Personal tools

FF:11527-119I6: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008208
|DRA_sample_Accession=CAGE@DRS008208
|accession_numbers=CAGE;DRX008316;DRR009188;DRZ000613;DRZ001998
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0000020,UBERON:0003566,UBERON:0003891,UBERON:0001032,UBERON:0010317,UBERON:0000964,UBERON:0001777,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0010409,UBERON:0004456,UBERON:0001456,UBERON:0010230
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0000020,UBERON:0003566,UBERON:0003891,UBERON:0001032,UBERON:0010317,UBERON:0000964,UBERON:0001777,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0010409,UBERON:0004456,UBERON:0001456,UBERON:0010230
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002363
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002363
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000084
|is_a=EFO:0002091;;FF:0000084
|is_obsolete=
|is_obsolete=
|library_id=CNhs11337
|library_ids=CNhs11337
|library_ids=CNhs11337
|name=Keratocytes, donor1
|name=Keratocytes, donor1
Line 87: Line 89:
|top_motifs=bHLH_family:1.82063488014;GTF2A1,2:1.44789600353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37079695304;LHX3,4:1.2956175113;HOX{A6,A7,B6,B7}:1.2654545821;RXR{A,B,G}:1.24351315152;ZNF238:1.20178506656;EBF1:1.10589218577;CRX:1.00339842039;NR1H4:0.966426681978;TP53:0.960654607899;HES1:0.843849667591;TBX4,5:0.81979253853;TFAP4:0.817377606751;NR3C1:0.812042649082;CEBPA,B_DDIT3:0.807824448642;GZF1:0.807660402501;ESR1:0.79494971077;NFIX:0.771838533655;TLX1..3_NFIC{dimer}:0.758588825838;PBX1:0.69184879407;HOX{A5,B5}:0.652455446153;ZNF148:0.649977315876;TEF:0.623208973653;HLF:0.620722476443;TFAP2{A,C}:0.573085788792;STAT5{A,B}:0.548834159382;POU1F1:0.477255173176;SOX17:0.453422976384;PRRX1,2:0.443046800566;RREB1:0.441305578336;GFI1B:0.438878827278;RXRA_VDR{dimer}:0.433340248026;TFDP1:0.381462180952;TEAD1:0.380873299042;ZIC1..3:0.370994883693;IRF7:0.370555455423;LEF1_TCF7_TCF7L1,2:0.368763529222;SOX5:0.367452479748;POU2F1..3:0.358037723419;ZNF423:0.35588325796;ZBTB6:0.34975134338;PATZ1:0.348505442083;NKX2-2,8:0.344445430127;EN1,2:0.33961375303;GLI1..3:0.32984512687;NR5A1,2:0.327770509834;TFAP2B:0.326660887797;HAND1,2:0.309797833357;FOXA2:0.28508329586;ELK1,4_GABP{A,B1}:0.277434801165;GTF2I:0.259041912365;NR6A1:0.207547776393;PDX1:0.203330774231;MYB:0.198401060049;NFE2:0.192307514542;GFI1:0.188460178121;YY1:0.183916085786;NKX2-3_NKX2-5:0.180618508807;BACH2:0.153145130047;NANOG:0.149411627449;TAL1_TCF{3,4,12}:0.143207322137;KLF4:0.142960970183;XBP1:0.133909997766;HNF4A_NR2F1,2:0.129