FFCP PHASE1:Hg19::chr2:693362..693373,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:693362..693373,+
|short_description=p@chr2:693362..693373,+
|description=CAGE_peak_at_chr2:693362..693373,+
|association_with_transcript=NA
|EntrezGene=NA...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:693362..693373,+ | |||
|description=CAGE_peak_at_chr2:693362..693373,+ | |||
|id=chr2:693362..693373,+ | |||
|ontology_enrichment_celltype=CL:1000507!2.36e-27!12;CL:1000494!2.36e-27!12;CL:1000449!9.54e-25!16;CL:1000497!9.19e-22!18;CL:0002518!9.19e-22!18;CL:0002681!1.11e-19!13;CL:0002584!1.11e-19!13;CL:0000239!3.12e-13!3;CL:1000615!3.12e-13!3;CL:0002306!3.12e-13!3;CL:0000650!7.48e-07!3;CL:1000618!7.48e-07!3;CL:1001318!7.48e-07!3;CL:0002173!7.48e-07!3;CL:1000500!7.48e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:1000507;6.92e-55;10!CL:1000494;6.92e-55;10!CL:1000449;1.33e-36;15!CL:1000497;2.71e-32;17!CL:0002518;2.71e-32;17!CL:0000650;3.92e-32;2!CL:1000500;3.92e-32;2!CL:1000618;3.92e-32;2!CL:1001318;3.92e-32;2!CL:0002173;3.92e-32;2!CL:0000239;2.81e-21;3!CL:1000615;2.81e-21;3!CL:0002306;2.81e-21;3!CL:0002681;7.14e-21;12!CL:0002584;7.14e-21;12!CL:0000669;1.31e-16;4!CL:1000746;6.69e-10;7!CL:1000612;6.69e-10;7 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,6.62e-55,10;CL:1000494,6.62e-55,10;CL:1000449,1.29e-36,15;CL:1000497,2.64e-32,17;CL:0002518,2.64e-32,17;CL:0000650,3.35e-32,2;CL:1000500,3.35e-32,2;CL:1000618,3.35e-32,2;CL:1001318,3.35e-32,2;CL:0002173,3.35e-32,2;CL:0000239,2.67e-21,3;CL:1000615,2.67e-21,3;CL:0002306,2.67e-21,3;CL:0002681,6.62e-21,12;CL:0002584,6.62e-21,12;CL:0000669,1.21e-16,4;CL:1000746,6.40e-10,7;CL:1000612,6.40e-10,7 | |||
|ontology_enrichment_development_v019=UBERON:0005795;3.20e-14;10!UBERON:0007297;4.88e-09;2 | |||
|ontology_enrichment_disease=DOID:0060072!6.29e-10!4 | |||
|ontology_enrichment_disease_v019=DOID:0060084;4.45e-21;3!DOID:127;4.45e-21;3!DOID:0060072;4.51e-16;4!DOID:3910;6.93e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,4.94e-21,3;DOID:127,4.94e-21,3;DOID:0060072,4.87e-16,4;DOID:3910,5.49e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0006555!3.47e-28!17;UBERON:0005103!3.47e-28!17;UBERON:0000083!3.47e-28!17;UBERON:0009201!3.47e-28!17;UBERON:0004819!3.47e-28!17;UBERON:0006553!3.47e-28!17;UBERON:0003074!3.47e-28!17;UBERON:0003060!3.47e-28!17;UBERON:0009773!2.36e-27!12;UBERON:0001231!2.36e-27!12;UBERON:0004810!2.36e-27!12;UBERON:0000080!1.75e-26!18;UBERON:0002120!1.75e-26!18;UBERON:0004875!1.75e-26!18;UBERON:0005721!1.75e-26!18;UBERON:0005754!1.75e-26!18;UBERON:0007297!1.75e-26!18;UBERON:0004211!9.54e-25!16;UBERON:0001285!9.54e-25!16;UBERON:0007684!9.54e-25!16;UBERON:0003220!9.54e-25!16;UBERON:0004208!9.54e-25!16;UBERON:0004876!1.37e-23!20;UBERON:0002113!1.52e-23!27;UBERON:0003918!1.52e-23!27;UBERON:0005095!1.52e-23!27;UBERON:0007687!1.52e-23!27;UBERON:0003887!2.38e-22!21;UBERON:0000058!4.50e-21!26;UBERON:0001225!1.11e-19!13;UBERON:0008987!1.11e-19!13;UBERON:0000489!2.19e-19!32;UBERON:0001851!1.00e-15!