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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005844
|accession_numbers=CAGE;DRX007840;DRR008712;DRZ000137;DRZ001522;DRZ011487;DRZ012872
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0004821,UBERON:0004903,UBERON:0000479,UBERON:0000058,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0007499,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0005178,UBERON:0000487,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0003215,UBERON:0005181,UBERON:0010317,UBERON:0009856,UBERON:0010368,UBERON:0009911,UBERON:0002299,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0006524,UBERON:0008874,UBERON:0002169,UBERON:0004894,UBERON:0002173,UBERON:0002186
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0004821,UBERON:0004903,UBERON:0000479,UBERON:0000058,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0003914,UBERON:0007499,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0000060,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0009569,UBERON:0005178,UBERON:0000487,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0003215,UBERON:0005181,UBERON:0010317,UBERON:0009856,UBERON:0010368,UBERON:0009911,UBERON:0002299,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915,UBERON:0006524,UBERON:0008874,UBERON:0002169,UBERON:0004894,UBERON:0002173,UBERON:0002186
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000322
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000322
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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|expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.31!201.37!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.07!115.69!ELF3;;chr4:57547454..57547469,-!p1@HOPX!1.87!72.72!HOPX;;chr1:166958538..166958552,+!p2@MAEL!1.81!63.31!MAEL;;chr14:37131058..37131139,+!p1@PAX9!1.72!51.87!PAX9;;chr3:189349162..189349207,+!p2@TP63!1.65!43.73!TP63;;chr14:36989427..36989442,-!p1@NKX2-1!1.61!39.41!NKX2-1;;chr17:17726907..17726958,-!p2@SREBF1!1.59!223.49!SREBF1;;chr8:102504651..102504683,+!p1@GRHL2!1.51!31.02!GRHL2;;chr3:193853927..193853944,+!p1@HES1!1.45!850.48!HES1;;chr17:80797886..80797906,-!p1@ZNF750!1.43!26.19!ZNF750;;chr14:36989358..36989378,-!p3@NKX2-1!1.39!23.39!NKX2-1;;chr14:36989940..36989957,-!p2@NKX2-1!1.39!23.39!NKX2-1;;chr11:34642612..34642646,+!p1@EHF!1.37!22.37!EHF;;chr17:70117153..70117174,+!p1@SOX9!1.36!216.88!SOX9;;chr1:166958504..166958525,+!p1@MAEL!1.36!21.87!MAEL;;chr7:63505799..63505904,+!p1@ZNF727!1.35!21.61!ZNF727;;chr20:55204351..55204377,+!p1@TFAP2C!1.28!22.88!TFAP2C;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.92!PITX1;;chr1:209979467..209979494,-!p1@IRF6!1.23!18.05!IRF6;;chr15:67418119..67418162,+!p5@SMAD3!1.23!17.80!SMAD3;;chr14:38064429..38064486,-!p1@FOXA1!1.23!16.02!FOXA1;;chr3:111314186..111314204,-!p1@ZBED2!1.23!16.02!ZBED2;;chr19:45971246..45971265,+!p1@FOSB!1.21!275.87!FOSB;;chr5:137804405..137804444,+!p3@EGR1!1.18!16.78!