807950058;FOX{F1,F2,J1}:0.124263348012;RORA:0.0915474898546;NFE2L2:0.0883434727416;HIC1:0.0855539431078;FOX{I1,J2}:0.0782738694301;ALX1:0.0755271251692;ADNP_IRX_SIX_ZHX:0.0646225903368;LMO2:0.0621647026646;PAX8:0.0590668771714;FOS_FOS{B,L1}_JUN{B,D}:0.0586335249621;PAX5:0.0585976882847;TFCP2:0.0570929356366;XCPE1{core}:0.0511376214612;NKX3-1:0.05001380567;MZF1:0.0411188298881;CUX2:0.0394331576706;MYBL2:0.0376985225248;MYOD1:0.0303632032723;FOSL2:0.0268036486007;SRF:0.0215346129056;PAX1,9:0.0167080897802;GATA6:0.00776711762362;NFE2L1:0.00632605887996;ONECUT1,2:-0.00666900374878;SP1:-0.00671708601258;PAX3,7:-0.0190252959438;RFX1:-0.0218699493489;HNF1A:-0.0309358345408;TOPORS:-0.0347188470856;JUN:-0.0365016755836;ZNF143:-0.0449480844283;HIF1A:-0.0503469395553;AHR_ARNT_ARNT2:-0.0602791209705;IRF1,2:-0.061023724554;HOX{A4,D4}:-0.0928396743025;CDX1,2,4:-0.0941942542045;AR:-0.0942104104363;SREBF1,2:-0.111473378725;NFIL3:-0.113459821549;FOXM1:-0.117956638577;ALX4:-0.121493994755;IKZF1:-0.121768857186;TBP:-0.125556857796;MTF1:-0.139053100824;MED-1{core}:-0.163911685068;NFATC1..3:-0.174720957696;STAT2,4,6:-0.175117630506;RUNX1..3:-0.17735854883;TLX2:-0.188458044472;SPZ1:-0.191147704643;ESRRA:-0.199244102818;VSX1,2:-0.20835293325;NFKB1_REL_RELA:-0.208693175592;NFY{A,B,C}:-0.211006244284;MAZ:-0.211394235937;MEF2{A,B,C,D}:-0.225011186894;HOXA9_MEIS1:-0.254017103587;CDC5L:-0.262002317708;UFEwm:-0.264869398211;EVI1:-0.267325303047;SNAI1..3:-0.27671094031;CREB1:-0.279623960096;FOXD3:-0.284149212725;FOXO1,3,4:-0.288684383828;PRDM1:-0.289723682117;ATF6:-0.292822119838;GCM1,2:-0.311551303995;MTE{core}:-0.315971492239;OCT4_SOX2{dimer}:-0.325855840626;TGIF1:-0.337905798593;REST:-0.345510109294;ATF4:-0.35301978053;MYFfamily:-0.36423982283;POU5F1:-0.372426538551;HBP1_HMGB_SSRP1_UBTF:-0.374761084008;NKX6-1,2:-0.378038745355;POU6F1:-0.380329855017;SOX{8,9,10}:-0.386390910395;NHLH1,2:-0.403244758875;POU3F1..4:-0.435075941013;RFX2..5_RFXANK_RFXAP:-0.450889907997;SPIB:-0.451992542039;BREu{core}:-0.46097892896;ATF2:-0.469314312428;NKX2-1,4:-0.495438973813;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.52047565194;FOXQ1:-0.521002409855;AIRE:-0.521161117154;E2F1..5:-0.524292090982;PPARG:-0.529094067798;NANOG{mouse}:-0.530482409369;SPI1:-0.530802446966;NRF1:-0.546779740237;ARID5B:-0.553642556514;ETS1,2:-0.579476944103;EGR1..3:-0.588135019192;ZNF384:-0.59369327071;DBP:-0.59825991719;T:-0.604665944574;PAX4:-0.60558601316;NKX3-2:-0.62749149718;FOX{D1,D2}:-0.634966698258;HMX1:-0.636374943603;ATF5_CREB3:-0.657933212555;BPTF:-0.661350052034;ZEB1:-0.67037001181;FOXL1:-0.686491171142