620731174428e-08!GO:0048523;negative regulation of cellular process;1.84430552800018e-08!GO:0022403;cell cycle phase;2.55784494252382e-08!GO:0031497;chromatin assembly;2.69389738120578e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.85932192825867e-08!GO:0005524;ATP binding;3.85932192825867e-08!GO:0006334;nucleosome assembly;4.30011701595399e-08!GO:0042254;ribosome biogenesis and assembly;4.82389990640078e-08!GO:0043067;regulation of programmed cell death;5.20453294585968e-08!GO:0006974;response to DNA damage stimulus;6.22083704592998e-08!GO:0032559;adenyl ribonucleotide binding;6.29804709496364e-08!GO:0042981;regulation of apoptosis;6.44762362988199e-08!GO:0005768;endosome;6.9070282534617e-08!GO:0006399;tRNA metabolic process;8.46222649494766e-08!GO:0030554;adenyl nucleotide binding;1.3291596921797e-07!GO:0007067;mitosis;1.67749570862596e-07!GO:0006461;protein complex assembly;1.7092454941331e-07!GO:0005635;nuclear envelope;1.88143674263488e-07!GO:0000087;M phase of mitotic cell cycle;2.1864621160321e-07!GO:0009259;ribonucleotide metabolic process;2.46566878148132e-07!GO:0003676;nucleic acid binding;2.5897735153041e-07!GO:0048519;negative regulation of biological process;2.76232925126325e-07!GO:0006163;purine nucleotide metabolic process;2.76232925126325e-07!GO:0065004;protein-DNA complex assembly;3.02155399658055e-07!GO:0044431;Golgi apparatus part;3.07235809174082e-07!GO:0008135;translation factor activity, nucleic acid binding;3.78796935326247e-07!GO:0009150;purine ribonucleotide metabolic process;4.04506783024484e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.71072979309923e-07!GO:0031965;nuclear membrane;5.28612171931343e-07!GO:0051188;cofactor biosynthetic process;5.48399359070673e-07!GO:0008639;small protein conjugating enzyme activity;7.46708992041612e-07!GO:0006260;DNA replication;1.06508440270755e-06!GO:0006913;nucleocytoplasmic transport;1.09766396366127e-06!GO:0006164;purine nucleotide biosynthetic process;1.0979330826653e-06!GO:0016491;oxidoreductase activity;1.12967748605314e-06!GO:0005793;ER-Golgi intermediate compartment;1.19728690909669e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.39227180928328e-06!GO:0009260;ribonucleotide biosynthetic process;1.48262946341405e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.50704477914447e-06!GO:0004842;ubiquitin-protein ligase activity;1.5083128826956e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.54287805483775e-06!GO:0051169;nuclear transport;1.86496747423229e-06!GO:0009141;nucleoside triphosphate metabolic process;1.8985267855402e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.09736250869383e-06!GO:0044453;nuclear membrane part;2.38320063483274e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.46576731335185e-06!GO:0019787;small conjugating protein ligase activity;2.57060907326819e-06!GO:0006793;phosphorus metabolic process;2.84137035815641e-06!GO:0006796;phosphate metabolic process;2.84137035815641e-06!GO:0016564;transcription repressor activity;2.85730942677518e-06!GO:0006281;DNA repair;2.93704862920453e-06!GO:0017038;protein import;3.72092172906683e-06!GO:0016070;RNA metabolic process;3.72538977899313e-06!GO:0009142;nucleoside triphosphate biosynthetic process;4.02834274639012e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.02834274639012e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.38057505471463e-06!GO:0009144;purine nucleoside triphosphate metabolic process;4.38057505471463e-06!GO:0003714;transcription corepressor activity;5.22347041897878e-06!GO:0016604;nuclear body;5.52176083863351e-06!GO:0065002;intracellular protein transport across a membrane;6.560374226225e-06!GO:0005762;mitochondrial large ribosomal subunit;6.7299905306759e-06!GO:0000315;organellar large ribosomal subunit;6.7299905306759e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.01574261427329e-06!GO:0043069;negative regulation of programmed cell death;7.03909554716724e-06!GO:0000279;M phase;7.08118172814444e-06!GO:0006366;transcription from RNA polymerase II promoter;7.18700188185634e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.40816655567064e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.40816655567064e-06!GO:0009719;response to endogenous stimulus;8.11074580264795e-06!GO:0051301;cell division;8.83735943934828e-06!GO:0015986;ATP synthesis coupled proton transport;9.17914542889047e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.17914542889047e-06!GO:0019829;cation-transporting ATPase activity;9.24476597042932e-06!GO:0015630;microtubule cytoskeleton;1.09311620114601e-05!GO:0042623;ATPase activity, coupled;1.09982409664539e-05!GO:0000139;Golgi membrane;1.12527289023704e-05!GO:0042802;identical protein binding;1.22157887177198e-05!GO:0006364;rRNA processing;1.33518121953597e-05!GO:0043066;negative regulation of apoptosis;1.33518121953597e-05!GO:0008565;protein transporter activity;1.33788066123725e-05!GO:0000786;nucleosome;1.34589407061174e-05!GO:0016881;acid-amino acid ligase activity;1.34727508794204e-05!GO:0009056;catabolic process;1.3912943717035e-05!GO:0045259;proton-transporting ATP synthase complex;1.58764375139141e-05!GO:0016568;chromatin