EGR1;;chr6:126240442..126240459,+!p4@NCOA7!1.13!16.02!NCOA7;;chr2:238592039..238592054,+!p4@LRRFIP1!1.12!12.20!LRRFIP1;;chr14:105935396..105935413,+!p4@MTA1!1.11!11.95!MTA1;;chr5:137804484..137804498,+!p2@EGR1!1.07!43.73!EGR1;;chr3:12330560..12330579,+!p1@PPARG!1.07!12.46!PPARG;;chr14:36989913..36989931,-!p6@NKX2-1!1.07!10.68!NKX2-1;;chr20:6748325..6748352,+!p1@BMP2!1.06!15.26!BMP2;;chr12:52445218..52445237,+!p1@NR4A1!1.05!131.19!NR4A1;;chr14:105935426..105935440,+!p9@MTA1!1.05!10.17!MTA1;;chr1:151804244..151804310,-!p1@RORC!1.04!9.92!RORC;;chr8:102504979..102505010,+!p2@GRHL2!1.04!9.92!GRHL2;;chr10:126138597..126138612,-!p1@NKX1-2!1.02!9.41!NKX1-2;;chr6:126240380..126240430,+!p2@NCOA7!1.01!24.41!NCOA7;;chr6:28048343..28048354,+!p1@ZNF165!1.01!9.15!ZNF165;;chr14:36989379..36989390,-!p8@NKX2-1!1.01!9.15!NKX2-1;;chr5:92918860..92918871,+!p10@NR2F1!1.00!9.92!NR2F1;;chr15:67418047..67418093,+!p4@SMAD3!0.98!10.93!SMAD3;;chr14:36989892..36989908,-!p9@NKX2-1!0.98!8.64!NKX2-1;;chr13:73633131..73633149,+!p1@KLF5!0.96!88.48!KLF5;;chr16:54320158..54320200,-!p5@IRX3!0.96!11.70!IRX3;;chrY:21906594..21906622,-!p1@KDM5D!0.96!8.14!KDM5D;;chr6:21597600..21597664,+!p3@SOX4!0.95!13.48!SOX4;;chr14:36989336..36989354,-!p5@NKX2-1!0.95!7.88!NKX2-1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.94!7.63!ZNF676;;chr3:181429704..181429722,+!p1@SOX2!0.94!7.63!SOX2;;chr5:137801160..137801176,+!p1@EGR1!0.93!768.35!EGR1;;chr17:17726892..17726903,-!p6@SREBF1!0.92!8.39!SREBF1;;chr15:67418177..67418204,+!p9@SMAD3!0.92!7.37!SMAD3;;chr11:129245526..129245553,+!p1@BARX2!0.92!7.37!BARX2;;chr5:134369879..134369898,-!p2@PITX1!0.91!7.12!PITX1;;chr8:102504690..102504704,+!p3@GRHL2!0.90!6.86!GRHL2;;chr9:124976154..124976177,-!p5@LHX6!0.90!6.86!LHX6;;chr5:92918894..92918912,+!p2@NR2F1!0.89!23.39!NR2F1;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.88!67.12!ZNF595;;chr6:10412600..10412637,-!p1@TFAP2A!0.88!11.19!TFAP2A;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.61!TFAP2A;;chr2:214015343..214015366,-!p3@IKZF2!0.88!6.61!IKZF2;;chr9:100615499..100615519,+!p1@FOXE1!0.87!6.36!FOXE1;;chr1:24645832..24645853,+!p1@GRHL3!0.87!6.36!GRHL3;;chr5:137804357..137804390,+!p4@EGR1!0.86!7.37!EGR1;;chr1:935467..935484,-!p1@HES4!0.85!28.73!HES4;;chr16:54320675..54320715,-!p1@IRX3!0.85!13.73!IRX3;;chr1:24645921..24645973,+!p2@GRHL3!0.85!6.10!GRHL3;;chr6:21597765..21597779,+!p2@SOX4!0.84!51.36!SOX4;;chr12:24715376..24715432,-!p1@SOX5!0.83!7.37!SOX5;;chr11:65667846..65667868,-!p1@FOSL1!0.82!157.89!FOSL1;;chr19:21324863..21324874,+!p2@ZNF431!0.82!10.17!ZNF431;;chr10:135122868..135122893,+!p3@ZNF511!0.82!5.59!ZNF511;;chr5:178368186..178368238,+!p1@ZNF454!0.81!10.17!ZNF454;;chr12:54785074..54785122,-!p2@ZNF385A!0.81!8.64!ZNF385A;;chr6:126240463..126240489,+!p6@NCOA7!0.80!6.10!NCOA7;;chr20:22565370..22565388,-!p2@FOXA2!0.80!5.34!FOXA2;;chr14:36989412..36989423,-!p12@NKX2-1!0.80!5.34!NKX2-1;;chr17:80797863..80797874,-!p2@ZNF750!0.80!5.34!ZNF750;;chr11:65667884..65