Personal tools

MCL coexpression mm9:69

From FANTOM5_SSTAR

Revision as of 17:44, 26 November 2012 by Autoedit (talk | contribs)
Jump to: navigation, search


Phase1 CAGE Peaks

 Short description
Mm9::chr10:107349309..107349318,-p4@Otogl
Mm9::chr10:107349378..107349390,-p1@Otogl
Mm9::chr10:107349392..107349413,-p2@Otogl
Mm9::chr10:107349418..107349423,-p5@Otogl
Mm9::chr10:107349430..107349440,-p3@Otogl
Mm9::chr10:107349495..107349500,-p6@Otogl
Mm9::chr10:108316802..108316807,-p@chr10:108316802..108316807
-
Mm9::chr10:108316828..108316839,-p@chr10:108316828..108316839
-
Mm9::chr10:24310748..24310749,+p@chr10:24310748..24310749
+
Mm9::chr10:67372807..67372809,+p@chr10:67372807..67372809
+
Mm9::chr10:97109619..97109632,+p5@Epyc
Mm9::chr10:97109718..97109747,+p1@Epyc
Mm9::chr10:97109753..97109764,+p3@Epyc
Mm9::chr10:97112452..97112459,+p@chr10:97112452..97112459
+
Mm9::chr11:119868636..119868638,+p@chr11:119868636..119868638
+
Mm9::chr11:119878490..119878500,-p8@Aatk
Mm9::chr11:119878561..119878600,-p12@Aatk
Mm9::chr11:119881441..119881454,-p11@Aatk
Mm9::chr11:119881457..119881464,-p14@Aatk
Mm9::chr11:119881474..119881504,-p5@Aatk
Mm9::chr11:119881548..119881551,-p19@Aatk
Mm9::chr11:8405038..8405048,-p@chr11:8405038..8405048
-
Mm9::chr12:36652266..36652295,+p1@Agr3
Mm9::chr12:74142695..74142697,-p@chr12:74142695..74142697
-
Mm9::chr12:77084875..77084885,+p@chr12:77084875..77084885
+
Mm9::chr13:105653963..105653974,-p1@Fam159b
Mm9::chr13:105653993..105654001,-p2@Fam159b
Mm9::chr13:48087761..48087775,-p@chr13:48087761..48087775
-
Mm9::chr13:76964459..76964469,+p15@Mctp1
Mm9::chr13:78322370..78322376,-p4@uc007rhb.1
Mm9::chr13:78322383..78322395,-p2@uc007rhb.1
Mm9::chr13:78322406..78322437,-p1@uc007rhb.1
Mm9::chr14:102291443..102291451,-p@chr14:102291443..102291451
-
Mm9::chr14:102291476..102291496,-p@chr14:102291476..102291496
-
Mm9::chr14:102291551..102291553,-p@chr14:102291551..102291553
-
Mm9::chr14:102291861..102291883,-p@chr14:102291861..102291883
-
Mm9::chr14:102295617..102295622,+p@chr14:102295617..102295622
+
Mm9::chr14:102297657..102297663,+p@chr14:102297657..102297663
+
Mm9::chr14:102297728..102297742,+p@chr14:102297728..102297742
+
Mm9::chr14:102297747..102297765,+p@chr14:102297747..102297765
+
Mm9::chr14:102297775..102297784,+p@chr14:102297775..102297784
+
Mm9::chr14:102298599..102298602,+p@chr14:102298599..102298602
+
Mm9::chr14:119912363..119912365,+p@chr14:119912363..119912365
+
Mm9::chr14:47195524..47195530,-p1@ENSMUST00000151828
Mm9::chr14:48406009..48406013,+p@chr14:48406009..48406013
+
Mm9::chr14:52947782..52947787,+p@chr14:52947782..52947787
+
Mm9::chr14:61665067..61665078,-p@chr14:61665067..61665078
-
Mm9::chr14:62578740..62578749,+p@chr14:62578740..62578749
+
Mm9::chr14:63476017..63476030,+p@chr14:63476017..63476030
+
Mm9::chr14:87148875..87148895,-p@chr14:87148875..87148895
-
Mm9::chr14:9150110..9150118,-p6@Fam107a
Mm9::chr14:9150127..9150141,-p4@Fam107a
Mm9::chr15:55289275..55289297,+p@chr15:55289275..55289297
+
Mm9::chr15:58022966..58022995,-p@chr15:58022966..58022995
-
Mm9::chr15:78299088..78299111,-p4@Tmprss6
Mm9::chr15:81527686..81527728,-p1@Chadl
Mm9::chr15:81527741..81527754,-p4@Chadl
Mm9::chr15:94418486..94418491,-p@chr15:94418486..94418491
-
Mm9::chr15:94418515..94418518,-p@chr15:94418515..94418518
-
Mm9::chr15:94459337..94459353,+p3@Tmem117
Mm9::chr15:94925831..94925836,+p@chr15:94925831..94925836
+
Mm9::chr15:97835130..97835139,-p3@Col2a1
