FF:11453-119A4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005472 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005472 | ||
|accession_numbers=CAGE;DRX008122;DRR008994;DRZ000419;DRZ001804;DRZ011769;DRZ013154 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037124;DRR041490;DRZ007132 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005178,UBERON:0000485,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0004815,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002031,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0002328 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000015 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11453-119A4 | |id=FF:11453-119A4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000015 | ||
|is_obsolete= | |||
|library_id=CNhs12054 | |||
|library_id_phase_based=2:CNhs12054 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11453 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTGAAA.11453 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11453 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.GTGAAA.11453 | |||
|name=Bronchial Epithelial Cell, donor4 | |name=Bronchial Epithelial Cell, donor4 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12054,LSID838,release011,COMPLETED | |profile_hcage=CNhs12054,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.122852262727471,0,0.17830799236595,0.710538951047645,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129847282465429,0,0,0,0.226570645286021,0,0.355183394303983,0,0,0.537074373375002,0,0,0,0,0,0,0,0,0,0,0,0,0.15608284205575,0.320832334918863,0,0,0.453141290572041,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.00587703905386108,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.283170292813857,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0620560133640373,0,0,0,0.075154617903222,-0.211197402695869,0,0,0,0,-0.0980353512377064,0.666554986261324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.283170292813857,0,0,0.227364932125649,0.372932761287145,0,0,0.10515063012018,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=CA502-R10a | |rna_catalog_number=CA502-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119A4 | |rna_tube_id=119A4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.GTGAAA | |||
|sample_age=20 | |sample_age=20 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.46809720034502e-228!GO:0005737;cytoplasm;3.59685072799206e-198!GO:0043226;organelle;3.01657517571332e-176!GO:0043229;intracellular organelle;7.48607864458825e-176!GO:0043231;intracellular membrane-bound organelle;4.01684996500371e-160!GO:0043227;membrane-bound organelle;6.50729685158697e-160!GO:0044422;organelle part;1.08509934542441e-148!GO:0044446;intracellular organelle part;2.75149949218336e-147!GO:0044444;cytoplasmic part;4.52588778844915e-133!GO:0032991;macromolecular complex;3.23162328276555e-103!GO:0030529;ribonucleoprotein complex;2.789403775057e-94!GO:0044237;cellular metabolic process;8.23017774272757e-83!GO:0005739;mitochondrion;5.64431299983152e-80!GO:0044238;primary metabolic process;1.10398919356062e-79!GO:0005515;protein binding;9.26758487391841e-71!GO:0043233;organelle lumen;9.60626281132215e-70!GO:0031974;membrane-enclosed lumen;9.60626281132215e-70!GO:0043170;macromolecule metabolic process;1.60965445635639e-68!GO:0044428;nuclear part;1.19017928718189e-65!GO:0003723;RNA binding;2.79265494108213e-62!GO:0005840;ribosome;6.89725017427717e-62!GO:0006412;translation;2.55368428577007e-58!GO:0009058;biosynthetic process;2.3456825061177e-56!GO:0003735;structural constituent of ribosome;4.80076659571968e-55!GO:0005634;nucleus;1.54399507471976e-54!GO:0019538;protein metabolic process;2.70177238491285e-53!GO:0044249;cellular biosynthetic process;6.67323692495847e-52!GO:0044429;mitochondrial part;2.77836268918727e-51!GO:0043234;protein complex;8.68011107404757e-51!GO:0031090;organelle membrane;2.13703861679167e-49!GO:0043228;non-membrane-bound organelle;3.39439188730379e-47!GO:0043232;intracellular non-membrane-bound organelle;3.39439188730379e-47!GO:0006396;RNA processing;3.74163553573033e-47!GO:0044267;cellular protein metabolic process;1.04462807378749e-46!GO:0033279;ribosomal subunit;1.04462807378749e-46!GO:0009059;macromolecule biosynthetic process;1.43930161146678e-46!GO:0044260;cellular macromolecule metabolic process;1.831591947562e-46!GO:0005829;cytosol;6.22382085588969e-44!GO:0031967;organelle envelope;2.15810222010361e-42!GO:0031975;envelope;5.10963279816136e-42!GO:0016043;cellular component organization and biogenesis;5.53623888635496e-42!GO:0031981;nuclear lumen;2.82164905006757e-40!GO:0015031;protein transport;6.39571780359988e-39!GO:0033036;macromolecule localization;6.60358016412377e-38!GO:0065003;macromolecular complex assembly;1.19126954347274e-35!GO:0045184;establishment of protein localization;1.26672458475025e-35!GO:0008104;protein localization;1.43752662782512e-35!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.48856821238407e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.87959543768383e-33!GO:0005740;mitochondrial envelope;1.31270587663377e-32!GO:0043283;biopolymer metabolic process;1.74955977149485e-32!GO:0016071;mRNA metabolic process;1.92965392367943e-32!GO:0008380;RNA splicing;7.46525633338285e-32!GO:0022607;cellular component assembly;4.42146349981811e-31!GO:0006996;organelle organization and biogenesis;6.46728086302284e-31!GO:0046907;intracellular transport;3.35032211702018e-30!GO:0031966;mitochondrial membrane;3.42424821927199e-30!GO:0006397;mRNA processing;1.66310608060174e-28!GO:0019866;organelle inner membrane;3.09754944934787e-28!GO:0006259;DNA metabolic process;1.75360729660228e-27!GO:0044445;cytosolic part;2.10568583468784e-27!GO:0006886;intracellular protein transport;4.82976144461431e-27!GO:0010467;gene expression;6.96468107909672e-27!GO:0005743;mitochondrial inner membrane;1.65118940807566e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.30939040578802e-25!GO:0015934;large ribosomal subunit;2.60023071571184e-24!GO:0015935;small ribosomal subunit;1.86996426939509e-23!GO:0006119;oxidative phosphorylation;1.97783970204057e-23!GO:0007049;cell cycle;3.65730683463872e-23!GO:0031980;mitochondrial lumen;3.65730683463872e-23!GO:0005759;mitochondrial matrix;3.65730683463872e-23!GO:0005681;spliceosome;6.7308939075815e-23!GO:0005654;nucleoplasm;1.7089622935828e-22!GO:0044455;mitochondrial membrane part;4.08811081955989e-22!GO:0000166;nucleotide binding;1.73265566899402e-20!GO:0016462;pyrophosphatase activity;2.68167548273502e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.64346578489037e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;4.36046369459874e-20!GO:0005730;nucleolus;1.74007155850822e-19!GO:0051649;establishment of cellular localization;3.20094243074622e-19!GO:0051641;cellular localization;3.75625317160474e-19!GO:0017111;nucleoside-triphosphatase activity;5.16941609832889e-19!GO:0012505;endomembrane system;1.50736286032005e-18!GO:0051186;cofactor metabolic process;2.12869682370945e-18!GO:0006457;protein folding;6.52688765061081e-18!GO:0022402;cell cycle process;1.02867129941372e-17!GO:0005746;mitochondrial respiratory chain;1.10182048730046e-17!GO:0005761;mitochondrial ribosome;1.346637002226e-17!GO:0000313;organellar ribosome;1.346637002226e-17!GO:0044451;nucleoplasm part;2.12783313871237e-17!GO:0022618;protein-RNA complex assembly;3.47210750813326e-17!GO:0000278;mitotic cell cycle;4.33898958612472e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.21610671686347e-17!GO:0005783;endoplasmic reticulum;6.8166658525449e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);8.9303611304368e-17!GO:0016874;ligase activity;9.06357397160365e-17!