667895,-!p2@FOSL1!0.79!21.61!FOSL1;;chr3:169381420..169381535,-!p1@MECOM!0.79!6.10!MECOM;;chr6:21597514..21597578,+!p4@SOX4!0.78!8.90!SOX4;;chr4:1873216..1873238,+!p5@WHSC1!0.78!6.86!WHSC1;;chr13:79177703..79177729,-!p2@POU4F1!0.78!5.09!POU4F1;;chr14:105935576..105935594,+!p11@MTA1!0.78!5.09!MTA1;;chr17:48072574..48072597,-!p1@DLX3!0.78!5.09!DLX3;;chr19:2867325..2867348,+!p1@ZNF556!0.78!5.09!ZNF556;;chr19:9609272..9609297,-!p1@ZNF560!0.78!5.09!ZNF560;;chrY:2803415..2803468,+!p1@ZFY!0.77!4.83!ZFY;;chr1:935398..935465,-!p2@HES4!0.76!10.42!HES4;;chr14:75745523..75745537,+!p1@FOS!0.75!617.58!FOS;;chrX:131623044..131623089,-!p1@MBNL3!0.75!20.85!MBNL3;;chr6:10412392..104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Line 38: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bronchioalveolar%2520carcinoma%2520cell%2520line%253aNCI-H358.CNhs11840.10709-109H7.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bronchioalveolar%2520carcinoma%2520cell%2520line%253aNCI-H358.CNhs11840.10709-109H7.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/bronchioalveolar%2520carcinoma%2520cell%2520line%253aNCI-H358.CNhs11840.10709-109H7.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bronchioalveolar%2520carcinoma%2520cell%2520line%253aNCI-H358.CNhs11840.10709-109H7.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/bronchioalveolar%2520carcinoma%2520cell%2520line%253aNCI-H358.CNhs11840.10709-109H7.hg38.nobarcode.ctss.bed.gz
|id=FF:10709-109H7
|id=FF:10709-109H7
|is_a=EFO:0002091;;FF:0000210;;FF:0102060;;FF:0102835;;FF:0104802
|is_a=EFO:0002091;;FF:0000210;;FF:0102060;;FF:0102835;;FF:0104802
|is_obsolete=
|is_obsolete=
|library_id=CNhs11840
|library_id_phase_based=2:CNhs11840
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10709
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10709
|name=bronchioalveolar carcinoma cell line:NCI-H358
|name=bronchioalveolar carcinoma cell line:NCI-H358
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11840,LSID829,release010,COMPLETED
|profile_hcage=CNhs11840,LSID829,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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|sample_cell_line=NCI-H358
Line 83: Line 100:
|top_motifs=SNAI1..3:2.11130600758;ZEB1:1.72433434218;FOXL1:1.64719262825;NKX2-1,4:1.3923337432;CDC5L:1.35216086934;ZNF148:1.34556314538;PITX1..3:1.25896136874;MYOD1:1.15641941903;ZNF423:1.05848355349;bHLH_family:1.01538625011;ONECUT1,2:0.971071326376;E2F1..5:0.954287912941;NKX6-1,2:0.938827294487;NFY{A,B,C}:0.900505153049;SP1:0.848736847105;ZBTB16:0.83000069297;FOXQ1:0.824067658057;NKX2-3_NKX2-5:0.769442033409;FOXP1:0.713302766954;ELK1,4_GABP{A,B1}:0.692569886124;TFDP1:0.672338568732;RFX2..5_RFXANK_RFXAP:0.668023982949;PPARG:0.650453490425;POU2F1..3:0.649066334375;TLX1..3_NFIC{dimer}:0.593479370008;FOX{D1,D2}:0.582993914482;ARID5B:0.549472403374;NKX3-1:0.538618329601;RFX1:0.533433867277;TEF:0.527902995103;FOX{I1,J2}:0.511631471444;GFI1:0.459960942194;HOX{A