Mm9::chr16:43299427..43299437,+p@chr16:43299427..43299437
+
Mm9::chr17:23820986..23820999,-p1@Cldn9
Mm9::chr17:31335953..31335957,-p3@Tmprss3
Mm9::chr17:34752721..34752738,-p1@Egfl8
Mm9::chr17:34752740..34752754,-p2@Egfl8
Mm9::chr17:34752910..34752923,-p3@Egfl8
Mm9::chr17:34752945..34752955,-p4@Egfl8
Mm9::chr17:34752992..34753001,-p5@Egfl8
Mm9::chr18:21809890..21809907,+p1@ENSMUST00000144487
Mm9::chr18:21809932..21809944,+p2@ENSMUST00000144487
Mm9::chr18:21809951..21809967,+p3@ENSMUST00000144487
Mm9::chr18:43219181..43219192,-p12@Ppp2r2b
Mm9::chr19:22522386..22522398,+p8@Trpm3
Mm9::chr19:22766837..22766862,+p14@Trpm3
Mm9::chr19:22767063..22767085,+p10@Trpm3
Mm9::chr19:22767090..22767099,+p18@Trpm3
Mm9::chr19:22767103..22767120,+p15@Trpm3
Mm9::chr19:41869484..41869522,-p@chr19:41869484..41869522
-
Mm9::chr19:45150595..45150601,+p2@Kazald1
Mm9::chr19:46407185..46407198,-p@chr19:46407185..46407198
-
Mm9::chr19:46407266..46407281,-p@chr19:46407266..46407281
-
Mm9::chr19:46407289..46407300,-p@chr19:46407289..46407300
-
Mm9::chr19:46407360..46407393,-p@chr19:46407360..46407393
-
Mm9::chr19:46407404..46407418,-p@chr19:46407404..46407418
-
Mm9::chr19:53495719..53495723,+p@chr19:53495719..53495723
+
Mm9::chr19:55255206..55255223,+p1@Tectb
Mm9::chr19:55255289..55255299,+p2@Tectb
Mm9::chr19:55256373..55256384,+p@chr19:55256373..55256384
+
Mm9::chr19:55269566..55269577,-p@chr19:55269566..55269577
-
Mm9::chr19:55270369..55270394,+p@chr19:55270369..55270394
+
Mm9::chr1:14300065..14300087,-p7@Eya1
Mm9::chr1:154233756..154233796,-p1@Tsen15
Mm9::chr1:154246932..154246939,+p7@Glt25d2
Mm9::chr1:154246954..154247011,+p1@Glt25d2
Mm9::chr1:154247012..154247021,+p5@Glt25d2
Mm9::chr1:154247025..154247038,+p2@Glt25d2
Mm9::chr1:43454162..43454170,-p@chr1:43454162..43454170
-
Mm9::chr1:58335153..58335155,+p1@Aox3l1
Mm9::chr2:136942069..136942086,-p4@Jag1
Mm9::chr2:136942131..136942142,-p6@Jag1
Mm9::chr2:136942178..136942187,-p8@Jag1
Mm9::chr2:163517841..163517844,-p1@ENSMUST00000154065
Mm9::chr2:170213440..170213469,-p4@Bcas1
Mm9::chr2:170213471..170213517,-p3@Bcas1
Mm9::chr2:62250229..62250240,-p8@Dpp4
Mm9::chr2:62250276..62250291,-p7@Dpp4
Mm9::chr2:9811162..9811171,-p2@9230102O04Rik
Mm9::chr2:9811213..9811223,-p1@9230102O04Rik
Mm9::chr2:9827910..9827918,+p2@ENSMUST00000149014
Mm9::chr3:132520414..132520421,-p@chr3:132520414..132520421
-
Mm9::chr3:31585340..31585360,+p@chr3:31585340..31585360
+
Mm9::chr3:35012397..35012405,+p@chr3:35012397..35012405
+
Mm9::chr3:35012425..35012439,+p@chr3:35012425..35012439
+
Mm9::chr3:55694224..55694235,+p@chr3:55694224..55694235
+
Mm9::chr3:69811590..69811601,+p1@Otol1
Mm9::chr3:69811606..69811616,+p2@Otol1
Mm9::chr3:81012915..81012923,+p@chr3:81012915..81012923
+
Mm9::chr4:101908153..101908163,+p@chr4:101908153..101908163
+
Mm9::chr4:120714364..120714376,+p@chr4:120714364..120714376
+
Mm9::chr4:151450310..151450318,+p@chr4:151450310..151450318
+
Mm9::chr4:151450365..151450374,+p@chr4:151450365..151450374
+
Mm9::chr4:153881018..153881027,+p@chr4:153881018..153881027
+
Mm9::chr4:153881042..153881060,+p@chr4:153881042..153881060
+
Mm9::chr4:58340140..58340151,+p@chr4:58340140..58340151
+
Mm9::chr4:82351639..82351658,-p14@Nfib
Mm9::chr5:113939859..113939865,+p@chr5:113939859..113939865
+
Mm9::chr5:113939919..113939925,+p@chr5:113939919..113939925
+
Mm9::chr5:115995281..115995324,+p14@Pxn
Mm9::chr5:92800684..92800687,+p@chr5:92800684..92800687