modification;1.75209676046102e-05!GO:0006446;regulation of translational initiation;2.22747955644381e-05!GO:0016072;rRNA metabolic process;2.25865615494678e-05!GO:0030120;vesicle coat;2.46022728874924e-05!GO:0030662;coated vesicle membrane;2.46022728874924e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.66522799468569e-05!GO:0005773;vacuole;2.8625016186933e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.91360556001989e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.91360556001989e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.91360556001989e-05!GO:0016310;phosphorylation;3.01454281212739e-05!GO:0003743;translation initiation factor activity;3.4140954565766e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.47412405313286e-05!GO:0006916;anti-apoptosis;3.50311212350491e-05!GO:0045786;negative regulation of progression through cell cycle;3.59161268667941e-05!GO:0003924;GTPase activity;3.76231780958907e-05!GO:0048475;coated membrane;3.94120257793631e-05!GO:0030117;membrane coat;3.94120257793631e-05!GO:0044440;endosomal part;4.1343472481128e-05!GO:0010008;endosome membrane;4.1343472481128e-05!GO:0016887;ATPase activity;4.18820837377482e-05!GO:0005905;coated pit;4.45229454766324e-05!GO:0046034;ATP metabolic process;4.45229454766324e-05!GO:0008654;phospholipid biosynthetic process;4.45229454766324e-05!GO:0050794;regulation of cellular process;4.47962736677052e-05!GO:0009108;coenzyme biosynthetic process;4.70715202712191e-05!GO:0009117;nucleotide metabolic process;4.82429992927018e-05!GO:0031252;leading edge;5.08914289166983e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.35133776227654e-05!GO:0065009;regulation of a molecular function;5.3884504237975e-05!GO:0019843;rRNA binding;5.73141136363836e-05!GO:0016023;cytoplasmic membrane-bound vesicle;6.39470012179846e-05!GO:0006413;translational initiation;6.40725052352447e-05!GO:0048522;positive regulation of cellular process;6.46136394807479e-05!GO:0009060;aerobic respiration;6.92607933808253e-05!GO:0016779;nucleotidyltransferase activity;6.95075612973878e-05!GO:0006754;ATP biosynthetic process;6.95075612973878e-05!GO:0006753;nucleoside phosphate metabolic process;6.95075612973878e-05!GO:0006752;group transfer coenzyme metabolic process;7.18196339467056e-05!GO:0051246;regulation of protein metabolic process;7.19938478089084e-05!GO:0031988;membrane-bound vesicle;7.60825998510941e-05!GO:0043038;amino acid activation;8.34322790471162e-05!GO:0006418;tRNA aminoacylation for protein translation;8.34322790471162e-05!GO:0043039;tRNA aminoacylation;8.34322790471162e-05!GO:0003899;DNA-directed RNA polymerase activity;8.68645574194744e-05!GO:0006091;generation of precursor metabolites and energy;8.79862506919751e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;9.09756750177811e-05!GO:0008610;lipid biosynthetic process;9.54980439361826e-05!GO:0005839;proteasome core complex (sensu Eukaryota);0.000101968390927874!GO:0016469;proton-transporting two-sector ATPase complex;0.000103575175439445!GO:0005643;nuclear pore;0.000105494846089086!GO:0043623;cellular protein complex assembly;0.000107623187281141!GO:0016853;isomerase activity;0.000114259990402064!GO:0006888;ER to Golgi vesicle-mediated transport;0.000121302217226021!GO:0005770;late endosome;0.000130674830024671!GO:0016563;transcription activator activity;0.00013783178048238!GO:0019899;enzyme binding;0.00014273433613922!GO:0005667;transcription factor complex;0.000153906807657079!GO:0031324;negative regulation of cellular metabolic process;0.0001549716072356!GO:0005788;endoplasmic reticulum lumen;0.000170021451554322!GO:0016126;sterol biosynthetic process;0.000171673023430486!GO:0051329;interphase of mitotic cell cycle;0.000187578509130783!GO:0007010;cytoskeleton organization and biogenesis;0.000217584898854437!GO:0005525;GTP binding;0.000250601854161208!GO:0016787;hydrolase activity;0.00025252900078863!GO:0030176;integral to endoplasmic reticulum membrane;0.000259408487411318!GO:0007264;small GTPase mediated signal transduction;0.000259408487411318!GO:0000323;lytic vacuole;0.000259408487411318!GO:0005764;lysosome;0.000259408487411318!GO:0030036;actin cytoskeleton organization and biogenesis;0.000276082954447279!GO:0000245;spliceosome assembly;0.000278858122669203!GO:0009892;negative regulation of metabolic process;0.000291165428218119!GO:0007243;protein kinase cascade;0.000296076629713739!GO:0031982;vesicle;0.000319114494984423!GO:0051325;interphase;0.000324556004183972!GO:0031410;cytoplasmic vesicle;0.000325769741255475!GO:0016567;protein ubiquitination;0.000435784925585332!GO:0016607;nuclear speck;0.000438234819831083!GO:0007006;mitochondrial membrane organization and biogenesis;0.000485483851764538!GO:0008637;apoptotic mitochondrial changes;0.000506314116330509!GO:0004298;threonine endopeptidase activity;0.000511088236371883!GO:0045454;cell redox homeostasis;0.000524959057896806!GO:0046930;pore complex;0.000531082597628911!GO:0016044;membrane organization and biogenesis;0.00055669915439775!GO:0003697;single-stranded DNA binding;0.000559004817965447!GO:0045333;cellular respiration;0.000566024557200668!GO:0033116;ER-Golgi intermediate compartment membrane;0.000621562354968963!GO:0008033;tRNA processing;0.000625413020235481!GO:0032446;protein modification by small protein conjugation;0.000660476331003299!GO:0005813;centrosome;0.00070964631205388!GO:0005769;early endosome;0.000739723594310683!GO:0000314;organellar small ribosomal subunit;0.000739723594310683!GO:0005763;mitochondrial small ribosomal subunit;0.000739723594310683!GO:0003713;transcription coactivator activity;0.000750132734566167!