;FOXP3:-0.712376978745;HMGA1,2:-0.727115741758;SOX2:-0.727368784362;PITX1..3:-0.734616633154;ELF1,2,4:-0.762939337651;PAX6:-0.812151196896;DMAP1_NCOR{1,2}_SMARC:-0.815491323065;STAT1,3:-0.86899839862;EP300:-0.880369300438;RBPJ:-0.899753842227;FOXP1:-0.923243083764;ZFP161:-0.933812277475;MAFB:-0.953577118925;PAX2:-0.959086260827;SMAD1..7,9:-1.00698173214;GATA4:-1.03303079221;HSF1,2:-1.03911305831;IKZF2:-1.14811816189;ZBTB16:-1.32562024065;FOXN1:-1.81931146469
|top_motifs=bHLH_family:1.82063488014;GTF2A1,2:1.44789600353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37079695304;LHX3,4:1.2956175113;HOX{A6,A7,B6,B7}:1.2654545821;RXR{A,B,G}:1.24351315152;ZNF238:1.20178506656;EBF1:1.10589218577;CRX:1.00339842039;NR1H4:0.966426681978;TP53:0.960654607899;HES1:0.843849667591;TBX4,5:0.81979253853;TFAP4:0.817377606751;NR3C1:0.812042649082;CEBPA,B_DDIT3:0.807824448642;GZF1:0.807660402501;ESR1:0.79494971077;NFIX:0.771838533655;TLX1..3_NFIC{dimer}:0.758588825838;PBX1:0.69184879407;HOX{A5,B5}:0.652455446153;ZNF148:0.649977315876;TEF:0.623208973653;HLF:0.620722476443;TFAP2{A,C}:0.573085788792;STAT5{A,B}:0.548834159382;POU1F1:0.477255173176;SOX17:0.453422976384;PRRX1,2:0.443046800566;RREB1:0.441305578336;GFI1B:0.438878827278;RXRA_VDR{dimer}:0.433340248026;TFDP1:0.381462180952;TEAD1:0.380873299042;ZIC1..3:0.370994883693;IRF7:0.370555455423;LEF1_TCF7_TCF7L1,2:0.368763529222;SOX5:0.367452479748;POU2F1..3:0.358037723419;ZNF423:0.35588325796;ZBTB6:0.34975134338;PATZ1:0.348505442083;NKX2-2,8:0.344445430127;EN1,2:0.33961375303;GLI1..3:0.32984512687;NR5A1,2:0.327770509834;TFAP2B:0.326660887797;HAND1,2:0.309797833357;FOXA2:0.28508329586;ELK1,4_GABP{A,B1}:0.277434801165;GTF2I:0.259041912365;NR6A1:0.207547776393;PDX1:0.203330774231;MYB:0.198401060049;NFE2:0.192307514542;GFI1:0.188460178121;YY1:0.183916085786;NKX2-3_NKX2-5:0.180618508807;BACH2:0.153145130047;NANOG:0.149411627449;TAL1_TCF{3,4,12}:0.143207322137;KLF4:0.142960970183;XBP1:0.133909997766;HNF4A_NR2F1,2:0.129807950058;FOX{F1,F2,J1}:0.124263348012;RORA:0.0915474898546;NFE2L2:0.0883434727416;HIC1:0.0855539431078;FOX{I1,J2}:0.0782738694301;ALX1:0.0755271251692;ADNP_IRX_SIX_ZHX:0.0646225903368;LMO2:0.0621647026646;PAX8:0.0590668771714;FOS_FOS{B,L1}_JUN{B,D}:0.0586335249621;PAX5:0.0585976882847;TFCP2:0.0570929356366;XCPE1{core}:0.0511376214612;NKX3-1:0.05001380567;MZF1:0.0411188298881;CUX2:0.0394331576706;MYBL2:0.0376985225248;MYOD1:0.0303632032723;FOSL2:0.0268036486007;SRF:0.0215346129056;PAX1,9:0.0167080897802;GATA6:0.00776711762362;NFE2L1:0.00632605887996;ONECUT1,2:-0.00666900374878;SP1:-0.00671708601258;PAX3,7:-0.0