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.68835203394463e-16!GO:0000502;proteasome complex (sensu Eukaryota);2.00882146947942e-16!GO:0050136;NADH dehydrogenase (quinone) activity;2.14018076875834e-16!GO:0003954;NADH dehydrogenase activity;2.14018076875834e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.14018076875834e-16!GO:0042254;ribosome biogenesis and assembly;2.84637727805285e-16!GO:0048770;pigment granule;1.10828214261535e-15!GO:0042470;melanosome;1.10828214261535e-15!GO:0043285;biopolymer catabolic process;2.53095270069543e-15!GO:0006605;protein targeting;2.83952111584006e-15!GO:0006974;response to DNA damage stimulus;2.95031247902907e-15!GO:0032553;ribonucleotide binding;3.21938451164263e-15!GO:0032555;purine ribonucleotide binding;3.21938451164263e-15!GO:0017076;purine nucleotide binding;3.56191071250235e-15!GO:0009057;macromolecule catabolic process;5.15492994103527e-15!GO:0006732;coenzyme metabolic process;5.55597839808466e-15!GO:0044248;cellular catabolic process;5.58271693751024e-15!GO:0044265;cellular macromolecule catabolic process;5.58925862040768e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.06049069828721e-15!GO:0030964;NADH dehydrogenase complex (quinone);2.08847352590864e-14!GO:0045271;respiratory chain complex I;2.08847352590864e-14!GO:0005747;mitochondrial respiratory chain complex I;2.08847352590864e-14!GO:0012501;programmed cell death;2.43608858586078e-14!GO:0006512;ubiquitin cycle;2.57940367177743e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.77419017789852e-14!GO:0042773;ATP synthesis coupled electron transport;2.77419017789852e-14!GO:0044432;endoplasmic reticulum part;2.98242398197334e-14!GO:0006915;apoptosis;4.56926094854086e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;7.78654667705696e-14!GO:0008135;translation factor activity, nucleic acid binding;1.04858362559103e-13!GO:0009055;electron carrier activity;1.18565963190164e-13!GO:0043412;biopolymer modification;1.25611329582423e-13!GO:0005694;chromosome;2.13362277850152e-13!GO:0006399;tRNA metabolic process;2.13971449255745e-13!GO:0051082;unfolded protein binding;3.34550789743913e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;4.74765607810731e-13!GO:0000087;M phase of mitotic cell cycle;5.17909613106497e-13!GO:0005524;ATP binding;6.22907424933583e-13!GO:0007067;mitosis;6.46399815483515e-13!GO:0032559;adenyl ribonucleotide binding;6.62913057736102e-13!GO:0019941;modification-dependent protein catabolic process;7.1897227907004e-13!GO:0043632;modification-dependent macromolecule catabolic process;7.1897227907004e-13!GO:0030163;protein catabolic process;8.12388584078569e-13!GO:0030554;adenyl nucleotide binding;1.0280970923252e-12!GO:0044257;cellular protein catabolic process;1.04658219757862e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.30026458032333e-12!GO:0022403;cell cycle phase;1.93846242292035e-12!GO:0006281;DNA repair;2.18450682003175e-12!GO:0008219;cell death;2.20843010419869e-12!GO:0016265;death;2.20843010419869e-12!GO:0044427;chromosomal part;2.28056233158913e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;2.34295504990856e-12!GO:0000375;RNA splicing, via transesterification reactions;2.34295504990856e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.34295504990856e-12!GO:0006464;protein modification process;4.12992834426352e-12!GO:0008134;transcription factor binding;5.46578213981027e-12!GO:0006461;protein complex assembly;8.52084318450735e-12!GO:0005794;Golgi apparatus;9.36832518144368e-12!GO:0009719;response to endogenous stimulus;1.23082617634591e-11!GO:0009259;ribonucleotide metabolic process;1.39389952212695e-11!GO:0006260;DNA replication;1.76327336622592e-11!GO:0048193;Golgi vesicle transport;2.39098797964905e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.62212509231619e-11!GO:0000074;regulation of progression through cell cycle;3.71894465076071e-11!GO:0006364;rRNA processing;3.99541608627113e-11!GO:0003743;translation initiation factor activity;4.94010153845512e-11!GO:0005789;endoplasmic reticulum membrane;5.17908117949024e-11!GO:0051726;regulation of cell cycle;5.29328623750559e-11!GO:0006413;translational initiation;6.01678460703031e-11!GO:0016072;rRNA metabolic process;6.67516867154673e-11!GO:0006163;purine nucleotide metabolic process;8.03127243113555e-11!GO:0051276;chromosome organization and biogenesis;1.16390380501405e-10!GO:0009150;purine ribonucleotide metabolic process;1.17802625293216e-10!GO:0051188;cofactor biosynthetic process;1.19843170479576e-10!GO:0005635;nuclear envelope;1.34433879516924e-10!GO:0043067;regulation of programmed cell death;1.36900387946288e-10!GO:0042981;regulation of apoptosis;1.59505834333939e-10!GO:0016491;oxidoreductase activity;1.78680443908947e-10!GO:0009141;nucleoside triphosphate metabolic process;2.09330671727074e-10!GO:0009260;ribonucleotide biosynthetic process;2.61628952125171e-10!GO:0009056;catabolic process;2.83322511366206e-10!GO:0016887;ATPase activity;2.83322511366206e-10!GO:0042623;ATPase activity, coupled;2.85326301652486e-10!GO:0000279;M phase;2.85326301652486e-10!GO:0043687;post-translational protein modification;3.40063208163258e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;5.38327667414705e-10!GO:0006164;purine nucleotide biosynthetic process;6.4119342239647e-10!GO:0009199;ribonucleoside triphosphate metabolic process;7.6957384689646e-10!GO:0031965;nuclear membrane;8.30705840118466e-10!GO:0003676;nucleic acid binding;8.30705840118466e-10!GO:0006446;regulation of translational initiation;8.94036368002425e-10!GO:0009152;purine ribonucleotide biosynthetic process;8.99327551587593e-10!GO:0008565;protein transporter activity;9.02781337662747e-10!GO:0044453;nuclear membrane part;1.18445764298957e-09!GO:0051301;cell division;1.55127739249133e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.5612745554521e-09!GO:0006323;DNA packaging;1.5612745554521e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.73275107932053e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.73275107932053e-09!GO:0016604;nuclear body;1.84674066482481e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.984914863964e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.984914863964e-09!GO:0006913;nucleocytoplasmic transport;2.01833859725516e-09!GO:0000785;chromatin;2.30267326137044e-09!GO:0007005;mitochondrion organization and biogenesis;2.47264529702687e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.79089438615864e-09!GO:0004812;aminoacyl-tRNA ligase activity;2.79089438615864e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.79089438615864e-09!GO:0016192;vesicle-mediated transport;2.87924227173872e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.2298206463653e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.91572584210713e-09!GO:0065004;protein-DNA complex assembly;4.07534766808834e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.5839961645453e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.5839961645453e-09!GO:0051169;nuclear transport;4.78322274031788e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.44210022599301e-09!GO:0016740;transferase activity;8.77060804633184e-09!GO:0043038;amino acid activation;9.09373547814196e-09!GO:0006418;tRNA aminoacylation