+
Mm9::chr5:92800703..92800717,+p@chr5:92800703..92800717
+
Mm9::chr5:92800735..92800736,+p@chr5:92800735..92800736
+
Mm9::chr5:92800747..92800758,+p@chr5:92800747..92800758
+
Mm9::chr6:30619311..30619322,-p16@Tsga14
Mm9::chr6:30619378..30619412,-p11@Tsga14
Mm9::chr6:30619443..30619450,-p13@Tsga14
Mm9::chr6:30619458..30619461,-p17@Tsga14
Mm9::chr6:30620092..30620097,+p@chr6:30620092..30620097
+
Mm9::chr6:30620140..30620158,+p@chr6:30620140..30620158
+
Mm9::chr6:77193263..77193279,+p@chr6:77193263..77193279
+
Mm9::chr7:116313558..116313578,-p2@Lmo1
Mm9::chr7:128226917..128226918,+p2@Otoa
Mm9::chr7:128226928..128226948,+p1@Otoa
Mm9::chr7:139346301..139346310,-p3@Cpxm2
Mm9::chr7:139597649..139597660,+p@chr7:139597649..139597660
+
Mm9::chr7:139597684..139597691,+p@chr7:139597684..139597691
+
Mm9::chr7:27964761..27964768,+p@chr7:27964761..27964768
+
Mm9::chr7:27966066..27966156,-p1@Mia1
Mm9::chr7:27966170..27966181,-p2@Mia1
Mm9::chr7:29733825..29733837,-p@chr7:29733825..29733837
-
Mm9::chr7:52784962..52785010,+p1@Plekha4
Mm9::chr7:53496326..53496340,+p1@Otog
Mm9::chr7:59135658..59135665,+p22@Gas2
Mm9::chr7:59135670..59135677,+p19@Gas2
Mm9::chr8:13425469..13425503,+p@chr8:13425469..13425503
+
Mm9::chr8:24557044..24557053,+p@chr8:24557044..24557053
+
Mm9::chr8:89252614..89252625,-p@chr8:89252614..89252625
-
Mm9::chr8:94180607..94180619,-p@chr8:94180607..94180619
-
Mm9::chr9:109965295..109965307,+p12@Mtap4
Mm9::chr9:109965316..109965323,+p19@Mtap4
Mm9::chr9:109965336..109965355,+p18@Mtap4
Mm9::chr9:40215569..40215580,-p@chr9:40215569..40215580
-
Mm9::chr9:40215608..40215613,-p@chr9:40215608..40215613
-
Mm9::chr9:40215646..40215657,-p@chr9:40215646..40215657
-
Mm9::chr9:41408215..41408233,+p@chr9:41408215..41408233
+
Mm9::chr9:41495920..41495928,-p@chr9:41495920..41495928
-
Mm9::chr9:42139059..42139081,-p@chr9:42139059..42139081
-
Mm9::chr9:42147036..42147053,-p@chr9:42147036..42147053
-
Mm9::chr9:42202683..42202684,-p@chr9:42202683..42202684
-
Mm9::chr9:42206730..42206739,-p@chr9:42206730..42206739
-
Mm9::chr9:42206745..42206774,-p@chr9:42206745..42206774
-
Mm9::chr9:42206784..42206793,-p@chr9:42206784..42206793
-
Mm9::chr9:42207375..42207384,-p@chr9:42207375..42207384
-
Mm9::chr9:42207397..42207408,-p@chr9:42207397..42207408
-
Mm9::chr9:42207697..42207705,-p@chr9:42207697..42207705
-
Mm9::chr9:42207777..42207789,-p7@Tecta
Mm9::chr9:42207792..42207805,-p11@Tecta
Mm9::chr9:42207838..42207847,-p14@Tecta
Mm9::chr9:42207852..42207876,-p2@Tecta
Mm9::chr9:42207887..42207960,-p1@Tecta
Mm9::chr9:42207965..42207978,-p5@Tecta
Mm9::chr9:42207983..42207995,-p3@Tecta
Mm9::chr9:42207998..42208009,-p6@Tecta
Mm9::chr9:42208023..42208043,-p4@Tecta
Mm9::chr9:42208142..42208157,-p10@Tecta
Mm9::chr9:42208238..42208253,-p8@Tecta
Mm9::chr9:42209647..42209662,-p@chr9:42209647..42209662
-
Mm9::chr9:42209665..42209676,-p@chr9:42209665..42209676
-
Mm9::chr9:42209681..42209703,-p@chr9:42209681..42209703
-
Mm9::chr9:42209719..42209753,-p@chr9:42209719..42209753
-
Mm9::chr9:42209759..42209780,-p@chr9:42209759..42209780
-
Mm9::chr9:77109241..77109259,-p@chr9:77109241..77109259
-
Mm9::chr9:77109269..77109270,-p@chr9:77109269..77109270
-
Mm9::chr9:77109306..77109314,-p@chr9:77109306..77109314
-
Mm9::chr9:79860658..79860662,-p@chr9:79860658..79860662
-
Mm9::chr9:86693712..86693719,-p@chr9:86693712..86693719
-
Mm9::chrX:82018101..82018109,+p21@Dmd
Mm9::chrX:82018151..82018169,+p16@Dmd