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000889908667615634!GO:0006839;mitochondrial transport;0.000893987741026548!GO:0030118;clathrin coat;0.000905419657732214!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00093383909884935!GO:0030132;clathrin coat of coated pit;0.000973522104356288!GO:0008361;regulation of cell size;0.000992632591197833!GO:0032561;guanyl ribonucleotide binding;0.00103134832065483!GO:0019001;guanyl nucleotide binding;0.00103134832065483!GO:0016049;cell growth;0.00105862125555247!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00105862125555247!GO:0006626;protein targeting to mitochondrion;0.00107510224524338!GO:0030867;rough endoplasmic reticulum membrane;0.00107510224524338!GO:0048518;positive regulation of biological process;0.00109039245573589!GO:0031968;organelle outer membrane;0.00112386065807957!GO:0008092;cytoskeletal protein binding;0.0011817197983779!GO:0001726;ruffle;0.00119012002542536!GO:0046474;glycerophospholipid biosynthetic process;0.00120931566790704!GO:0006082;organic acid metabolic process;0.00121321232112927!GO:0051170;nuclear import;0.00121321232112927!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00121500803950032!GO:0006606;protein import into nucleus;0.00133968186300874!GO:0005815;microtubule organizing center;0.00134927515549006!GO:0031301;integral to organelle membrane;0.0013849306007264!GO:0019867;outer membrane;0.00143224644012041!GO:0008632;apoptotic program;0.00143917995715517!GO:0030029;actin filament-based process;0.00145670565304346!GO:0006099;tricarboxylic acid cycle;0.00146375640197361!GO:0046356;acetyl-CoA catabolic process;0.00146375640197361!GO:0006084;acetyl-CoA metabolic process;0.0014982154830792!GO:0030119;AP-type membrane coat adaptor complex;0.00151902220635948!GO:0019752;carboxylic acid metabolic process;0.00158404216229005!GO:0043681;protein import into mitochondrion;0.00168714804218192!GO:0006695;cholesterol biosynthetic process;0.00173952766069046!GO:0005741;mitochondrial outer membrane;0.00174632452471406!GO:0044262;cellular carbohydrate metabolic process;0.00191059458405104!GO:0001558;regulation of cell growth;0.00193312659023987!GO:0030131;clathrin adaptor complex;0.00197188600244055!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00209406469735167!GO:0048468;cell development;0.0021639899376473!GO:0050789;regulation of biological process;0.00239744954237587!GO:0016481;negative regulation of transcription;0.00240637784942514!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0026342855979701!GO:0005774;vacuolar membrane;0.00264418265262264!GO:0046467;membrane lipid biosynthetic process;0.00280881594164879!GO:0050790;regulation of catalytic activity;0.00295298210621321!GO:0001666;response to hypoxia;0.00297892875749448!GO:0043065;positive regulation of apoptosis;0.00301868124381164!GO:0016301;kinase activity;0.00304971753430757!GO:0008026;ATP-dependent helicase activity;0.00305584117874614!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00325349200468399!GO:0015399;primary active transmembrane transporter activity;0.00325349200468399!GO:0051187;cofactor catabolic process;0.00325851685196484!GO:0043068;positive regulation of programmed cell death;0.00337182538595145!GO:0016859;cis-trans isomerase activity;0.00369827597190123!GO:0005684;U2-dependent spliceosome;0.00371298328303467!GO:0030133;transport vesicle;0.00371298328303467!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00373639546201734!GO:0051920;peroxiredoxin activity;0.00390224688923769!GO:0008250;oligosaccharyl transferase complex;0.00393322400003118!GO:0030125;clathrin vesicle coat;0.00408788181729216!GO:0030665;clathrin coated vesicle membrane;0.00408788181729216!GO:0005048;signal sequence binding;0.00441950384340803!GO:0040029;regulation of gene expression, epigenetic;0.00445315615357965!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00450794144479279!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00450794144479279!GO:0001836;release of cytochrome c from mitochondria;0.00451980143896754!GO:0005996;monosaccharide metabolic process;0.00462552873328518!GO:0019318;hexose metabolic process;0.00464614102380547!GO:0005798;Golgi-associated vesicle;0.00477724880734619!GO:0004386;helicase activity;0.00496973023054057!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00514159168664512!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00514305306480502!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00515061131930057!GO:0006403;RNA localization;0.00517599466030106!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00525843894644025!