for protein translation;9.09373547814196e-09!GO:0043039;tRNA aminoacylation;9.09373547814196e-09!GO:0017038;protein import;1.06372729038557e-08!GO:0016787;hydrolase activity;1.43567024476022e-08!GO:0006334;nucleosome assembly;1.54356922936346e-08!GO:0006333;chromatin assembly or disassembly;1.58650303043506e-08!GO:0015986;ATP synthesis coupled proton transport;1.58650303043506e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.58650303043506e-08!GO:0009108;coenzyme biosynthetic process;1.62861363192947e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.96048089557319e-08!GO:0031497;chromatin assembly;3.66885880206528e-08!GO:0016779;nucleotidyltransferase activity;3.80795268623697e-08!GO:0043069;negative regulation of programmed cell death;3.81703975133763e-08!GO:0009117;nucleotide metabolic process;4.67423089007582e-08!GO:0030120;vesicle coat;5.88637446236819e-08!GO:0030662;coated vesicle membrane;5.88637446236819e-08!GO:0005793;ER-Golgi intermediate compartment;6.18313218695921e-08!GO:0046034;ATP metabolic process;6.63663801552541e-08!GO:0005643;nuclear pore;7.09705526037151e-08!GO:0005768;endosome;9.32203603935259e-08!GO:0004386;helicase activity;9.38473287574874e-08!GO:0043066;negative regulation of apoptosis;9.387797910155e-08!GO:0048475;coated membrane;9.80136719894307e-08!GO:0030117;membrane coat;9.80136719894307e-08!GO:0008639;small protein conjugating enzyme activity;9.82463541456344e-08!GO:0016070;RNA metabolic process;1.13008687252103e-07!GO:0065002;intracellular protein transport across a membrane;1.37365609377725e-07!GO:0006754;ATP biosynthetic process;1.63528874077584e-07!GO:0006753;nucleoside phosphate metabolic process;1.63528874077584e-07!GO:0003712;transcription cofactor activity;1.86117414177492e-07!GO:0006916;anti-apoptosis;1.98176626455593e-07!GO:0004842;ubiquitin-protein ligase activity;2.51325162713006e-07!GO:0019787;small conjugating protein ligase activity;2.58833022985501e-07!GO:0009060;aerobic respiration;2.59707465462434e-07!GO:0005762;mitochondrial large ribosomal subunit;2.6611335133442e-07!GO:0000315;organellar large ribosomal subunit;2.6611335133442e-07!GO:0005839;proteasome core complex (sensu Eukaryota);2.87114024863232e-07!GO:0008026;ATP-dependent helicase activity;3.00678371160894e-07!GO:0003924;GTPase activity;3.79090441307466e-07!GO:0006752;group transfer coenzyme metabolic process;3.79365104642006e-07!GO:0006091;generation of precursor metabolites and energy;4.36030948775533e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.1458200936669e-07!GO:0019829;cation-transporting ATPase activity;5.6961896493285e-07!GO:0048523;negative regulation of cellular process;5.6961896493285e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.74705587808664e-07!GO:0051246;regulation of protein metabolic process;6.04227310586672e-07!GO:0016607;nuclear speck;6.37986555855437e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;8.12967868464478e-07!GO:0046930;pore complex;9.14394541030055e-07!GO:0016881;acid-amino acid ligase activity;1.11913539478173e-06!GO:0043623;cellular protein complex assembly;1.16116697368805e-06!GO:0045259;proton-transporting ATP synthase complex;1.21027206345391e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.22106440759651e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.23396926105981e-06!GO:0004298;threonine endopeptidase activity;1.51004885816791e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.80771613435613e-06!GO:0045333;cellular respiration;2.99732501590258e-06!GO:0016853;isomerase activity;3.32656044865174e-06!GO:0003899;DNA-directed RNA polymerase activity;4.3745225016804e-06!GO:0006793;phosphorus metabolic process;5.27640743789575e-06!GO:0006796;phosphate metabolic process;5.27640743789575e-06!GO:0006099;tricarboxylic acid cycle;6.13205503995134e-06!GO:0046356;acetyl-CoA catabolic process;6.13205503995134e-06!GO:0048519;negative regulation of biological process;6.17538410012835e-06!GO:0000245;spliceosome assembly;6.73776595663583e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.84744049364381e-06!GO:0003697;single-stranded DNA binding;7.18297271878185e-06!GO:0008654;phospholipid biosynthetic process;8.489652254547e-06!GO:0008033;tRNA processing;8.83032553978077e-06!GO:0042802;identical protein binding;8.83929140561784e-06!GO:0006084;acetyl-CoA metabolic process;1.02789850151293e-05!GO:0000786;nucleosome;1.11829669792907e-05!GO:0051187;cofactor catabolic process;1.3236027105017e-05!GO:0008610;lipid biosynthetic process;1.32711551779936e-05!GO:0016126;sterol biosynthetic process;1.3290206389735e-05!GO:0051170;nuclear import;1.37884614739386e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.44554938791866e-05!GO:0043566;structure-specific DNA binding;1.49289353021893e-05!GO:0032446;protein modification by small protein conjugation;1.59565604464632e-05!GO:0000314;organellar small ribosomal subunit;1.61537690346598e-05!GO:0005763;mitochondrial small ribosomal subunit;1.61537690346598e-05!GO:0015630;microtubule cytoskeleton;1.66704391727038e-05!GO:0050657;nucleic acid transport;1.77551149716451e-05!GO:0051236;establishment of RNA localization;1.77551149716451e-05!GO:0050658;RNA transport;1.77551149716451e-05!GO:0006403;RNA localization;2.04891032536093e-05!GO:0009109;coenzyme catabolic process;2.07628765259804e-05!GO:0006366;transcription from RNA polymerase II promoter;2.14063238385804e-05!GO:0016567;protein ubiquitination;2.14518962172719e-05!GO:0048522;positive regulation of cellular process;2.25869932412563e-05!GO:0006606;protein import into nucleus;2.27642008571217e-05!GO:0016310;phosphorylation;2.86089175152424e-05!GO:0044431;Golgi apparatus part;2.9063874038617e-05!GO:0019843;rRNA binding;2.91422576188966e-05!GO:0044440;endosomal part;3.61844955424563e-05!GO:0010008;endosome membrane;3.61844955424563e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.28997677645047e-05!GO:0006082;organic acid metabolic process;5.8836090143034e-05!GO:0005770;late endosome;6.29812352468015e-05!GO:0044452;nucleolar part;7.21406315544329e-05!GO:0019752;carboxylic acid metabolic process;7.43055886751097e-05!GO:0005525;GTP binding;7.44354625587803e-05!GO:0065009;regulation of a molecular function;7.44798897747383e-05!GO:0006261;DNA-dependent DNA replication;8.27639965954712e-05!GO:0031968;organelle outer membrane;8.81424125030681e-05!GO:0045454;cell redox homeostasis;8.97407956043291e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;9.16488356736112e-05!GO:0045786;negative regulation of progression through cell cycle;9.38478090752947e-05!GO:0051329;interphase of mitotic cell cycle;0.000102230175192974!GO:0005819;spindle;0.000107329028032453!GO:0006613;cotranslational protein targeting to membrane;0.000113909132736709!GO:0007088;regulation of mitosis;0.000115047299327659!GO:0019867;outer membrane;0.000119957771736395!GO:0005667;transcription factor complex;0.000121137646288081!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000127384869619289!GO:0016568;chromatin modification;0.000139289615442368!GO:0030118;clathrin coat;0.00014256509372449!GO:0003724;RNA helicase activity;0.000155617145810133!