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005578proteinaceous extracellular matrix0.00036584161716227
GO:0044421extracellular region part0.015524209100608
GO:0005615extracellular space0.0205738329730343
GO:0005201extracellular matrix structural constituent0.0205738329730343
GO:0007160cell-matrix adhesion0.0205738329730343
GO:0031589cell-substrate adhesion0.0205742652227464
GO:0007605sensory perception of sound0.0365280401623938
GO:0022610biological adhesion0.0365280401623938
GO:0007155cell adhesion0.0365280401623938
GO:0050954sensory perception of mechanical stimulus0.0365280401623938



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
cranial bone1.87e-862
pneumatized bone1.87e-862
zone of bone organ1.87e-862
primary subdivision of skull1.87e-862
cranial conduit1.87e-862
head bone1.87e-862
irregular bone1.87e-862
developing epithelial placode1.87e-862
neurogenic placode1.87e-862
dorsolateral placode1.87e-862
cranial placode1.87e-862
head or neck bone1.87e-862
head mesenchyme1.87e-862
spiral organ of cochlea1.87e-862
internal ear1.87e-862
calvarium1.87e-862
vestibulo-auditory system1.87e-862
temporal bone1.87e-862
cranium1.87e-862
petrous part of temporal bone1.87e-862
vestibular system1.87e-862
bony labyrinth1.87e-862
ear1.87e-862
cochlea1.87e-862
membranous labyrinth1.87e-862
cochlear labyrinth1.87e-862
cochlear duct of membranous labyrinth1.87e-862
axial skeletal system1.87e-862
neurocranium1.87e-862
cranial skeletal system1.87e-862
skull1.87e-862
otic placode1.87e-862
ear vesicle1.87e-862
otic capsule1.87e-862
cartilaginous neurocranium1.87e-862
future membranous labyrinth1.87e-862
otic cup1.87e-862
otic capsule cartilage condensation1.87e-862
head paraxial mesoderm1.87e-862
otocyst epithelium1.87e-862
otic capsule pre-cartilage condensation1.87e-862
subdivision of skeletal system6.66e-306
developing mesenchymal condensation6.66e-306
pre-cartilage condensation6.66e-306
cartilaginous condensation6.66e-306
duct7.57e-267
simple columnar epithelium5.67e-1711
dense mesenchyme tissue5.67e-1711
paraxial mesoderm5.67e-1711
presumptive paraxial mesoderm5.67e-1711
sense organ1.13e-1512
sensory system1.13e-1512
entire sense organ system1.13e-1512
head1.42e-1413
ectodermal placode1.42e-1413
bone element3.83e-0922
skeletal element3.83e-0922
skeletal system3.83e-0922


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:69&oldid=2561289"