4,D4}:0.458235544293;TEAD1:0.450492882738;PAX8:0.419418251418;XCPE1{core}:0.405819077683;HOX{A6,A7,B6,B7}:0.403818141128;RBPJ:0.39255373735;DBP:0.371198418633;VSX1,2:0.369910421271;BACH2:0.342086418962;SOX17:0.304912901027;NFE2:0.280031357407;CDX1,2,4:0.270895798884;BREu{core}:0.266523682698;FOS_FOS{B,L1}_JUN{B,D}:0.265471144926;TOPORS:0.262990569146;ZNF143:0.251215578213;NRF1:0.244548082784;FOSL2:0.237371490343;IKZF2:0.209858517148;T:0.209858428243;MYB:0.185060529566;AHR_ARNT_ARNT2:0.166973124173;SOX{8,9,10}:0.166165668973;TBX4,5:0.164107401939;NR6A1:0.131312753135;FOXM1:0.126893785767;OCT4_SOX2{dimer}:0.126734916016;ZFP161:0.121414234814;STAT1,3:0.115301090389;IRF7:0.109544510216;PAX6:0.0895689942871;FOXA2:0.0840120242452;AIRE:0.0738526880443;YY1:0.063476058192;SOX2:0.0476828226597;RORA:0.0420318883076;PDX1:0.0329266855587;TP53:0.0160930946785;POU1F1:-0.0150878521683;HNF4A_NR2F1,2:-0.0168174081385;EP300:-0.0192665171101;LMO2:-0.0477793302109;STAT5{A,B}:-0.0556027128687;FOXO1,3,4:-0.0577310270662;GLI1..3:-0.0851040612066;ATF5_CREB3:-0.0881127466987;HMGA1,2:-0.0909779316836;HAND1,2:-0.0911574258044;MEF2{A,B,C,D}:-0.0920435529591;NFIL3:-0.113266594462;ADNP_IRX_SIX_ZHX:-0.123020123337;NFIX:-0.141079931301;FOXD3:-0.14343587375;UFEwm:-0.143949020228;POU6F1:-0.150229932417;HNF1A:-0.151639098511;ZBTB6:-0.155241814414;POU3F1..4:-0.165795007311;TFCP2:-0.165913602915;DMAP1_NCOR{1,2}_SMARC:-0.171844676721;PAX4:-0.229418645935;NFKB1_REL_RELA:-0.244482262414;EGR1..3:-0.246738766328;PAX5:-0.251731441621;PAX1,9:-0.258022036286;PAX2:-0.263823529616;LEF1_TCF7_TCF7L1,2:-0.272691460877;IRF1,2:-0.278877744396;MED-1{core}:-0.288416828357;SRF:-0.292995165205;GTF2A1,2:-0.29316124726;ESR1:-0.295836377887;MTF1:-0.298360275088;ZIC1..3:-0.305418931279;FOX{F1,F2,J1}:-0.309916960496;REST:-0.310316485351;NR5A1,2:-0.313219503443;IKZF1:-0.315257283779;EVI1:-0.319486734378;MYBL2:-0.325259544122;CRX:-0.33200161909;AR:-0.343709719699;TFAP2B:-0.346024510803;ELF1,2,4:-0.352055727044;RXRA_VDR{dimer}:-0.361454299733;CEBPA,B_DDIT3:-0.36852094391;BPTF:-0.385355451187;EBF1:-0.389351471015;ALX1:-0.390150872697;JUN:-0.395069462326;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.407179126758;PRRX1,2:-0.424388782939;RUNX1..3:-0.432139812171;HIC1:-0.43396623113;HSF1,2:-0.43558030903;HOX{A5,B5}:-0.443902581442;HOXA9_MEIS1:-0.446495273857;FOXN1:-0.452250426923;HBP1_HMGB_SSRP1_UBTF:-0.459527536028;ATF2:-0.463402996467;PATZ1:-0.472279816373;SPIB:-0.475473415022;NFE2L2:-0.478873498139;RXR{A,B,G}:-0.487206665864;SOX5:-0.491034735039;RREB1:-0.494535160495;TFAP2{A,C}:-0.520224148729;MTE{core}:-0.522615451797;HLF:-0.524398987793;FOXP3:-0.525064047423;NANOG:-0.537436918385;CUX2:-0.540434394466;ETS1,2:-0.541041835646;STAT2,4,6:-0.565759657144;GTF2I:-0.568940156322;HIF1A:-0.595814546025;TBP:-0.596095687795;CREB1:-0.628275864284;GATA6:-0.636978599128;TFAP4:-0.637739024539;SPI1:-0.64652404285;MYFfamily:-0.671473029418;MAZ:-0.699218731988;PRDM1:-0.701017932826;POU5F1:-