16;UBERON:0006554!2.03e-15!44;UBERON:0001008!5.29e-15!45;UBERON:0000353!1.02e-14!17;UBERON:0003064!8.09e-14!37;UBERON:0005172!1.54e-13!55;UBERON:0005173!1.54e-13!55;UBERON:0006853!3.12e-13!3;UBERON:0007685!3.12e-13!3;UBERON:0004134!3.12e-13!3;UBERON:0002417!7.30e-12!61;UBERON:0000916!7.30e-12!61;UBERON:0003886!1.12e-09!63;UBERON:0002553!2.11e-08!70;UBERON:0005177!3.09e-08!107;UBERON:0009569!1.38e-07!113;UBERON:0003103!1.97e-07!69;UBERON:0000464!1.97e-07!104;UBERON:0003567!7.48e-07!3;UBERON:0003838!7.48e-07!3;UBERON:0005169!7.48e-07!3;UBERON:0002321!7.48e-07!3;UBERON:0005215!7.48e-07!3;UBERON:0002303!7.48e-07!3;UBERON:0002319!7.48e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;6.92e-55;10!UBERON:0009773;6.92e-55;10!UBERON:0001231;6.92e-55;10!UBERON:0004810;6.92e-55;10!UBERON:0006555;1.33e-36;15!UBERON:0004819;1.33e-36;15!UBERON:0001285;1.33e-36;15!UBERON:0007684;1.33e-36;15!UBERON:0003567;3.92e-32;2!UBERON:0003838;3.92e-32;2!UBERON:0003586;3.92e-32;2!UBERON:0005169;3.92e-32;2!UBERON:0002321;3.92e-32;2!UBERON:0005215;3.92e-32;2!UBERON:0002303;3.92e-32;2!UBERON:0002319;3.92e-32;2!UBERON:0002113;6.16e-31;24!UBERON:0011143;6.16e-31;24!UBERON:0000489;1.49e-25;29!UBERON:0006554;1.08e-24;30!UBERON:0001008;1.08e-24;30!UBERON:0006853;2.81e-21;3!UBERON:0007685;2.81e-21;3!UBERON:0004134;2.81e-21;3!UBERON:0001225;7.14e-21;12!UBERON:0008987;7.14e-21;12!UBERON:0001851;8.93e-17;15!UBERON:0000353;8.93e-17;15!UBERON:0001301;9.57e-17;1!UBERON:0003891;1.31e-16;4!UBERON:0004175;7.05e-12;21!UBERON:0000074;6.69e-10;7!UBERON:0001229;6.69e-10;7!UBERON:0005172;2.87e-09;52!UBERON:0005173;2.87e-09;52!UBERON:0004903;6.93e-09;2!UBERON:0002173;6.93e-09;2!UBERON:0002186;6.93e-09;2!UBERON:0000995;1.30e-08;17!UBERON:0003975;3.65e-08;18!UBERON:0000058;4.88e-07;10!UBERON:0003103;9.42e-07;61 | |||
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|short_description=p@chr2:693362..693373,+ | |||
}} | }} |
Latest revision as of 11:43, 29 July 2015
Short description: | p@chr2:693362..693373, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:693362..693373, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 6.62e-55 | 10 |
nephron tubule epithelial cell | 6.62e-55 | 10 |
epithelial cell of nephron | 1.29e-36 | 15 |
kidney cell | 2.64e-32 | 17 |
kidney epithelial cell | 2.64e-32 | 17 |
mesangial cell | 3.35e-32 | 2 |
kidney interstitial cell | 3.35e-32 | 2 |
juxtaglomerular complex cell | 3.35e-32 | 2 |
renal interstitial pericyte | 3.35e-32 | 2 |
extraglomerular mesangial cell | 3.35e-32 | 2 |
brush border epithelial cell | 2.67e-21 | 3 |
kidney cortex tubule cell | 2.67e-21 | 3 |
epithelial cell of proximal tubule | 2.67e-21 | 3 |
kidney cortical cell | 6.62e-21 | 12 |
renal cortical epithelial cell | 6.62e-21 | 12 |
pericyte cell | 1.21e-16 | 4 |
glomerular cell | 6.40e-10 | 7 |
kidney corpuscule cell | 6.40e-10 | 7 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 4.94e-21 | 3 |
leiomyoma | 4.94e-21 | 3 |
benign neoplasm | 4.87e-16 | 4 |
lung adenocarcinoma | 5.49e-09 | 2 |