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000155915006953909!GO:0031252;leading edge;0.000169007908452382!GO:0005741;mitochondrial outer membrane;0.000178913962103284!GO:0006626;protein targeting to mitochondrion;0.000197929938860426!GO:0019899;enzyme binding;0.000203663187983841!GO:0046474;glycerophospholipid biosynthetic process;0.000203663187983841!GO:0006695;cholesterol biosynthetic process;0.00021038337900276!GO:0051427;hormone receptor binding;0.00021660477284996!GO:0051325;interphase;0.000220900750311511!GO:0005788;endoplasmic reticulum lumen;0.000221576626847323!GO:0000139;Golgi membrane;0.000233036497028784!GO:0043021;ribonucleoprotein binding;0.000259144983863178!GO:0030867;rough endoplasmic reticulum membrane;0.000274712807154465!GO:0030132;clathrin coat of coated pit;0.000283897480258679!GO:0005905;coated pit;0.000286486927949895!GO:0009165;nucleotide biosynthetic process;0.000288965757502878!GO:0051028;mRNA transport;0.000301528930626728!GO:0009967;positive regulation of signal transduction;0.000319717651617205!GO:0043681;protein import into mitochondrion;0.000336653485242904!GO:0016023;cytoplasmic membrane-bound vesicle;0.000342293704620131!GO:0006839;mitochondrial transport;0.000365958678030815!GO:0007006;mitochondrial membrane organization and biogenesis;0.00038076918641044!GO:0000151;ubiquitin ligase complex;0.000383154387903639!GO:0003684;damaged DNA binding;0.000389253665886447!GO:0005813;centrosome;0.000411275216563201!GO:0031988;membrane-bound vesicle;0.000412602137440772!GO:0006118;electron transport;0.000412784142408448!GO:0035257;nuclear hormone receptor binding;0.000428588326950064!GO:0000075;cell cycle checkpoint;0.00043306435947446!GO:0048471;perinuclear region of cytoplasm;0.000458921111480523!GO:0005769;early endosome;0.000465027711728694!GO:0005798;Golgi-associated vesicle;0.000467946721902852!GO:0008632;apoptotic program;0.000480153365878076!GO:0005773;vacuole;0.000567643698285945!GO:0043065;positive regulation of apoptosis;0.000587603919137684!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000615220850022001!GO:0003713;transcription coactivator activity;0.000663232481644322!GO:0030119;AP-type membrane coat adaptor complex;0.000682554750818563!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000688935011561999!GO:0005791;rough endoplasmic reticulum;0.000688999766029979!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000691406603247643!GO:0043068;positive regulation of programmed cell death;0.000695580689397043!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000703060196786799!GO:0006979;response to oxidative stress;0.000707584436367978!GO:0046489;phosphoinositide biosynthetic process;0.000735258922375826!GO:0005815;microtubule organizing center;0.000809806341690749!GO:0032561;guanyl ribonucleotide binding;0.000817465562488984!GO:0019001;guanyl nucleotide binding;0.000817465562488984!GO:0030131;clathrin adaptor complex;0.000878328538462193!GO:0051920;peroxiredoxin activity;0.000917498913431454!GO:0030658;transport vesicle membrane;0.000968083533152274!GO:0030176;integral to endoplasmic reticulum membrane;0.000968083533152274!GO:0030880;RNA polymerase complex;0.000977345392700909!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00100832871785085!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00100843823613173!GO:0007243;protein kinase cascade;0.00101901591796033!GO:0030125;clathrin vesicle coat;0.00109936493707235!GO:0030665;clathrin coated vesicle membrane;0.00109936493707235!GO:0033116;ER-Golgi intermediate compartment membrane;0.0011046082253274!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00111917129949262!GO:0048518;positive regulation of biological process;0.00114017597465238!GO:0006520;amino acid metabolic process;0.0011611112123188!GO:0005885;Arp2/3 protein complex;0.00120084268768704!GO:0015992;proton transport;0.00125268108481423!GO:0006383;transcription from RNA polymerase III promoter;0.00126289241484692!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00126289241484692!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00126289241484692!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00126289241484692!GO:0016859;cis-trans isomerase activity;0.00133289612181415!GO:0006612;protein targeting to membrane;0.00133462055570214!GO:0016044;membrane organization and biogenesis;0.00135336110414028!GO:0006818;hydrogen transport;0.00151863702292167!GO:0050662;coenzyme binding;0.00155282962135222!GO:0005856;cytoskeleton;0.00158861630615496!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00160969197233044!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00161215878143301!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00161694721541687!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00162363121819075!GO:0015399;primary active transmembrane transporter activity;0.00162363121819075!GO:0008250;oligosaccharyl transferase complex;0.00163508045940172!GO:0006414;translational elongation;0.00170331129189163!GO:0003714;transcription corepressor activity;0.00174606513999052!GO:0006950;response to stress;0.00174624847895086!GO:0004576;oligosaccharyl transferase activity;0.0017536040689084!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00183910738245692!GO:0031324;negative regulation of cellular metabolic process;0.00185874145640579!GO:0046483;heterocycle metabolic process;0.00187693222089285!GO:0048144;fibroblast proliferation;0.00194135635936711!GO:0048145;regulation of fibroblast proliferation;0.00194135635936711!GO:0005657;replication fork;0.00194135635936711!GO:0004518;nuclease activity;0.00196051802761791!GO:0051252;regulation of RNA metabolic process;0.00205477135705193!GO:0008094;DNA-dependent ATPase activity;0.00210170558922751!GO:0000775;chromosome, pericentric region;0.00212932660622577!GO:0048468;cell development;0.00217061826351391!GO:0008186;RNA-dependent ATPase activity;0.00217540608759658!GO:0005684;U2-dependent spliceosome;0.00228431583359676!GO:0003729;mRNA binding;0.0023864628203454!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00239490631750824!GO:0000428;DNA-directed RNA polymerase complex;0.00239490631750824!GO:0046467;membrane lipid biosynthetic process;0.00241469278933025!GO:0016564;transcription repressor activity;0.00241802129590013!GO:0048146;positive regulation of fibroblast proliferation;0.00242990884662649!GO:0007051;spindle organization and biogenesis;0.002430302259627!GO:0015980;energy derivation by oxidation of organic compounds;0.00252119987498568!GO:0000323;lytic vacuole;0.00255496468167074!GO:0005764;lysosome;0.00255496468167074!GO:0031982;vesicle;0.00260069288881027!GO:0048037;cofactor binding;0.00261108584102335!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00263971337349472!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00263971337349472!GO:0005048;signal sequence binding;0.00265936726119418!GO:0030660;Golgi-associated vesicle membrane;0.0026903389543933!GO:0016125;sterol metabolic process;0.00271265213826991!GO:0031410;cytoplasmic vesicle;0.00273544553015674!GO:0016363;nuclear matrix;0.00279367430425496!GO:0003690;double-stranded DNA binding;0.00283785139978178!GO:0050794;regulation of cellular process;0.00283785139978178!GO:0043488;regulation of mRNA stability;0.0029616485826591!GO:0043487;regulation of RNA stability;0.0029616485826591!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0030259577790845!