190252959438;RFX1:-0.0218699493489;HNF1A:-0.0309358345408;TOPORS:-0.0347188470856;JUN:-0.0365016755836;ZNF143:-0.0449480844283;HIF1A:-0.0503469395553;AHR_ARNT_ARNT2:-0.0602791209705;IRF1,2:-0.061023724554;HOX{A4,D4}:-0.0928396743025;CDX1,2,4:-0.0941942542045;AR:-0.0942104104363;SREBF1,2:-0.111473378725;NFIL3:-0.113459821549;FOXM1:-0.117956638577;ALX4:-0.121493994755;IKZF1:-0.121768857186;TBP:-0.125556857796;MTF1:-0.139053100824;MED-1{core}:-0.163911685068;NFATC1..3:-0.174720957696;STAT2,4,6:-0.175117630506;RUNX1..3:-0.17735854883;TLX2:-0.188458044472;SPZ1:-0.191147704643;ESRRA:-0.199244102818;VSX1,2:-0.20835293325;NFKB1_REL_RELA:-0.208693175592;NFY{A,B,C}:-0.211006244284;MAZ:-0.211394235937;MEF2{A,B,C,D}:-0.225011186894;HOXA9_MEIS1:-0.254017103587;CDC5L:-0.262002317708;UFEwm:-0.264869398211;EVI1:-0.267325303047;SNAI1..3:-0.27671094031;CREB1:-0.279623960096;FOXD3:-0.284149212725;FOXO1,3,4:-0.288684383828;PRDM1:-0.289723682117;ATF6:-0.292822119838;GCM1,2:-0.311551303995;MTE{core}:-0.315971492239;OCT4_SOX2{dimer}:-0.325855840626;TGIF1:-0.337905798593;REST:-0.345510109294;ATF4:-0.35301978053;MYFfamily:-0.36423982283;POU5F1:-0.372426538551;HBP1_HMGB_SSRP1_UBTF:-0.374761084008;NKX6-1,2:-0.378038745355;POU6F1:-0.380329855017;SOX{8,9,10}:-0.386390910395;NHLH1,2:-0.403244758875;POU3F1..4:-0.435075941013;RFX2..5_RFXANK_RFXAP:-0.450889907997;SPIB:-0.451992542039;BREu{core}:-0.46097892896;ATF2:-0.469314312428;NKX2-1,4:-0.495438973813;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.52047565194;FOXQ1:-0.521002409855;AIRE:-0.521161117154;E2F1..5:-0.524292090982;PPARG:-0.529094067798;NANOG{mouse}:-0.530482409369;SPI1:-0.530802446966;NRF1:-0.546779740237;ARID5B:-0.553642556514;ETS1,2:-0.579476944103;EGR1..3:-0.588135019192;ZNF384:-0.59369327071;DBP:-0.59825991719;T:-0.604665944574;PAX4:-0.60558601316;NKX3-2:-0.62749149718;FOX{D1,D2}:-0.634966698258;HMX1:-0.636374943603;ATF5_CREB3:-0.657933212555;BPTF:-0.661350052034;ZEB1:-0.67037001181;FOXL1:-0.686491171142;FOXP3:-0.712376978745;HMGA1,2:-0.727115741758;SOX2:-0.727368784362;PITX1..3:-0.734616633154;ELF1,2,4:-0.762939337651;PAX6:-0.812151196896;DMAP1_NCOR{1,2}_SMARC:-0.815491323065;STAT1,3:-0.86899839862;EP300:-0.880369300438;RBPJ:-0.899753842227;FOXP1:-0.923243083764;ZFP161:-0.933812277475;MAFB:-0.953577118925;PAX2:-0.959086260827;SMAD1..7,9:-1.00698173214;GATA4:-1.03303079221;HSF1,2:-1.03911305831;IKZF2:-1.14811816189;ZBTB16:-1.32562024065;FOXN1:-1.81931146469
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS008208
|accession_numbers=DRX008316;DRR009188;DRZ000613;DRZ001998;CAGE
|library_id=CNhs11337
}}
}}