0.721306953486;NHLH1,2:-0.730195177912;ZNF384:-0.731264773885;ATF4:-0.735369528779;LHX3,4:-0.739029997046;KLF4:-0.74378489753;XBP1:-0.759007493191;PAX3,7:-0.761565683539;NKX3-2:-0.762582822606;ALX4:-0.793214868513;TLX2:-0.797877159086;GFI1B:-0.81192866364;MZF1:-0.81499574571;HMX1:-0.849107484221;GZF1:-0.905722287033;NR1H4:-0.953518156631;ATF6:-0.96484800806;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.973029720048;GATA4:-0.991658563282;NFATC1..3:-0.994390799456;EN1,2:-1.00839661303;TGIF1:-1.01098863604;NKX2-2,8:-1.02263037984;SREBF1,2:-1.05194390657;PBX1:-1.08585892689;TAL1_TCF{3,4,12}:-1.10593775934;NR3C1:-1.17865520735;NFE2L1:-1.22814995075;HES1:-1.30645345394;SPZ1:-1.39788396987;GCM1,2:-1.40512099372;ESRRA:-1.50291609172;SMAD1..7,9:-1.65519946476;ZNF238:-1.66641178611;MAFB:-1.74729907493;NANOG{mouse}:-2.09430285305
|top_motifs=SNAI1..3:2.11130600758;ZEB1:1.72433434218;FOXL1:1.64719262825;NKX2-1,4:1.3923337432;CDC5L:1.35216086934;ZNF148:1.34556314538;PITX1..3:1.25896136874;MYOD1:1.15641941903;ZNF423:1.05848355349;bHLH_family:1.01538625011;ONECUT1,2:0.971071326376;E2F1..5:0.954287912941;NKX6-1,2:0.938827294487;NFY{A,B,C}:0.900505153049;SP1:0.848736847105;ZBTB16:0.83000069297;FOXQ1:0.824067658057;NKX2-3_NKX2-5:0.769442033409;FOXP1:0.713302766954;ELK1,4_GABP{A,B1}:0.692569886124;TFDP1:0.672338568732;RFX2..5_RFXANK_RFXAP:0.668023982949;PPARG:0.650453490425;POU2F1..3:0.649066334375;TLX1..3_NFIC{dimer}:0.593479370008;FOX{D1,D2}:0.582993914482;ARID5B:0.549472403374;NKX3-1:0.538618329601;RFX1:0.533433867277;TEF:0.527902995103;FOX{I1,J2}:0.511631471444;GFI1:0.459960942194;HOX{A4,D4}:0.458235544293;TEAD1:0.450492882738;PAX8:0.419418251418;XCPE1{core}:0.405819077683;HOX{A6,A7,B6,B7}:0.403818141128;RBPJ:0.39255373735;DBP:0.371198418633;VSX1,2:0.369910421271;BACH2:0.342086418962;SOX17:0.304912901027;NFE2:0.280031357407;CDX1,2,4:0.270895798884;BREu{core}:0.266523682698;FOS_FOS{B,L1}_JUN{B,D}:0.265471144926;TOPORS:0.262990569146;ZNF143:0.251215578213;NRF1:0.244548082784;FOSL2:0.237371490343;IKZF2:0.209858517148;T:0.209858428243;MYB:0.185060529566;AHR_ARNT_ARNT2:0.166973124173;SOX{8,9,10}:0.166165668973;TBX4,5:0.164107401939;NR6A1:0.131312753135;FOXM1:0.126893785767;OCT4_SOX2{dimer}:0.126734916016;ZFP161:0.121414234814;STAT1,3:0.115301090389;IRF7:0.109544510216;PAX6:0.0895689942871;FOXA2:0.0840120242452;AIRE:0.0738526880443;YY1:0.063476058192;SOX2:0.0476828226597;RORA:0.0420318883076;PDX1:0.0329266855587;TP53:0.0160930946785;POU1F1:-0.0150878521683;HNF4A_NR2F1,2:-0.0168174081385;EP300:-0.0192665171101;LMO2:-0.0477793302109;STAT5{A,B}:-0.0556027128687;FOXO1,3,4:-0.0577310270662;GLI1..3:-0.0851040612066;ATF5_CREB3:-0.0881127466987;HMGA1,2:-0.0909779316836;HAND1,2:-0.0911574258044;MEF2{A,B,C,D}:-0.0920435529591;NFIL3:-0.113266594462;ADNP_IRX_SIX_ZHX:-0.123020123337;NFIX:-0.141079931301;FOXD3:-0.14343587375;UFEwm:-0.143949020228;POU6F1:-0.150229932417;HNF1A:-0.151639098511;ZBTB6:-0.155241814414;POU3F1..4:-0.165795007311;TFCP2:-0.165913602915;DMAP1_NCOR{1,2}_SMARC:-0.171844676721;PAX4:-0.229418645935;NFKB1_REL_RELA:-0.244482262414;EGR1..3:-0.246738766328;PAX5:-0.251731441621;PAX1,9:-0.258022036286;PAX2:-0.263823529616;LEF1_TCF7_TCF7L1,2:-0.272691460877;IRF1,2:-0.278877744396;MED-1{core}:-0.288416828357;SRF:-0.292995165205;GTF2A1,2:-0.29316124726;ESR1:-0.295836377887;MTF1:-0.298360275088;ZIC1..3:-0.305418931279;FOX{F1,F2,J1}:-0.309916960496;REST:-0.310316485351;NR5A1,2:-0.313219503443;IKZF1:-0.315257283779;EVI1:-0.319486734378;MYBL2:-0.325259544122;CRX:-0.33200161909;AR:-0.343709719699;TFAP2B:-0.346024510803;ELF1,2,4:-0.352055727044;RXRA_VDR{dimer}:-0.361454299733;CEBPA,B_DDIT3:-0.36852094391;BPTF:-0.385355451187;EBF1:-0.389351471015;ALX1:-0.390150872697;JUN:-0.395069462326;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.407179126758;PRRX1,2:-0.424388782939;RUNX1..3:-0.432139812171;HIC1:-0.43396623113;HSF1,2:-0.43558030903;HOX{A5,B5}:-0.443902581442;HOXA9_MEIS1:-0.446495273857;FOXN1:-0.452250426923;HBP1_HMGB_SSRP1_UBTF:-0.459527536028;ATF2:-0.463402996467;PATZ1:-0.472279816373;SPIB:-0.475473415022;NFE2L2:-0.478873498139;RXR{A,B,G}:-0.487206665864;SOX5:-0.491034735039;RREB1:-0.494535160495;TFAP2{A,C}:-0.520224148729;MTE{core}:-0.522615451797;HLF:-0.524398987793;FOXP3:-0.525064047423;NANOG:-0.537436918385;CUX2:-0.540434394466;ETS1,2:-0.541041835646;STAT2,4,6:-0.565759657144;GTF2I:-0.568940156322;HIF1A:-0.595814546025;TBP:-0.596095687795;CREB1:-0.628275864284;GATA6:-0.636978599128;TFAP4:-0.637739024539;SPI1:-0.64652404285;MYFfamily:-0.671473029418;MAZ:-0.699218731988;PRDM1:-0.701017932826;POU5F1:-0.721306953486;NHLH1,2:-0.730195177912;ZNF384:-0.731264773885;ATF4:-0.735369528779;LHX3,4:-0.739029997046;KLF4:-0.74378489753;XBP1:-0.759007493191;PAX3,7:-0.761565683539;NKX3-2:-0.762582822606;ALX4:-0.793214868513;TLX2:-0.797877159086;GFI1B:-0.81192866364;MZF1:-0.81499574571;HMX1:-0.849107484221;GZF1:-0.905722287033;NR1H4:-0.953518156631;ATF6:-0.96484800806;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.973029720048;GATA4:-0.991658563282;NFATC1..3:-0.994390799456;EN1,2:-1.00839661303;TGIF1:-1.01098863604;NKX2-2,8:-1.02263037984;SREBF1,2:-1.05194390657;PBX1:-1.08585892689;TAL1_TCF{3,4,12}:-1.10593775934;NR3C1:-1.17865520735;NFE2L1:-1.22814995075;HES1:-1.30645345394;SPZ1:-1.39788396987;GCM1,2:-1.40512099372;ESRRA:-1.50291609172;SMAD1..7,9:-1.65519946476;ZNF238:-1.66641178611;MAFB:-1.74729907493;NANOG{mouse}:-2.09430285305
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10709-109H7;search_select_hide=table117:FF:10709-109H7
}}
}}

Latest revision as of 14:34, 3 June 2020

Name:bronchioalveolar carcinoma cell line:NCI-H358
Species:Human (Homo sapiens)
Library ID:CNhs11840
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuelung
dev stageNA
sexmale
ageNA
cell typeclara cell
cell lineNCI-H358
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005844
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11840 CAGE DRX007840 DRR008712