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00525843894644025!GO:0009109;coenzyme catabolic process;0.00528953112022582!GO:0051338;regulation of transferase activity;0.00536251690559953!GO:0031902;late endosome membrane;0.00542334052792099!GO:0005791;rough endoplasmic reticulum;0.00542334052792099!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00542334052792099!GO:0043488;regulation of mRNA stability;0.00542334052792099!GO:0043487;regulation of RNA stability;0.00542334052792099!GO:0050657;nucleic acid transport;0.00542334052792099!GO:0051236;establishment of RNA localization;0.00542334052792099!GO:0050658;RNA transport;0.00542334052792099!GO:0051427;hormone receptor binding;0.00577901406538351!GO:0017166;vinculin binding;0.00605209535717628!GO:0006979;response to oxidative stress;0.00605209535717628!GO:0051789;response to protein stimulus;0.00605209535717628!GO:0006986;response to unfolded protein;0.00605209535717628!GO:0040008;regulation of growth;0.00615417445832621!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00637508417324451!GO:0005874;microtubule;0.00652777093418428!GO:0005819;spindle;0.00659700666898321!GO:0006066;alcohol metabolic process;0.0067029769671991!GO:0044437;vacuolar part;0.00672102065744524!GO:0006414;translational elongation;0.00686128199796287!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0070133066424601!GO:0015002;heme-copper terminal oxidase activity;0.0070133066424601!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0070133066424601!GO:0004129;cytochrome-c oxidase activity;0.0070133066424601!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00724678816824589!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00724678816824589!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00724678816824589!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00761954940395149!GO:0043549;regulation of kinase activity;0.00767554826566297!GO:0006509;membrane protein ectodomain proteolysis;0.00794617644853361!GO:0033619;membrane protein proteolysis;0.00794617644853361!GO:0006595;polyamine metabolic process;0.00809869792252139!GO:0009165;nucleotide biosynthetic process;0.00827175962900539!GO:0030658;transport vesicle membrane;0.00838411446745989!GO:0045941;positive regulation of transcription;0.00872853340618934!GO:0006520;amino acid metabolic process;0.00873259056869382!GO:0000151;ubiquitin ligase complex;0.00918381864144899!GO:0046489;phosphoinositide biosynthetic process;0.00947527306737763!GO:0035257;nuclear hormone receptor binding;0.00951455451175606!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00957425251068463!GO:0016125;sterol metabolic process;0.00976293146599895!GO:0003684;damaged DNA binding;0.00997498230354745!GO:0005765;lysosomal membrane;0.0100356986622517!GO:0006778;porphyrin metabolic process;0.0102841156983704!GO:0033013;tetrapyrrole metabolic process;0.0102841156983704!GO:0018196;peptidyl-asparagine modification;0.0105602034855581!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0105602034855581!GO:0008629;induction of apoptosis by intracellular signals;0.0107452978706506!GO:0007265;Ras protein signal transduction;0.0111833545951264!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0119548800649765!GO:0016272;prefoldin complex;0.0119548800649765!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0120768389455323!GO:0051098;regulation of binding;0.012116878386162!GO:0030659;cytoplasmic vesicle membrane;0.012116878386162!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0124947421376257!GO:0043154;negative regulation of caspase activity;0.0125614768829145!GO:0045926;negative regulation of growth;0.0133705786326606!GO:0005885;Arp2/3 protein complex;0.0134912710074593!GO:0006458;'de novo' protein folding;0.0138963451565805!GO:0051084;'de novo' posttranslational protein folding;0.0138963451565805!GO:0004576;oligosaccharyl transferase activity;0.0140811731140818!GO:0050178;phenylpyruvate tautomerase activity;0.0143920302374043!GO:0016741;transferase activity, transferring one-carbon groups;0.0146887642126784!GO:0008168;methyltransferase activity;0.0150893073799891!GO:0045334;clathrin-coated endocytic vesicle;0.0151072525687262!GO:0042168;heme metabolic process;0.0153310773158973!GO:0006917;induction of apoptosis;0.0153692930099875!GO:0006779;porphyrin biosynthetic process;0.015841703000252!GO:0033014;tetrapyrrole biosynthetic process;0.015841703000252!GO:0043021;ribonucleoprotein binding;0.0158451297732867!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0162787170151503!GO:0051101;regulation of DNA binding;0.0166919886715988!GO:0045859;regulation of protein kinase activity;0.0167188115242845!GO:0051252;regulation of RNA metabolic process;0.0171476519784154!GO:0001889;liver development;0.0176672920750871!GO:0046822;regulation of nucleocytoplasmic transport;0.0177107635991953!GO:0043566;structure-specific DNA binding;0.0180272962511643!GO:0031300;intrinsic to organelle membrane;0.0184144557514706!GO:0008652;amino acid biosynthetic process;0.0186227883190435!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0191115637186795!GO:0005637;nuclear inner membrane;0.0195387555857289!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0197814669641331!GO:0012502;induction of programmed cell death;0.0197814669641331!