Revision as of 17:09, 17 October 2013


Name:Keratocytes, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11337
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueeye
dev stageNA
sexNA
ageNA
cell typekeratocyte
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC6525
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS008208
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11337 CAGE DRX008316 DRR009188
Accession ID Hg19

Library idBAMCTSS
CNhs11337 DRZ000613 DRZ001998
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.176
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0774
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0931
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.324
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.362
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.218
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0109
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.168
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.206
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.122
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.122
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.122
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.122
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11337

Jaspar motifP-value
MA0002.20.0813
MA0003.10.232
MA0004.10.00579
MA0006.10.535
MA0007.10.0566
MA0009.10.316
MA0014.10.968
MA0017.10.0799
MA0018.20.195
MA0019.10.614
MA0024.10.00152
MA0025.10.751
MA0027.10.466
MA0028.10.894
MA0029.10.485
MA0030.10.608
MA0031.10.0872
MA0035.20.0221
MA0038.10.276
MA0039.20.976
MA0040.10.675
MA0041.10.32
MA0042.10.863
MA0043.10.877
MA0046.10.159
MA0047.20.951
MA0048.10.175
MA0050.10.348
MA0051.10.24
MA0052.10.85
MA0055.10.012
MA0057.10.531
MA0058.10.00304
MA0059.10.134
MA0060.10.193
MA0061.10.643
MA0062.20.121
MA0065.20.013
MA0066.10.36
MA0067.10.247
MA0068.10.817
MA0069.10.846
MA0070.10.00491
MA0071.10.108
MA0072.10.547
MA0073.10.858
MA0074.10.198
MA0076.10.798
MA0077.10.23
MA0078.10.501
MA0079.20.645
MA0080.26.28967e-6
MA0081.10.197
MA0083.10.624
MA0084.10.5
MA0087.10.982
MA0088.10.204
MA0090.10.0721
MA0091.10.0308
MA0092.10.646
MA0093.10.00847
MA0099.26.0691e-6
MA0100.10.961
MA0101.10.856
MA0102.20.139
MA0103.10.567
MA0104.20.297
MA0105.10.298
MA0106.10.00568
MA0107.10.987
MA0108.20.848
MA0111.10.485
MA0112.20.0442
MA0113.10.00235
MA0114.10.082
MA0115.10.571
MA0116.10.547
MA0117.10.376
MA0119.10.123
MA0122.10.137
MA0124.10.135
MA0125.10.849
MA0131.10.313
MA0135.10.164
MA0136.13.05681e-4
MA0137.20.142
MA0138.20.904
MA0139.10.591
MA0140.10.0147
MA0141.10.0428
MA0142.10.779
MA0143.10.696
MA0144.10.535
MA0145.10.48
MA0146.10.043
MA0147.10.37
MA0148.10.534
MA0149.10.428
MA0150.10.441
MA0152.10.563
MA0153.10.207
MA0154.10.244
MA0155.10.0343
MA0156.10.0369
MA0157.10.284
MA0159.10.157
MA0160.10.122
MA0162.10.0995
MA0163.10.115
MA0164.10.424
MA0258.10.0644
MA0259.10.7



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11337

Novel motifP-value
10.844
100.792
1000.61
1010.657
1020.42
1030.434
1040.0537
1050.0859
1060.0711
1070.0131
1080.841
1090.0106
110.0372
1100.101
1110.994
1120.63
1130.263
1140.73
1150.815
1160.0657
1170.31
1180.516
1190.928
120.731
1200.598
1210.778
1220.311
1230.189
1240.576
1250.479
1260.99
1270.901
1280.555
1290.749
130.302
1300.105
1310.72
1320.444
1330.0112
1340.216
1350.948
1360.807
1370.258
1380.74
1390.947
140.836
1400.337
1410.659
1420.237
1430.482
1440.962
1450.318
1460.0451
1470.576
1480.863
1490.924
150.49
1500.259
1510.661
1520.0583
1530.347
1540.166
1550.32
1560.358
1570.0486
1580.52
1590.579
160.186
1600.0436
1610.607
1620.0439
1630.809
1640.368
1650.236
1660.675
1670.897
1680.92
1690.1
170.161
186.73356e-4
190.118
20.55
200.536
210.335
220.135
230.257
240.249
250.317
260.184
270.612
280.507
290.886
30.393
300.172
310.252
320.175
330.0796
340.0873
350.344
360.894
370.0469
380.663
390.395
40.635
400.0333
410.483
420.565
430.0842
440.147
450.252
460.174
470.16
480.0694
490.0648
50.575
500.235
510.342
520.447
530.667
540.337
550.636
560.128
570.318
580.329
590.0437
60.837
600.137
610.226
620.671
630.159
640.0631
650.0326
660.248
670.889
680.207
690.0364
70.986
700.00569
710.474
720.472
730.0258
740.963
750.375
760.902
770.018
780.595
790.684
80.105
800.815
810.467
820.887
830.198
840.641
850.0732
860.986
870.233
880.0888
890.0828
90.262
900.196
910.935
920.634
930.752
940.121
950.161
960.644
970.258
980.698
990.0112



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11337


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002363 (keratocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0000020 (sense organ)
0003566 (head connective tissue)
0003891 (stroma)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000964 (cornea)
0001777 (substantia propria of cornea)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0010409 (eye surface)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000084 (human keratocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000221 (ectodermal cell)
CL:0000008 (migratory cranial neural crest cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11527-119I6&oldid=3078381"