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00307658209064036!GO:0050790;regulation of catalytic activity;0.00311792142536556!GO:0016563;transcription activator activity;0.0031286388357608!GO:0006650;glycerophospholipid metabolic process;0.003204261945071!GO:0031072;heat shock protein binding;0.00363564011277666!GO:0007010;cytoskeleton organization and biogenesis;0.00375376880488018!GO:0044255;cellular lipid metabolic process;0.00379440045527554!GO:0008139;nuclear localization sequence binding;0.00383569869229461!GO:0008092;cytoskeletal protein binding;0.00399183080571176!GO:0006402;mRNA catabolic process;0.00401105857782629!GO:0006595;polyamine metabolic process;0.0040724979078408!GO:0030036;actin cytoskeleton organization and biogenesis;0.00411771305080639!GO:0006917;induction of apoptosis;0.00417356621317077!GO:0004527;exonuclease activity;0.00423894899994667!GO:0030031;cell projection biogenesis;0.00428224426673764!GO:0051540;metal cluster binding;0.00437349720029365!GO:0051536;iron-sulfur cluster binding;0.00437349720029365!GO:0000059;protein import into nucleus, docking;0.00446056178492636!GO:0008637;apoptotic mitochondrial changes;0.0045349189589359!GO:0007264;small GTPase mediated signal transduction;0.00458870482111735!GO:0006289;nucleotide-excision repair;0.00461328191363877!GO:0000049;tRNA binding;0.0046181068558039!GO:0044262;cellular carbohydrate metabolic process;0.00468157766546943!GO:0004004;ATP-dependent RNA helicase activity;0.0046898407055985!GO:0051098;regulation of binding;0.00473125897677642!GO:0001726;ruffle;0.0047969116895566!GO:0051168;nuclear export;0.00484928106388986!GO:0006730;one-carbon compound metabolic process;0.00487574732156959!GO:0008629;induction of apoptosis by intracellular signals;0.00491327464753368!GO:0016272;prefoldin complex;0.0050389278836714!GO:0006401;RNA catabolic process;0.00521034683104258!GO:0006066;alcohol metabolic process;0.00529885041245837!GO:0012502;induction of programmed cell death;0.00546102324153291!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.00553497290391178!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00556629916294826!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00606043902428545!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00614809912278444!GO:0006284;base-excision repair;0.00614809912278444!GO:0051789;response to protein stimulus;0.00628027154538843!GO:0006986;response to unfolded protein;0.00628027154538843!GO:0030384;phosphoinositide metabolic process;0.00668097690559326!GO:0009116;nucleoside metabolic process;0.0068506212747689!GO:0009892;negative regulation of metabolic process;0.00717880495269592!GO:0032508;DNA duplex unwinding;0.00729039171910111!GO:0032392;DNA geometric change;0.00729039171910111!GO:0017166;vinculin binding;0.00733093578829117!GO:0030663;COPI coated vesicle membrane;0.00736594866859736!GO:0030126;COPI vesicle coat;0.00736594866859736!GO:0051101;regulation of DNA binding;0.00736594866859736!GO:0018196;peptidyl-asparagine modification;0.00736594866859736!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00736594866859736!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00743626746127525!GO:0006506;GPI anchor biosynthetic process;0.00751123664846964!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00758291270459!GO:0005149;interleukin-1 receptor binding;0.00766721381952293!GO:0006778;porphyrin metabolic process;0.0077957465749083!GO:0033013;tetrapyrrole metabolic process;0.0077957465749083!GO:0015631;tubulin binding;0.00814412865727128!GO:0000287;magnesium ion binding;0.00817057843821!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00849458257958133!GO:0015002;heme-copper terminal oxidase activity;0.00849458257958133!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00849458257958133!GO:0004129;cytochrome-c oxidase activity;0.00849458257958133!GO:0030659;cytoplasmic vesicle membrane;0.00850339837403674!GO:0046822;regulation of nucleocytoplasmic transport;0.00860994230420045!GO:0016741;transferase activity, transferring one-carbon groups;0.00878749457868663!GO:0008168;methyltransferase activity;0.00886416752573197!GO:0006007;glucose catabolic process;0.00912285947000417!GO:0048500;signal recognition particle;0.00947789984222747!GO:0043284;biopolymer biosynthetic process;0.00991048170307531!GO:0043022;ribosome binding;0.0101039228881541!GO:0051087;chaperone binding;0.0103712414862006!GO:0030133;transport vesicle;0.0105416885649581!GO:0006611;protein export from nucleus;0.0105416885649581!GO:0008180;signalosome;0.0108545162651904!GO:0043492;ATPase activity, coupled to movement of substances;0.0108753838406923!GO:0051052;regulation of DNA metabolic process;0.011016765326557!GO:0031902;late endosome membrane;0.0110311447920522!GO:0006505;GPI anchor metabolic process;0.0110848383257359!GO:0051287;NAD binding;0.0112584317018972!GO:0006268;DNA unwinding during replication;0.0115038657358076!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0116611173598579!GO:0005874;microtubule;0.0117193186817681!GO:0007093;mitotic cell cycle checkpoint;0.0120997395311176!GO:0003746;translation elongation factor activity;0.0127777958427993!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0128205209624612!GO:0031529;ruffle organization and biogenesis;0.0130930974205785!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0133007667537208!GO:0006302;double-strand break repair;0.0133491636107623!GO:0030137;COPI-coated vesicle;0.0133966534417081!GO:0005637;nuclear inner membrane;0.0134256412904445!GO:0009451;RNA modification;0.0134606468067277!GO:0005832;chaperonin-containing T-complex;0.0135208109941565!GO:0006779;porphyrin biosynthetic process;0.0143217757470233!GO:0033014;tetrapyrrole biosynthetic process;0.0143217757470233!GO:0001836;release of cytochrome c from mitochondria;0.0147499861399566!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0148478145234808!GO:0006749;glutathione metabolic process;0.0150221564564378!GO:0008022;protein C-terminus binding;0.0151861743177739!GO:0000082;G1/S transition of mitotic cell cycle;0.0153641837642505!GO:0030029;actin filament-based process;0.0153641837642505!GO:0006891;intra-Golgi vesicle-mediated transport;0.0155131827971713!GO:0003711;transcription elongation regulator activity;0.0155891520301803!GO:0006733;oxidoreduction coenzyme metabolic process;0.0157600123785887!GO:0051539;4 iron, 4 sulfur cluster binding;0.0158210527664209!GO:0009166;nucleotide catabolic process;0.0162304504503541!GO:0008312;7S RNA binding;0.0162340670689547!GO:0045334;clathrin-coated endocytic vesicle;0.0162514891531528!GO:0030134;ER to Golgi transport vesicle;0.0168248844321024!GO:0030145;manganese ion binding;0.0170320999552068!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0173409258709157!GO:0035258;steroid hormone receptor binding;0.0173716060738773!GO:0006417;regulation of translation;0.0175951099917417!GO:0006740;NADPH regeneration;0.0180055571104747!GO:0006098;pentose-phosphate shunt;0.0180055571104747!GO:0022890;inorganic cation transmembrane transporter activity;0.0185370027352996!GO:0016197;endosome transport;0.0186695634427498!GO:0000209;protein polyubiquitination;0.018713682417977!GO:0043154;negative regulation of caspase activity;0.0189311247251319!GO:0000178;exosome (RNase complex);0.0189311247251319!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0189311247251319!GO:0045047;protein targeting to ER;0.0189311247251319!GO:0003678;DNA helicase activity;0.0189811493400312!GO:0004549;tRNA-specific ribonuclease activity;0.0197064052751555!GO:0005758;mitochondrial intermembrane space;0.0205681925641136!GO:0009112;nucleobase metabolic process;0.0207309364312655!GO:0050178;phenylpyruvate tautomerase activity;0.0207834008000032!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0210146085838927!GO:0006497;protein amino acid lipidation;0.0211083584064321!