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.019894958834408!GO:0030027;lamellipodium;0.0202581754135439!GO:0030660;Golgi-associated vesicle membrane;0.0204160265600679!GO:0043492;ATPase activity, coupled to movement of substances;0.0207311926228433!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0207440544065715!GO:0045893;positive regulation of transcription, DNA-dependent;0.0214442282813984!GO:0006740;NADPH regeneration;0.022003794560448!GO:0006098;pentose-phosphate shunt;0.022003794560448!GO:0004674;protein serine/threonine kinase activity;0.0220593057271937!GO:0006783;heme biosynthetic process;0.0222664999416203!GO:0048471;perinuclear region of cytoplasm;0.022987498984051!GO:0007088;regulation of mitosis;0.0232425989483076!GO:0016860;intramolecular oxidoreductase activity;0.0234401887372661!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0234822740228941!GO:0043414;biopolymer methylation;0.0240193284831159!GO:0006261;DNA-dependent DNA replication;0.0240193284831159!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0242080404753013!GO:0005856;cytoskeleton;0.0242631232207044!GO:0016791;phosphoric monoester hydrolase activity;0.0243375652626374!GO:0030880;RNA polymerase complex;0.0243375652626374!GO:0015992;proton transport;0.0245882083489322!GO:0030308;negative regulation of cell growth;0.0246546260303272!GO:0043284;biopolymer biosynthetic process;0.02492597970926!GO:0050662;coenzyme binding;0.0249811005391895!GO:0006118;electron transport;0.0251326444717509!GO:0051085;chaperone cofactor-dependent protein folding;0.0253593647360509!GO:0031272;regulation of pseudopodium formation;0.0254079740271629!GO:0031269;pseudopodium formation;0.0254079740271629!GO:0031344;regulation of cell projection organization and biogenesis;0.0254079740271629!GO:0031268;pseudopodium organization and biogenesis;0.0254079740271629!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0254079740271629!GO:0031274;positive regulation of pseudopodium formation;0.0254079740271629!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0254079740271629!GO:0010257;NADH dehydrogenase complex assembly;0.0254079740271629!GO:0033108;mitochondrial respiratory chain complex assembly;0.0254079740271629!GO:0045792;negative regulation of cell size;0.0255993524094578!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0259785445129984!GO:0044433;cytoplasmic vesicle part;0.0262473574008211!GO:0051168;nuclear export;0.0266892641130886!GO:0006818;hydrogen transport;0.0267380613315991!GO:0016783;sulfurtransferase activity;0.0268794062877682!GO:0030128;clathrin coat of endocytic vesicle;0.0272189504584423!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0272189504584423!GO:0030122;AP-2 adaptor complex;0.0272189504584423!GO:0030031;cell projection biogenesis;0.0280475148814634!GO:0006897;endocytosis;0.0282295154085888!GO:0010324;membrane invagination;0.0282295154085888!GO:0048487;beta-tubulin binding;0.0282295154085888!GO:0009967;positive regulation of signal transduction;0.0286156862616671!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0289688269903916!GO:0016197;endosome transport;0.029168052972832!GO:0051348;negative regulation of transferase activity;0.029303188068539!GO:0046870;cadmium ion binding;0.0306503860036249!GO:0009100;glycoprotein metabolic process;0.031029195942836!GO:0033673;negative regulation of kinase activity;0.031029195942836!GO:0006469;negative regulation of protein kinase activity;0.031029195942836!GO:0006950;response to stress;0.0314024271888118!GO:0008538;proteasome activator activity;0.0320848489709106!GO:0051028;mRNA transport;0.0324953732082184!GO:0048144;fibroblast proliferation;0.0328274009992469!GO:0048145;regulation of fibroblast proliferation;0.0328274009992469!GO:0030433;ER-associated protein catabolic process;0.0341694165387352!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0341694165387352!GO:0015980;energy derivation by oxidation of organic compounds;0.0345420279557592!GO:0004680;casein kinase activity;0.0354411325455763!GO:0006613;cotranslational protein targeting to membrane;0.0358044786591286!GO:0003746;translation elongation factor activity;0.0362274923266761!GO:0006633;fatty acid biosynthetic process;0.0362274923266761!GO:0008243;plasminogen activator activity;0.0375754235064823!GO:0051287;NAD binding;0.0377328914514358!GO:0008139;nuclear localization sequence binding;0.0377902228520553!GO:0051087;chaperone binding;0.0379417847062351!GO:0045892;negative regulation of transcription, DNA-dependent;0.0389611752923973!GO:0000049;tRNA binding;0.0411449092166495!GO:0016311;dephosphorylation;0.0413001443512755!GO:0006007;glucose catabolic process;0.0417811723440452!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0422209446326145!GO:0006497;protein amino acid lipidation;0.0424041731164978!GO:0006338;chromatin remodeling;0.0425206066479888!