Accession ID Hg19

Library idBAMCTSS
CNhs11840 DRZ000137 DRZ001522
Accession ID Hg38

Library idBAMCTSS
CNhs11840 DRZ011487 DRZ012872
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.321
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.38
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0428
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.217
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0413
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0386
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.305
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0631
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.246
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0984
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0819
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.384
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.00475
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.246
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11840

Jaspar motifP-value
MA0002.20.0794
MA0003.10.55
MA0004.10.936
MA0006.10.745
MA0007.10.867
MA0009.10.713
MA0014.10.0378
MA0017.10.55
MA0018.20.88
MA0019.10.76
MA0024.17.0464e-6
MA0025.10.825
MA0027.10.578
MA0028.17.24845e-4
MA0029.10.23
MA0030.10.265
MA0031.10.00397
MA0035.20.808
MA0038.10.00157
MA0039.21.92037e-4
MA0040.10.267
MA0041.10.62
MA0042.10.385
MA0043.10.308
MA0046.10.892
MA0047.20.0179
MA0048.10.809
MA0050.10.523
MA0051.10.269
MA0052.10.68
MA0055.10.00513
MA0057.10.67
MA0058.10.599
MA0059.10.987
MA0060.11.49316e-25
MA0061.10.00142
MA0062.20.0055
MA0065.20.0651
MA0066.10.331
MA0067.10.208
MA0068.10.00108
MA0069.10.48
MA0070.10.952
MA0071.10.418
MA0072.10.241
MA0073.10.831
MA0074.10.789
MA0076.10.00149
MA0077.10.354
MA0078.10.623
MA0079.20.442
MA0080.27.86247e-5
MA0081.10.0151
MA0083.10.238
MA0084.10.719
MA0087.10.669
MA0088.10.882
MA0090.10.989
MA0091.18.29043e-4
MA0092.10.0806
MA0093.10.847
MA0099.20.00216
MA0100.10.431
MA0101.10.0109
MA0102.20.739
MA0103.13.15677e-8
MA0104.20.0824
MA0105.15.56446e-4
MA0106.10.27
MA0107.10.00109
MA0108.20.78
MA0111.10.842
MA0112.20.639
MA0113.10.0238
MA0114.10.22
MA0115.10.335
MA0116.10.4
MA0117.10.0891
MA0119.10.112
MA0122.10.943
MA0124.10.471
MA0125.10.304
MA0131.10.819
MA0135.10.085
MA0136.10.0509
MA0137.20.434
MA0138.20.273
MA0139.10.015
MA0140.10.195
MA0141.10.2
MA0142.10.941
MA0143.10.99
MA0144.10.968
MA0145.10.42
MA0146.10.0308
MA0147.10.0526
MA0148.10.00528
MA0149.10.186
MA0150.10.92
MA0152.10.607
MA0153.10.764
MA0154.10.0016
MA0155.10.163
MA0156.10.455
MA0157.10.00574
MA0159.10.0592
MA0160.10.329
MA0162.10.823
MA0163.10.0918
MA0164.10.712
MA0258.10.697
MA0259.10.149



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11840

Novel motifP-value
10.699
100.446
1000.201
1010.841
1020.229
1030.999
1040.799
1050.67
1060.118
1070.454
1080.368
1090.264
110.56
1100.91
1110.497
1120.011
1130.511
1140.501
1150.752
1160.248
1170.186
1180.557
1190.826
120.479
1200.435
1210.926