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0214682364683404!GO:0008299;isoprenoid biosynthetic process;0.0216154308216398!GO:0006509;membrane protein ectodomain proteolysis;0.0216154308216398!GO:0033619;membrane protein proteolysis;0.0216154308216398!GO:0005869;dynactin complex;0.0220131726656969!GO:0004532;exoribonuclease activity;0.0220715041412563!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0220715041412563!GO:0006519;amino acid and derivative metabolic process;0.022169685426557!GO:0016481;negative regulation of transcription;0.022169685426557!GO:0007021;tubulin folding;0.022169685426557!GO:0016408;C-acyltransferase activity;0.0223164338487258!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0226072700612425!GO:0010257;NADH dehydrogenase complex assembly;0.0226072700612425!GO:0033108;mitochondrial respiratory chain complex assembly;0.0226072700612425!GO:0006352;transcription initiation;0.0228234159317902!GO:0006643;membrane lipid metabolic process;0.0231274837886394!GO:0031272;regulation of pseudopodium formation;0.0231840257378849!GO:0031269;pseudopodium formation;0.0231840257378849!GO:0031344;regulation of cell projection organization and biogenesis;0.0231840257378849!GO:0031268;pseudopodium organization and biogenesis;0.0231840257378849!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0231840257378849!GO:0031274;positive regulation of pseudopodium formation;0.0231840257378849!GO:0048487;beta-tubulin binding;0.0232803875849479!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0235154086491582!GO:0030032;lamellipodium biogenesis;0.0239851194467839!GO:0051338;regulation of transferase activity;0.0244711101527934!GO:0008652;amino acid biosynthetic process;0.0246303023385588!GO:0042168;heme metabolic process;0.0248365822598071!GO:0009303;rRNA transcription;0.0249942096719538!GO:0044433;cytoplasmic vesicle part;0.0251223842817104!GO:0016791;phosphoric monoester hydrolase activity;0.0256428542320317!GO:0005732;small nucleolar ribonucleoprotein complex;0.0260904489711152!GO:0007050;cell cycle arrest;0.0263252167306894!GO:0008538;proteasome activator activity;0.0268850775465454!GO:0000776;kinetochore;0.0271894665661908!GO:0000030;mannosyltransferase activity;0.0272172469300679!GO:0030128;clathrin coat of endocytic vesicle;0.0273787940777148!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0273787940777148!GO:0030122;AP-2 adaptor complex;0.0273787940777148!GO:0005774;vacuolar membrane;0.0274724583584523!GO:0046519;sphingoid metabolic process;0.0280622675102359!GO:0006376;mRNA splice site selection;0.0284851203409805!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0284851203409805!GO:0004128;cytochrome-b5 reductase activity;0.0287113117574915!GO:0031124;mRNA 3'-end processing;0.0290712507024333!GO:0004674;protein serine/threonine kinase activity;0.0295606792734053!GO:0030127;COPII vesicle coat;0.0296091044072213!GO:0012507;ER to Golgi transport vesicle membrane;0.0296091044072213!GO:0043414;biopolymer methylation;0.0298122883125761!GO:0008203;cholesterol metabolic process;0.0300812969395209!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0306176295675303!GO:0030027;lamellipodium;0.0312076286485103!GO:0006144;purine base metabolic process;0.0315852804211438!GO:0006644;phospholipid metabolic process;0.0315852804211438!GO:0007346;regulation of progression through mitotic cell cycle;0.0318244703150136!GO:0030911;TPR domain binding;0.0319644458104812!GO:0030833;regulation of actin filament polymerization;0.0322503414412932!GO:0008408;3'-5' exonuclease activity;0.0323878968980568!GO:0031371;ubiquitin conjugating enzyme complex;0.0323878968980568!GO:0005862;muscle thin filament tropomyosin;0.0325312408515474!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0327783149290845!GO:0016584;nucleosome positioning;0.033164643813595!GO:0046365;monosaccharide catabolic process;0.0333710121434029!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0337830771872689!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0340088653607019!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0340202922882346!GO:0016653;oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor;0.0340741797074567!GO:0035035;histone acetyltransferase binding;0.0342187436462601!GO:0004526;ribonuclease P activity;0.0343253915808881!GO:0051272;positive regulation of cell motility;0.0348523821251268!GO:0040017;positive regulation of locomotion;0.0348523821251268!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0352557713287394!GO:0051128;regulation of cellular component organization and biogenesis;0.0352930474791302!GO:0006310;DNA recombination;0.0358208499023048!GO:0019318;hexose metabolic process;0.0358521962345665!GO:0042158;lipoprotein biosynthetic process;0.0361281271099128!GO:0006354;RNA elongation;0.0363011231339661!GO:0000339;RNA cap binding;0.0363223842773517!GO:0005996;monosaccharide metabolic process;0.0368879177254571!GO:0008426;protein kinase C inhibitor activity;0.0369759981288297!GO:0051716;cellular response to stimulus;0.0369902992041562!GO:0016860;intramolecular oxidoreductase activity;0.0371669860706465!GO:0030216;keratinocyte differentiation;0.0375201208595203!GO:0006275;regulation of DNA replication;0.0375465303026285!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0376338671640802!GO:0008213;protein amino acid alkylation;0.0376732632594018!GO:0006479;protein amino acid methylation;0.0376732632594018!GO:0035267;NuA4 histone acetyltransferase complex;0.0376732632594018!GO:0016407;acetyltransferase activity;0.0376969086815888!GO:0046426;negative regulation of JAK-STAT cascade;0.0378759446376881!GO:0016835;carbon-oxygen lyase activity;0.0380620759788183!GO:0043189;H4/H2A histone acetyltransferase complex;0.038356894808808!GO:0030521;androgen receptor signaling pathway;0.0387451626703985!GO:0006458;'de novo' protein folding;0.0392645365031697!GO:0051084;'de novo' posttranslational protein folding;0.0392645365031697!GO:0007034;vacuolar transport;0.0393049373599374!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0393891306826194!GO:0032259;methylation;0.0401100615353239!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0401100615353239!GO:0012510;trans-Golgi network transport vesicle membrane;0.0401100615353239!GO:0031625;ubiquitin protein ligase binding;0.0403389634600434!GO:0042770;DNA damage response, signal transduction;0.0403389634600434!GO:0009119;ribonucleoside metabolic process;0.0407802940378982!GO:0016417;S-acyltransferase activity;0.0407837600163285!GO:0006720;isoprenoid metabolic process;0.0410909809772993!GO:0043549;regulation of kinase activity;0.0421318779253535!GO:0008017;microtubule binding;0.04224618509176!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.042745482225539!GO:0008283;cell proliferation;0.0429810737121925!GO:0030503;regulation of cell redox homeostasis;0.0429810737121925!GO:0006629;lipid metabolic process;0.0430583623540769!GO:0051881;regulation of mitochondrial membrane potential;0.0430583623540769!GO:0031301;integral to organelle membrane;0.0431600642886179!GO:0031326;regulation of cellular biosynthetic process;0.0435824398487834!GO:0008243;plasminogen activator activity;0.0441430023764255!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0441430023764255!GO:0000792;heterochromatin;0.0441478319494905!GO:0030508;thiol-disulfide exchange intermediate activity;0.0441478319494905!GO:0006596;polyamine biosynthetic process;0.0443909664433291!GO:0006783;heme biosynthetic process;0.0450699217625029!GO:0004680;casein kinase activity;0.045357656056991!GO:0015036;disulfide oxidoreductase activity;0.0458934165601106!