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0427590731808075!GO:0055083;monovalent inorganic anion homeostasis;0.0427590731808075!GO:0055064;chloride ion homeostasis;0.0427590731808075!GO:0030644;cellular chloride ion homeostasis;0.0427590731808075!GO:0009119;ribonucleoside metabolic process;0.0432025547119486!GO:0006749;glutathione metabolic process;0.0432240629174138!GO:0000030;mannosyltransferase activity;0.0439762270131873!GO:0004128;cytochrome-b5 reductase activity;0.0441027354483461!GO:0006402;mRNA catabolic process;0.0442268857137878!GO:0006383;transcription from RNA polymerase III promoter;0.0447396023471642!GO:0006289;nucleotide-excision repair;0.0448188382044264!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0455172312051385!GO:0008283;cell proliferation;0.0455490833396472!GO:0044255;cellular lipid metabolic process;0.0456389650678446!GO:0003724;RNA helicase activity;0.0459136647758884!GO:0046519;sphingoid metabolic process;0.0460029003279168!GO:0046394;carboxylic acid biosynthetic process;0.046101975583363!GO:0016053;organic acid biosynthetic process;0.046101975583363!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0475117237133693!GO:0007040;lysosome organization and biogenesis;0.0475117237133693!GO:0006284;base-excision repair;0.047979986308748!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.047979986308748!GO:0000428;DNA-directed RNA polymerase complex;0.047979986308748!GO:0008213;protein amino acid alkylation;0.0480080703270976!GO:0006479;protein amino acid methylation;0.0480080703270976!GO:0006650;glycerophospholipid metabolic process;0.0481918419850447!GO:0032507;maintenance of cellular protein localization;0.0483290095436969!GO:0005862;muscle thin filament tropomyosin;0.0487190252385627!GO:0006506;GPI anchor biosynthetic process;0.0488932745587106!GO:0005657;replication fork;0.0495525609594476 | |||
|sample_id=11590 | |sample_id=11590 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=XCPE1{core}:3.31109148283;ZNF423:3.22258636159;ZNF148:2.58215693175;MYOD1:2.40637441649;POU2F1..3:2.38361292451;SP1:2.36821395205;SNAI1..3:2.20949378969;TFCP2:2.08798183657;GTF2A1,2:2.08254914832;ZEB1:1.916704322;RXRA_VDR{dimer}:1.9137999835;ESRRA:1.85186127108;PPARG:1.71595657259;ESR1:1.68075419646;bHLH_family:1.55853568013;TFAP2{A,C}:1.5240793245;NR5A1,2:1.48014546226;EBF1:1.444847627;TBP:1.3444515749;EP300:1.26003242836;TP53:1.23037600148;HAND1,2:1.2087459471;TEAD1:1.08523718705;LMO2:1.06548143995;ZIC1..3:1.05339904245;TLX1..3_NFIC{dimer}:1.02407261157;T:0.995111363314;RXR{A,B,G}:0.991275038319;TFAP2B:0.975136772849;LEF1_TCF7_TCF7L1,2:0.946712341698;GLI1..3:0.879855175104;TBX4,5:0.782427173292;FOXL1:0.774457423222;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.765939209103;ZBTB6:0.765357308499;RREB1:0.714440180289;JUN:0.683878139371;TFAP4:0.667404514824;IKZF1:0.666353373768;XBP1:0.651113259321;PAX5:0.609700656932;SOX{8,9,10}:0.566571188188;PBX1:0.551466805875;SRF:0.543938232392;SPZ1:0.531931310178;NKX2-3_NKX2-5:0.525388418807;HIC1:0.503360261292;MTF1:0.464591051891;ONECUT1,2:0.454032349029;ELK1,4_GABP{A,B1}:0.442391466457;NFE2L1:0.440923336697;BACH2:0.427363236012;HOX{A5,B5}:0.417500768995;FOS_FOS{B,L1}_JUN{B,D}:0.408592390493;ZNF143:0.383664597266;NR3C1:0.367965196168;REST:0.364418742715;PAX1,9:0.346625717545;NFY{A,B,C}:0.344522429837;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.338902173721;FOXM1:0.318541976971;HNF4A_NR2F1,2:0.308680190766;AR:0.295685068335;NFE2:0.291071483859;PAX8:0.246161490924;SOX2:0.231486373465;VSX1,2:0.230519749291;FOSL2:0.212338324047;NR6A1:0.210033675618;NFKB1_REL_RELA:0.175651079942;TAL1_TCF{3,4,12}:0.141258722363;MAZ:0.125092869121;HNF1A:0.0995383985906;PATZ1:0.0886429369866;NANOG:0.0704317229549;UFEwm:0.0632699277259;ARID5B:0.0626179406361;GZF1:0.0210019512068;KLF4:0.00607244471222;GFI1:0.00058547817252;CDC5L:-0.00025303847285;E2F1..5:-0.016632644947;STAT5{A,B}:-0.0206618469688;FOX{F1,F2,J1}:-0.0246286631453;TOPORS:-0.0257423880763;TFDP1:-0.10611824688;HMX1:-0.125555484654;GTF2I:-0.131585677431;FOXQ1:-0.154681624446;MED-1{core}:-0.158749931775;LHX3,4:-0.162822714446;HLF:-0.165578983316;HIF1A:-0.16864818627;MEF2{A,B,C,D}:-0.169929991609;GATA6:-0.180074188874;ETS1,2:-0.247438724084;CRX:-0.312315337577;STAT2,4,6:-0.344656717026;GFI1B:-0.357154717687;RFX1:-0.373037888487;POU3F1..4:-0.40880988799;RUNX1..3:-0.425236208141;NKX3-2:-0.48784045041;SOX17:-0.495392720374;ZNF238:-0.501287019096;GCM1,2:-0.504781799854;CEBPA,B_DDIT3:-0.519729180667;ATF2:-0.554607828172;MTE{core}:-0.574909564473;NFE2L2:-0.580022544947;PAX2:-0.587115865142;MAFB:-0.601032219796;SPIB:-0.609228751423;HOX{A4,D4}:-0.610660805657;PITX1..3:-0.631040945748;SMAD1..7,9:-0.669983321912;ATF6:-0.671885211835;NRF1:-0.67547062436;POU6F1:-0.675872277002;MZF1:-0.694061740231;ELF1,2,4:-0.695067377265;EGR1..3:-0.721549088304;NHLH1,2:-0.765021672065;ZFP161:-0.76946252911;CREB1:-0.776722609674;HES1:-0.793209471807;NR1H4:-0.810964148684;SPI1:-0.811164343012;HOXA9_MEIS1:-0.814881308238;YY1:-0.820897516608;MYB:-0.824518251689;NFIL3:-0.887122369217;ATF4:-0.90713538415;POU5F1:-0.940154567137;NKX2-2,8:-0.978946159256;RORA:-1.00570454524;PRRX1,2:-1.04013491542;OCT4_SOX2{dimer}:-1.04087608721;SOX5:-1.09446051837;FOXA2:-1.13753708749;PAX3,7:-1.1562339148;EN1,2:-1.15873428752;FOX{D1,D2}:-1.16184302125;FOX{I1,J2}:-1.1622699363;RFX2..5_RFXANK_RFXAP:-1.1702889843;HOX{