1220.383
1230.246
1240.215
1250.753
1260.226
1270.765
1280.0945
1290.88
130.0427
1300.422
1310.248
1320.629
1330.0106
1340.171
1350.0185
1360.0723
1370.0469
1380.216
1390.382
140.297
1400.18
1410.985
1420.789
1430.831
1440.285
1450.377
1460.641
1470.64
1480.232
1490.447
150.795
1500.854
1510.89
1520.545
1530.104
1540.708
1550.261
1560.522
1570.769
1580.543
1590.576
160.633
1600.593
1610.445
1620.373
1630.889
1640.00447
1650.997
1660.274
1670.328
1680.127
1690.497
170.853
180.0183
190.108
20.752
200.292
210.781
220.742
230.00258
240.742
250.741
260.274
270.432
280.549
290.702
30.683
300.671
310.137
320.00159
330.104
340.029
350.0401
360.699
370.788
380.843
390.663
40.0412
400.0664
410.327
420.764
430.184
440.516
450.524
460.899
470.882
480.978
490.975
50.463
500.746
510.704
520.554
530.877
540.801
550.825
560.967
570.829
580.469
590.317
60.556
600.515
610.244
620.118
630.957
640.848
650.566
662.55021e-8
670.945
680.012
690.288
70.709
700.877
710.436
720.411
730.599
740.0389
750.353
760.712
770.147
780.181
790.0902
80.856
800.0683
810.0321
820.182
830.877
840.811
850.0128
860.677
870.0542
880.896
890.999
90.0328
900.531
910.156
920.316
930.467
940.283
950.263
960.356
970.698
980.408
990.93



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11840


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000322 (pneumocyte)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
0050615 (respiratory system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1324 (lung cancer)
305 (carcinoma)
1325 (bronchus cancer)
3905 (lung carcinoma)
3908 (non-small cell lung carcinoma)
3910 (lung adenocarcinoma)
3904 (bronchogenic carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0004821 (pulmonary alveolus epithelium)
0004903 (bronchoalveolar duct junction)
0000479 (tissue)
0000058 (duct)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0003914 (epithelial tube)
0007499 (epithelial sac)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000487 (simple squamous epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0003215 (alveolus)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0009856 (sac)
0010368 (pulmonary lobule)
0009911 (lobule)
0002299 (alveolus of lung)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
0006524 (alveolar system)
0008874 (pulmonary acinus)
0002169 (alveolar sac)
0004894 (alveolar wall)
0002173 (alveolar duct)
0002186 (bronchiole)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100353 (lung cell line sample)
0102061 (bronchogenic carcinoma cell sample)
0101120 (epithelial cell line sample)
0100762 (lung cancer cell line sample)
0102058 (non-small cell lung cancer cell sample)
0102057 (lung adenocarcinoma cell sample)
0102553 (non-small cell lung cancer cell line sample)
0102060 (bronchioalveolar carcinoma cell sample)
0104802 (bronchioloalveolar carcinoma cell sample)
0102835 (NCI-H358 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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