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0462626748499783!GO:0009124;nucleoside monophosphate biosynthetic process;0.0464942230585267!GO:0009123;nucleoside monophosphate metabolic process;0.0464942230585267!GO:0007040;lysosome organization and biogenesis;0.0468053818663057!GO:0009889;regulation of biosynthetic process;0.0472113209509743!GO:0046039;GTP metabolic process;0.0474297729036226!GO:0006183;GTP biosynthetic process;0.0474297729036226!GO:0000096;sulfur amino acid metabolic process;0.0477187317328674!GO:0009161;ribonucleoside monophosphate metabolic process;0.048556044584337!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.048556044584337!GO:0006308;DNA catabolic process;0.048556044584337!GO:0019320;hexose catabolic process;0.048556044584337!GO:0055092;sterol homeostasis;0.0486623913442947!GO:0042632;cholesterol homeostasis;0.0486623913442947!GO:0044437;vacuolar part;0.0486623913442947!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0487356248203833!GO:0004448;isocitrate dehydrogenase activity;0.0489393329219419!GO:0003682;chromatin binding;0.0499418548800281!GO:0012506;vesicle membrane;0.0499701868771499 | |||
|sample_id=11453 | |sample_id=11453 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=PPARG:2.51016496887;NR5A1,2:2.47466840946;TP53:2.38509655325;POU2F1..3:2.14712405396;VSX1,2:1.8612811267;TBX4,5:1.68703432619;ZEB1:1.68108265608;SNAI1..3:1.58990274903;NKX2-3_NKX2-5:1.39059873034;ZNF148:1.38111726694;MYOD1:1.19106403608;TBP:1.1775867697;HAND1,2:1.00462749178;IKZF1:0.993720045574;ZNF423:0.975010630055;PAX1,9:0.927019630365;HMX1:0.914078385619;ADNP_IRX_SIX_ZHX:0.900967425156;TFCP2:0.893037459499;XCPE1{core}:0.872466695288;TEAD1:0.785403303583;FOXQ1:0.746927068806;RBPJ:0.693877903939;NANOG:0.683201537444;ARID5B:0.677016004501;STAT5{A,B}:0.675606341898;LEF1_TCF7_TCF7L1,2:0.6592579442;ONECUT1,2:0.635637544563;FOS_FOS{B,L1}_JUN{B,D}:0.631662179641;GLI1..3:0.621382197122;TFAP2{A,C}:0.614757692348;NFIL3:0.613932660619;SP1:0.572612236277;POU3F1..4:0.562020334163;AR:0.559232865313;bHLH_family:0.543106132702;HIF1A:0.534965792076;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.528647494219;ELK1,4_GABP{A,B1}:0.512421752273;BACH2:0.498149792711;REST:0.491729555593;ESR1:0.47213941488;FOXL1:0.457433869968;SOX{8,9,10}:0.451043618235;GFI1:0.430380822944;GTF2A1,2:0.429402963252;EP300:0.422648107757;FOXM1:0.361044356922;TLX1..3_NFIC{dimer}:0.332545337637;LHX3,4:0.318872098934;ZNF143:0.315705946986;FOSL2:0.314080331261;PBX1:0.31085932552;TFAP4:0.29424627313;YY1:0.267812312113;ELF1,2,4:0.244378372586;NKX2-2,8:0.235233295017;E2F1..5:0.233647913985;ZBTB6:0.233594030336;HLF:0.226814168657;MTF1:0.224191632189;ZIC1..3:0.220955577968;EBF1:0.218390773528;GFI1B:0.201249749547;ZNF238:0.197242738401;PAX2:0.178723057953;RXR{A,B,G}:0.170318786875;OCT4_SOX2{dimer}:0.168921803864;SOX17:0.145777700439;NFE2:0.134474878863;NFY{A,B,C}:0.131742729269;LMO2:0.12591668868;HNF4A_NR2F1,2:0.102420843008;TLX2:0.0970228322883;HOX{A5,B5}:0.0951002586735;RXRA_VDR{dimer}:0.0839140556127;GCM1,2:0.0799251775054;GATA6:0.0459128565717;CEBPA,B_DDIT3:0.0440336743595;ESRRA:0.0409552585798;POU1F1:0.0282506404632;GZF1:0.00222988212501;POU6F1:-0.0188424265183;PAX8:-0.0469297401059;NKX3-2:-0.049177206616;FOX{F1,F2,J1}:-0.0540823741088;CRX:-0.0591766730292;NANOG{mouse}:-0.064545267152;NRF1:-0.0683891989532;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0689298612245;CDC5L:-0.0733284066209;POU5F1:-0.0772807401568;NFKB1_REL_RELA:-0.084099557285;HES1:-0.10790652777;MYB:-0.137645395837;HSF1,2:-0.177272967895;ETS1,2:-0.195252377689;TFDP1:-0.201790874687;SPZ1:-0.205151551377;HOXA9_MEIS1:-0.20570490752;T:-0.223042982925;JUN:-0.272292425475;FOX{I1,J2}:-0.275229258338;STAT2,4,6:-0.2837913822;PAX5:-0.295544247744;MAZ:-0.314912866688;HNF1A:-0.352104800195;SOX2:-0.382305863136;UFEwm:-0.386685553933;NR1H4:-0.406142484239;NR6A1:-0.428863387011;KLF4:-0.429061618767;CREB1:-0.437750879902;SPI1:-0.450200973408;TFAP2B:-0.451859658197;SPIB:-0.458968500365;HOX{A4,D4}:-0.475566559241;RFX1:-0.486706388303;SMAD1..7,9:-0.488336803149;RREB1:-0.50306517287;EN1,2:-0.510147739956;ATF5_CREB3:-0.549780232658;ZBTB16:-0.568451579998;NHLH1,2:-0.575551443509;AIRE:-0.576375538875;HIC1:-0.601373116362;HOX{A6,A7,B6,B7}:-0.612184671716;ATF4:-0.614126864757;NFE2L2:-0.62641585045;GTF2I:-0.63545220014;RUNX1..3:-0.642527418458;IRF7:-0.656855050163;PAX3,7:-0.661347626946;PDX1:-0.664038274295;MEF2{A,B,C,D}:-0.67099215698;MYBL2:-0.685022659275;NFE2L1:-0.698834871691;PAX6:-0.719345901066;FOXN1:-0.744296010175;PITX1..3:-0.754934256709;TEF:-0.76510416364;AHR_ARNT_ARNT2:-0.766532024606;FOXO1,3,4:-0.771977383076;RFX2..5_RFXANK_RFXAP:-0.776262734304;NR3C1:-0.779563897049;PRRX1,2:-0.782827858004;RORA:-0.794460263499;NFIX:-0.802554808129;ATF2:-0.813895640041;CUX2:-0.819167090548;ZFP161:-0.83549534737;SRF:-0.838257512255;MED-1{core}:-0.88416616126;MAFB:-0.886234685877;TGIF1:-0.936464227235;MYFfamily:-0.991004582093;ALX1:-1.03082119485;CDX1,2,4:-1.0319028677;FOXA2:-1.0377606119;TOPORS:-1.15845913641;BREu{core}:-1.16865021423;NFATC1..3:-1.16977727615;FOXP1:-1.17754061503;STAT1,3:-1.18387028385;DMAP1_NCOR{1,2}_SMARC:-1.20823548582;SOX5:-1.21420509183;ZNF384:-1.21838292342;TAL1_TCF{3,4,12}:-1.21986003243;ALX4:-1.22985502897;PATZ1:-1.26536824786;EVI1:-1.26858537575;IRF1,2:-1.28107376309;HMGA1,2:-1.28843058813;EGR1..3:-1.37176199256;PAX4:-1.41627897054;NKX3-1:-1.43880637504;GATA4:-1.44163583658;PRDM1:-1.45332593106;XBP1:-1.45860567874;NKX2-1,4:-1.46727105348;MZF1:-1.47194119149;SREBF1,2:-1.49241311685;MTE{core}:-1.51407934818;IKZF2:-1.51418060629;FOXP3:-1.52522123221;ATF6:-1.54311771788;FOX{D1,D2}:-1.55458003967;NKX6-1,2:-1.57021295066;DBP:-1.71033568299;HBP1_HMGB_SSRP1_UBTF:-1.74724130726;BPTF:-1.94121199602;FOXD3:-2.01668583146 | |top_motifs=PPARG:2.51016496887;NR5A1,2:2.47466840946;TP53:2.38509655325;POU2F1..3:2.14712405396;VSX1,2:1.8612811267;TBX4,5:1.68703432619;ZEB1:1.68108265608;SNAI1..3:1.58990274903;NKX2-3_NKX2-5:1.39059873034;ZNF148:1.38111726694;MYOD1:1.19106403608;TBP:1.1775867697;HAND1,2:1.00462749178;IKZF1:0.993720045574;ZNF423:0.975010630055;PAX1,9:0.927019630365;HMX1:0.914078385619;ADNP_IRX_SIX_ZHX:0.900967425156;TFCP2:0.893037459499;XCPE1{core}:0.872466695288;TEAD1:0.785403303583;FOXQ1:0.746927068806;RBPJ:0.693877903939;NANOG:0.683201537444;ARID5B:0.677016004501;STAT5{A,B}:0.675606341898;LEF1_TCF7_TCF7L1,2:0.6592579442;ONECUT1,2:0.635637544563;FOS_FOS{B,L1}_JUN{B,D}:0.631662179641;GLI1..3:0.621382197122;TFAP2{A,C}:0.614757692348;NFIL3:0.613932660619;SP1:0.572612236277;POU3F1..4:0.562020334163;AR:0.559232865313;bHLH_family:0.543106132702;HIF1A:0.534965792076;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.528647494219;ELK1,4_GABP{A,B1}:0.512421752273;BACH2:0.498149792711;REST:0.491729555593;ESR1:0.47213941488;FOXL1:0.457433869968;SOX{8,9,10}:0.451043618235;GFI1:0.430380822944;GTF2A1,2:0.429402963252;EP300:0.422648107757;FOXM1:0.361044356922;TLX1..3_NFIC{dimer}:0.332545337637;LHX3,4:0.318872098934;ZNF143:0.315705946986;FOSL2:0.314080331261;PBX1:0.31085932552;TFAP4:0.29424627313;YY1:0.267812312113;ELF1,2,4:0.244378372586;NKX2-2,8:0.235233295017;E2F1..5:0.233647913985;ZBTB6:0.233594030336;HLF:0.226814168657;MTF1:0.224191632189;ZIC1..3:0.220955577968;EBF1:0.218390773528;GFI1B:0.201249749547;ZNF238:0.197242738401;PAX2:0.178723