A6,A7,B6,B7}:-1.20724710794;ATF5_CREB3:-1.21192217231;BREu{core}:-1.21349334131;FOXP3:-1.21892789147;TLX2:-1.22011502;CUX2:-1.22173846875;NANOG{mouse}:-1.26259972726;ADNP_IRX_SIX_ZHX:-1.26697695321;MYFfamily:-1.28052597453;ALX1:-1.28718912325;IRF7:-1.32267840795;POU1F1:-1.33484852588;IRF1,2:-1.34715243763;PAX6:-1.37271979708;ALX4:-1.40039868138;RBPJ:-1.43859671623;STAT1,3:-1.44368846579;TEF:-1.45951930332;DMAP1_NCOR{1,2}_SMARC:-1.46074418289;FOXP1:-1.49491901156;MYBL2:-1.56535622482;DBP:-1.62622768228;PRDM1:-1.62782388387;NFIX:-1.65441089461;TGIF1:-1.65954122898;NFATC1..3:-1.70549933549;ZNF384:-1.71027266307;FOXO1,3,4:-1.75294545046;PDX1:-1.79617127583;HBP1_HMGB_SSRP1_UBTF:-1.79688827176;FOXN1:-1.82746418448;AIRE:-1.83417094236;SREBF1,2:-1.84876455447;NKX3-1:-1.87175305588;EVI1:-1.9032145768;HSF1,2:-1.95064593208;AHR_ARNT_ARNT2:-1.97782811583;FOXD3:-2.246148566;NKX6-1,2:-2.35819501214;IKZF2:-2.37997674254;CDX1,2,4:-2.43019074416;ZBTB16:-2.50568375538;BPTF:-2.67436478872;PAX4:-2.68241926544;HMGA1,2:-2.70769965338;NKX2-1,4:-2.7762962283;GATA4:-2.85569157138 | |top_motifs=XCPE1{core}:3.31109148283;ZNF423:3.22258636159;ZNF148:2.58215693175;MYOD1:2.40637441649;POU2F1..3:2.38361292451;SP1:2.36821395205;SNAI1..3:2.20949378969;TFCP2:2.08798183657;GTF2A1,2:2.08254914832;ZEB1:1.916704322;RXRA_VDR{dimer}:1.9137999835;ESRRA:1.85186127108;PPARG:1.71595657259;ESR1:1.68075419646;bHLH_family:1.55853568013;TFAP2{A,C}:1.5240793245;NR5A1,2:1.48014546226;EBF1:1.444847627;TBP:1.3444515749;EP300:1.26003242836;TP53:1.23037600148;HAND1,2:1.2087459471;TEAD1:1.08523718705;LMO2:1.06548143995;ZIC1..3:1.05339904245;TLX1..3_NFIC{dimer}:1.02407261157;T:0.995111363314;RXR{A,B,G}:0.991275038319;TFAP2B:0.975136772849;LEF1_TCF7_TCF7L1,2:0.946712341698;GLI1..3:0.879855175104;TBX4,5:0.782427173292;FOXL1:0.774457423222;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.765939209103;ZBTB6:0.765357308499;RREB1:0.714440180289;JUN:0.683878139371;TFAP4:0.667404514824;IKZF1:0.666353373768;XBP1:0.651113259321;PAX5:0.609700656932;SOX{8,9,10}:0.566571188188;PBX1:0.551466805875;SRF:0.543938232392;SPZ1:0.531931310178;NKX2-3_NKX2-5:0.525388418807;HIC1:0.503360261292;MTF1:0.464591051891;ONECUT1,2:0.454032349029;ELK1,4_GABP{A,B1}:0.442391466457;NFE2L1:0.440923336697;BACH2:0.427363236012;HOX{A5,B5}:0.417500768995;FOS_FOS{B,L1}_JUN{B,D}:0.408592390493;ZNF143:0.383664597266;NR3C1:0.367965196168;REST:0.364418742715;PAX1,9:0.346625717545;NFY{A,B,C}:0.344522429837;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.338902173721;FOXM1:0.318541976971;HNF4A_NR2F1,2:0.308680190766;AR:0.295685068335;NFE2:0.291071483859;PAX8:0.246161490924;SOX2:0.231486373465;VSX1,2:0.230519749291;FOSL2:0.212338324047;NR6A1:0.210033675618;NFKB1_REL_RELA:0.175651079942;TAL1_TCF{3,4,12}:0.141258722363;MAZ:0.125092869121;HNF1A:0.0995383985906;PATZ1:0.0886429369866;NANOG:0.0704317229549;UFEwm:0.0632699277259;ARID5B:0.0626179406361;GZF1:0.0210019512068;KLF4:0.00607244471222;GFI1:0.00058547817252;CDC5L:-0.00025303847285;E2F1..5:-0.016632644947;STAT5{A,B}:-0.0206618469688;FOX{F1,F2,J1}:-0.0246286631453;TOPORS:-0.0257423880763;TFDP1:-0.10611824688;HMX1:-0.125555484654;GTF2I:-0.131585677431;FOXQ1:-0.154681624446;MED-1{core}:-0.158749931775;LHX3,4:-0.162822714446;HLF:-0.165578983316;HIF1A:-0.16864818627;MEF2{A,B,C,D}:-0.169929991609;GATA6:-0.180074188874;ETS1,2:-0.247438724084;CRX:-0.312315337577;STAT2,4,6:-0.344656717026;GFI1B:-0.357154717687;RFX1:-0.373037888487;POU3F1..4:-0.40880988799;RUNX1..3:-0.425236208141;NKX3-2:-0.48784045041;SOX17:-0.495392720374;ZNF238:-0.501287019096;GCM1,2:-0.504781799854;CEBPA,B_DDIT3:-0.519729180667;ATF2:-0.554607828172;MTE{core}:-0.574909564473;NFE2L2:-0.580022544947;PAX2:-0.587115865142;MAFB:-0.601032219796;SPIB:-0.609228751423;HOX{A4,D4}:-0.610660805657;PITX1..3:-0.631040945748;SMAD1..7,9:-0.669983321912;ATF6:-0.671885211835;NRF1:-0.67547062436;POU6F1:-0.675872277002;MZF1:-0.694061740231;ELF1,2,4:-0.695067377265;EGR1..3:-0.721549088304;NHLH1,2:-0.765021672065;ZFP161:-0.76946252911;CREB1:-0.776722609674;HES1:-0.793209471807;NR1H4:-0.810964148684;SPI1:-0.811164343012;HOXA9_MEIS1:-0.814881308238;YY1:-0.820897516608;MYB:-0.824518251689;NFIL3:-0.887122369217;ATF4:-0.90713538415;POU5F1:-0.940154567137;NKX2-2,8:-0.978946159256;RORA:-1.00570454524;PRRX1,2:-1.04013491542;OCT4_SOX2{dimer}:-1.04087608721;SOX5:-1.09446051837;FOXA2:-1.13753708749;PAX3,7:-1.1562339148;EN1,2:-1.15873428752;FOX{D1,D2}:-1.16184302125;FOX{I1,J2}:-1.1622699363;RFX2..5_RFXANK_RFXAP:-1.1702889843;HOX{A6,A7,B6,B7}:-1.20724710794;ATF5_CREB3:-1.21192217231;BREu{core}:-1.21349334131;FOXP3:-1.21892789147;TLX2:-1.22011502;CUX2:-1.22173846875;NANOG{mouse}:-1.26259972726;ADNP_IRX_SIX_ZHX:-1.26697695321;MYFfamily:-1.28052597453;ALX1:-1.28718912325;IRF7:-1.32267840795;POU1F1:-1.33484852588;IRF1,2:-1.34715243763;PAX6:-1.37271979708;ALX4:-1.40039868138;RBPJ:-1.43859671623;STAT1,3:-1.44368846579;TEF:-1.45951930332;DMAP1_NCOR{1,2}_SMARC:-1.46074418289;FOXP1:-1.49491901156;MYBL2:-1.56535622482;DBP:-1.62622768228;PRDM1:-1.62782388387;NFIX:-1.65441089461;TGIF1:-1.65954122898;NFATC1..3:-1.70549933549;ZNF384:-1.71027266307;FOXO1,3,4:-1.75294545046;PDX1:-1.79617127583;HBP1_HMGB_SSRP1_UBTF:-1.79688827176;FOXN1:-1.82746418448;AIRE:-1.83417094236;SREBF1,2:-1.84876455447;NKX3-1:-1.87175305588;EVI1:-1.9032145768;HSF1,2:-1.95064593208;AHR_ARNT_ARNT2:-1.97782811583;FOXD3:-2.246148566;NKX6-1,2:-2.35819501214;IKZF2:-2.37997674254;CDX1,2,4:-2.43019074416;ZBTB16:-2.50568375538;BPTF:-2.67436478872;PAX4:-2.68241926544;HMGA1,2:-2.70769965338;NKX2-1,4:-2.7762962283;GATA4:-2.85569157138 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11590-120G6;search_select_hide=table117:FF:11590-120G6 | |||
}} | }} | ||
Latest revision as of 18:10, 4 June 2020
| Name: | Alveolar Epithelial Cells, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12084 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12084
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12084
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.617 |
| 10 | 10 | 0.281 |
| 100 | 100 | 0.277 |
| 101 | 101 | 0.0313 |
| 102 | 102 | 0.295 |
| 103 | 103 | 0.59 |
| 104 | 104 | 0.833 |
| 105 | 105 | 0.131 |
| 106 | 106 | 0.184 |
| 107 | 107 | 0.0896 |
| 108 | 108 | 0.533 |
| 109 | 109 | 0.00374 |
| 11 | 11 | 0.367 |
| 110 | 110 | 0.289 |
| 111 | 111 | 0.376 |
| 112 | 112 | 0.788 |
| 113 | 113 | 0.542 |
| 114 | 114 | 0.379 |
| 115 | 115 | 0.0334 |
| 116 | 116 | 0.517 |
| 117 | 117 | 0.582 |
| 118 | 118 | 0.649 |
| 119 | 119 | 0.613 |
| 12 | 12 | 0.363 |
| 120 | 120 | 0.617 |
| 121 | 121 | 0.478 |
| 122 | 122 | 0.0992 |
| 123 | 123 | 0.00472 |
| 124 | 124 | 0.0326 |
| 125 | 125 | 0.162 |
| 126 | 126 | 0.666 |
| 127 | 127 | 0.55 |
| 128 | 128 | 0.806 |
| 129 | 129 | 0.231 |
| 13 | 13 | 0.143 |
| 130 | 130 | 0.434 |
| 131 | 131 | 0.665 |
| 132 | 132 | 0.124 |
| 133 | 133 | 0.264 |
| 134 | 134 | 0.986 |
| 135 | 135 | 0.154 |
| 136 | 136 | 0.0217 |
| 137 | 137 | 0.0377 |
| 138 | 138 | 0.0778 |
| 139 | 139 | 0.223 |
| 14 | 14 | 0.749 |
| 140 | 140 | 0.629 |
| 141 | 141 | 0.269 |
| 142 | 142 | 0.233 |
| 143 | 143 | 0.928 |
| 144 | 144 | 0.292 |
| 145 | 145 | 0.878 |
| 146 | 146 | 0.0939 |
| 147 | 147 | 0.762 |
| 148 | 148 | 0.00384 |
| 149 | 149 | 0.142 |
| 15 | 15 | 0.317 |
| 150 | 150 | 0.292 |
| 151 | 151 | 0.64 |
| 152 | 152 | 0.0348 |
| 153 | 153 | 0.0452 |
| 154 | 154 | 0.339 |
| 155 | 155 | 0.237 |
| 156 | 156 | 0.555 |
| 157 | 157 | 0.47 |
| 158 | 158 | 0.628 |
| 159 | 159 | 0.441 |
| 16 | 16 | 0.519 |
| 160 | 160 | 0.229 |
| 161 | 161 | 0.856 |
| 162 | 162 | 0.668 |
| 163 | 163 | 0.518 |
| 164 | 164 | 0.894 |
| 165 | 165 | 0.0949 |
| 166 | 166 | 0.149 |
| 167 | 167 | 0.0593 |
| 168 | 168 | 0.621 |
| 169 | 169 | 0.107 |
| 17 | 17 | 0.29 |
| 18 | 18 | 0.94 |
| 19 | 19 | 0.516 |
| 2 | 2 | 0.161 |
| 20 | 20 | 0.902 |
| 21 | 21 | 0.554 |
| 22 | 22 | 0.169 |
| 23 | 23 | 0.925 |
| 24 | 24 | 0.823 |
| 25 | 25 | 0.366 |
| 26 | 26 | 0.101 |
| 27 | 27 | 0.373 |
| 28 | 28 | 0.335 |
| 29 | 29 | 0.553 |
| 3 | 3 | 0.52 |
| 30 | 30 | 0.0547 |
| 31 | 31 | 0.484 |
| 32 | 32 | 0.323 |
| 33 | 33 | 0.282 |
| 34 | 34 | 0.238 |
| 35 | 35 | 0.0728 |
| 36 | 36 | 0.849 |
| 37 | 37 | 0.385 |
| 38 | 38 | 0.259 |
| 39 | 39 | 0.757 |
| 4 | 4 | 0.543 |
| 40 | 40 | 0.00643 |
| 41 | 41 | 0.354 |
| 42 | 42 | 0.586 |
| 43 | 43 | 0.904 |
| 44 | 44 | 0.727 |
| 45 | 45 | 0.221 |
| 46 | 46 | 0.762 |
| 47 | 47 | 0.663 |
| 48 | 48 | 0.459 |
| 49 | 49 | 0.417 |
| 5 | 5 | 0.0809 |
| 50 | 50 | 0.292 |
| 51 | 51 | 0.675 |
| 52 | 52 | 0.477 |
| 53 | 53 | 0.297 |
| 54 | 54 | 0.922 |
| 55 | 55 | 0.138 |
| 56 | 56 | 0.466 |
| 57 | 57 | 0.431 |
| 58 | 58 | 0.274 |
| 59 | 59 | 0.0403 |
| 6 | 6 | 0.442 |
| 60 | 60 | 0.574 |
| 61 | 61 | 0.377 |
| 62 | 62 | 0.136 |
| 63 | 63 | 0.497 |
| 64 | 64 | 0.405 |
| 65 | 65 | 0.152 |
| 66 | 66 | 0.477 |
| 67 | 67 | 0.96 |
| 68 | 68 | 0.127 |
| 69 | 69 | 0.0397 |
| 7 | 7 | 0.79 |
| 70 | 70 | 0.84 |
| 71 | 71 | 0.929 |
| 72 | 72 | 0.63 |
| 73 | 73 | 0.0121 |
| 74 | 74 | 0.091 |
| 75 | 75 | 0.545 |
| 76 | 76 | 0.276 |
| 77 | 77 | 0.00237 |
| 78 | 78 | 0.639 |
| 79 | 79 | 0.519 |
| 8 | 8 | 0.48 |
| 80 | 80 | 0.455 |
| 81 | 81 | 0.0402 |
| 82 | 82 | 0.437 |
| 83 | 83 | 0.618 |
| 84 | 84 | 0.786 |
| 85 | 85 | 0.93 |
| 86 | 86 | 0.906 |
| 87 | 87 | 0.0254 |
| 88 | 88 | 0.651 |
| 89 | 89 | 0.29 |
| 9 | 9 | 0.577 |
| 90 | 90 | 3.32272e-4 |
| 91 | 91 | 0.851 |
| 92 | 92 | 0.318 |
| 93 | 93 | 0.442 |
| 94 | 94 | 0.32 |
| 95 | 95 | 0.0106 |
| 96 | 96 | 0.581 |
| 97 | 97 | 0.914 |
| 98 | 98 | 0.703 |
| 99 | 99 | 0.0952 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12084
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000153 human renal glomerular endothelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000666 (fenestrated cell)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
0002584 (renal cortical epithelial cell)
1000612 (kidney corpuscule cell)
0002188 (glomerular endothelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0010317 (germ layer / neural crest derived structure)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0001285 (nephron)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0001229 (renal corpuscle)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000153 (human renal glomerular endothelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