057953;RXR{A,B,G}:0.170318786875;OCT4_SOX2{dimer}:0.168921803864;SOX17:0.145777700439;NFE2:0.134474878863;NFY{A,B,C}:0.131742729269;LMO2:0.12591668868;HNF4A_NR2F1,2:0.102420843008;TLX2:0.0970228322883;HOX{A5,B5}:0.0951002586735;RXRA_VDR{dimer}:0.0839140556127;GCM1,2:0.0799251775054;GATA6:0.0459128565717;CEBPA,B_DDIT3:0.0440336743595;ESRRA:0.0409552585798;POU1F1:0.0282506404632;GZF1:0.00222988212501;POU6F1:-0.0188424265183;PAX8:-0.0469297401059;NKX3-2:-0.049177206616;FOX{F1,F2,J1}:-0.0540823741088;CRX:-0.0591766730292;NANOG{mouse}:-0.064545267152;NRF1:-0.0683891989532;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0689298612245;CDC5L:-0.0733284066209;POU5F1:-0.0772807401568;NFKB1_REL_RELA:-0.084099557285;HES1:-0.10790652777;MYB:-0.137645395837;HSF1,2:-0.177272967895;ETS1,2:-0.195252377689;TFDP1:-0.201790874687;SPZ1:-0.205151551377;HOXA9_MEIS1:-0.20570490752;T:-0.223042982925;JUN:-0.272292425475;FOX{I1,J2}:-0.275229258338;STAT2,4,6:-0.2837913822;PAX5:-0.295544247744;MAZ:-0.314912866688;HNF1A:-0.352104800195;SOX2:-0.382305863136;UFEwm:-0.386685553933;NR1H4:-0.406142484239;NR6A1:-0.428863387011;KLF4:-0.429061618767;CREB1:-0.437750879902;SPI1:-0.450200973408;TFAP2B:-0.451859658197;SPIB:-0.458968500365;HOX{A4,D4}:-0.475566559241;RFX1:-0.486706388303;SMAD1..7,9:-0.488336803149;RREB1:-0.50306517287;EN1,2:-0.510147739956;ATF5_CREB3:-0.549780232658;ZBTB16:-0.568451579998;NHLH1,2:-0.575551443509;AIRE:-0.576375538875;HIC1:-0.601373116362;HOX{A6,A7,B6,B7}:-0.612184671716;ATF4:-0.614126864757;NFE2L2:-0.62641585045;GTF2I:-0.63545220014;RUNX1..3:-0.642527418458;IRF7:-0.656855050163;PAX3,7:-0.661347626946;PDX1:-0.664038274295;MEF2{A,B,C,D}:-0.67099215698;MYBL2:-0.685022659275;NFE2L1:-0.698834871691;PAX6:-0.719345901066;FOXN1:-0.744296010175;PITX1..3:-0.754934256709;TEF:-0.76510416364;AHR_ARNT_ARNT2:-0.766532024606;FOXO1,3,4:-0.771977383076;RFX2..5_RFXANK_RFXAP:-0.776262734304;NR3C1:-0.779563897049;PRRX1,2:-0.782827858004;RORA:-0.794460263499;NFIX:-0.802554808129;ATF2:-0.813895640041;CUX2:-0.819167090548;ZFP161:-0.83549534737;SRF:-0.838257512255;MED-1{core}:-0.88416616126;MAFB:-0.886234685877;TGIF1:-0.936464227235;MYFfamily:-0.991004582093;ALX1:-1.03082119485;CDX1,2,4:-1.0319028677;FOXA2:-1.0377606119;TOPORS:-1.15845913641;BREu{core}:-1.16865021423;NFATC1..3:-1.16977727615;FOXP1:-1.17754061503;STAT1,3:-1.18387028385;DMAP1_NCOR{1,2}_SMARC:-1.20823548582;SOX5:-1.21420509183;ZNF384:-1.21838292342;TAL1_TCF{3,4,12}:-1.21986003243;ALX4:-1.22985502897;PATZ1:-1.26536824786;EVI1:-1.26858537575;IRF1,2:-1.28107376309;HMGA1,2:-1.28843058813;EGR1..3:-1.37176199256;PAX4:-1.41627897054;NKX3-1:-1.43880637504;GATA4:-1.44163583658;PRDM1:-1.45332593106;XBP1:-1.45860567874;NKX2-1,4:-1.46727105348;MZF1:-1.47194119149;SREBF1,2:-1.49241311685;MTE{core}:-1.51407934818;IKZF2:-1.51418060629;FOXP3:-1.52522123221;ATF6:-1.54311771788;FOX{D1,D2}:-1.55458003967;NKX6-1,2:-1.57021295066;DBP:-1.71033568299;HBP1_HMGB_SSRP1_UBTF:-1.74724130726;BPTF:-1.94121199602;FOXD3:-2.01668583146 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11453-119A4;search_select_hide=table117:FF:11453-119A4 | |||
}} | }} | ||
Latest revision as of 18:02, 4 June 2020
| Name: | Bronchial Epithelial Cell, donor4 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12054 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12054
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12054
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.434 |
| 10 | 10 | 0.77 |
| 100 | 100 | 0.183 |
| 101 | 101 | 0.00547 |
| 102 | 102 | 0.28 |
| 103 | 103 | 0.219 |
| 104 | 104 | 0.575 |
| 105 | 105 | 0.163 |
| 106 | 106 | 0.264 |
| 107 | 107 | 0.344 |
| 108 | 108 | 0.837 |
| 109 | 109 | 1.58616e-4 |
| 11 | 11 | 0.0463 |
| 110 | 110 | 0.0168 |
| 111 | 111 | 0.594 |
| 112 | 112 | 0.63 |
| 113 | 113 | 0.528 |
| 114 | 114 | 0.45 |
| 115 | 115 | 0.333 |
| 116 | 116 | 0.142 |
| 117 | 117 | 0.175 |
| 118 | 118 | 0.688 |
| 119 | 119 | 0.212 |
| 12 | 12 | 0.303 |
| 120 | 120 | 0.06 |
| 121 | 121 | 0.38 |
| 122 | 122 | 0.0166 |
| 123 | 123 | 0.56 |
| 124 | 124 | 0.566 |
| 125 | 125 | 0.676 |
| 126 | 126 | 0.437 |
| 127 | 127 | 0.107 |
| 128 | 128 | 0.983 |
| 129 | 129 | 0.114 |
| 13 | 13 | 0.00426 |
| 130 | 130 | 0.414 |
| 131 | 131 | 0.253 |
| 132 | 132 | 0.602 |
| 133 | 133 | 0.0029 |
| 134 | 134 | 0.191 |
| 135 | 135 | 0.769 |
| 136 | 136 | 0.0956 |
| 137 | 137 | 0.378 |
| 138 | 138 | 0.968 |
| 139 | 139 | 0.718 |
| 14 | 14 | 0.941 |
| 140 | 140 | 0.91 |
| 141 | 141 | 0.966 |
| 142 | 142 | 0.0592 |
| 143 | 143 | 0.923 |
| 144 | 144 | 0.123 |
| 145 | 145 | 0.852 |
| 146 | 146 | 0.0113 |
| 147 | 147 | 0.141 |
| 148 | 148 | 0.618 |
| 149 | 149 | 0.949 |
| 15 | 15 | 0.635 |
| 150 | 150 | 0.539 |
| 151 | 151 | 0.518 |
| 152 | 152 | 0.111 |
| 153 | 153 | 0.597 |
| 154 | 154 | 0.312 |
| 155 | 155 | 0.402 |
| 156 | 156 | 0.276 |
| 157 | 157 | 0.731 |
| 158 | 158 | 0.316 |
| 159 | 159 | 0.795 |
| 16 | 16 | 0.153 |
| 160 | 160 | 0.0854 |
| 161 | 161 | 0.0894 |
| 162 | 162 | 0.625 |
| 163 | 163 | 0.481 |
| 164 | 164 | 0.467 |
| 165 | 165 | 0.647 |
| 166 | 166 | 0.57 |
| 167 | 167 | 0.719 |
| 168 | 168 | 0.518 |
| 169 | 169 | 0.0716 |
| 17 | 17 | 0.112 |
| 18 | 18 | 0.525 |
| 19 | 19 | 0.806 |
| 2 | 2 | 0.126 |
| 20 | 20 | 0.971 |
| 21 | 21 | 0.973 |
| 22 | 22 | 0.157 |
| 23 | 23 | 0.973 |
| 24 | 24 | 0.0398 |
| 25 | 25 | 0.623 |
| 26 | 26 | 0.0721 |
| 27 | 27 | 0.224 |
| 28 | 28 | 0.849 |
| 29 | 29 | 0.223 |
| 3 | 3 | 0.618 |
| 30 | 30 | 0.12 |
| 31 | 31 | 0.644 |
| 32 | 32 | 0.968 |
| 33 | 33 | 0.142 |
| 34 | 34 | 0.772 |
| 35 | 35 | 0.502 |
| 36 | 36 | 0.0794 |
| 37 | 37 | 0.248 |
| 38 | 38 | 0.132 |
| 39 | 39 | 0.604 |
| 4 | 4 | 0.593 |
| 40 | 40 | 0.00154 |
| 41 | 41 | 0.669 |
| 42 | 42 | 0.624 |
| 43 | 43 | 0.666 |
| 44 | 44 | 0.673 |
| 45 | 45 | 0.21 |
| 46 | 46 | 0.391 |
| 47 | 47 | 0.149 |
| 48 | 48 | 0.042 |
| 49 | 49 | 0.955 |
| 5 | 5 | 0.577 |
| 50 | 50 | 0.506 |
| 51 | 51 | 0.808 |
| 52 | 52 | 0.431 |
| 53 | 53 | 0.587 |
| 54 | 54 | 0.893 |
| 55 | 55 | 0.523 |
| 56 | 56 | 0.364 |
| 57 | 57 | 0.369 |
| 58 | 58 | 0.784 |
| 59 | 59 | 0.0539 |
| 6 | 6 | 0.231 |
| 60 | 60 | 0.228 |
| 61 | 61 | 0.489 |
| 62 | 62 | 0.899 |
| 63 | 63 | 0.279 |
| 64 | 64 | 0.166 |
| 65 | 65 | 0.326 |
| 66 | 66 | 0.206 |
| 67 | 67 | 0.965 |
| 68 | 68 | 0.911 |
| 69 | 69 | 0.337 |
| 7 | 7 | 0.203 |
| 70 | 70 | 0.0684 |
| 71 | 71 | 0.1 |
| 72 | 72 | 0.951 |
| 73 | 73 | 0.0402 |
| 74 | 74 | 0.041 |
| 75 | 75 | 0.206 |
| 76 | 76 | 0.719 |
| 77 | 77 | 0.0293 |
| 78 | 78 | 0.0594 |
| 79 | 79 | 0.467 |
| 8 | 8 | 0.141 |
| 80 | 80 | 0.729 |
| 81 | 81 | 0.965 |
| 82 | 82 | 0.774 |
| 83 | 83 | 0.993 |
| 84 | 84 | 0.732 |
| 85 | 85 | 0.899 |
| 86 | 86 | 0.919 |
| 87 | 87 | 0.00712 |
| 88 | 88 | 0.774 |
| 89 | 89 | 0.0607 |
| 9 | 9 | 0.642 |
| 90 | 90 | 0.00702 |
| 91 | 91 | 0.694 |
| 92 | 92 | 0.81 |
| 93 | 93 | 0.831 |
| 94 | 94 | 0.835 |
| 95 | 95 | 0.00644 |
| 96 | 96 | 0.654 |
| 97 | 97 | 0.712 |
| 98 | 98 | 0.205 |
| 99 | 99 | 0.0543 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12054
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0002328 (bronchial epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000485 (simple columnar epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0004815 (lower respiratory tract epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002031 (epithelium of bronchus)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000015 (human bronchial epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
