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{{f5samples
{{f5samples
|id=FF:11515-119H3
|DRA_sample_Accession=CAGE@SAMD00005391
|name=Renal Proximal Tubular Epithelial Cell, donor1
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005391
|sample_id=11515
|accession_numbers=CAGE;DRX008437;DRR009309;DRZ000734;DRZ002119;DRZ012084;DRZ013469
|rna_tube_id=119H3
|accession_numbers_RNASeq=sRNA-Seq;DRX037239;DRR041605;DRZ007247
|rna_box=119
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|rna_position=H3
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=lot:5127
|rna_catalog_number=SC4105
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=kidney
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.7
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=epithelial cell of kidney, proximal tubule
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1.21
|sample_note=
|profile_hcage=CNhs11330,LSID768,release014,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10014,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000075,CL:0000144,CL:0000220,CL:0000222,CL:0000239,CL:0000255,CL:0000548,CL:0002078,CL:0002306,CL:0002321,CL:0002371,CL:0002518,CL:0002584,CL:1000494,CL:1000497,CL:1000507,CL:1000615
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000058,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000080,UBERON:0000083,UBERON:0000119,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000489,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001008,UBERON:0001062,UBERON:0001225,UBERON:0001231,UBERON:0001285,UBERON:0001851,UBERON:0002050,UBERON:0002100,UBERON:0002113,UBERON:0002120,UBERON:0002417,UBERON:0002532,UBERON:0002553,UBERON:0003060,UBERON:0003064,UBERON:0003074,UBERON:0003081,UBERON:0003103,UBERON:0003104,UBERON:0003220,UBERON:0003886,UBERON:0003887,UBERON:0003914,UBERON:0003918,UBERON:0004111,UBERON:0004120,UBERON:0004134,UBERON:0004211,UBERON:0004810,UBERON:0004819,UBERON:0004875,UBERON:0004876,UBERON:0005095,UBERON:0005103,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005291,UBERON:0005423,UBERON:0005721,UBERON:0005754,UBERON:0006553,UBERON:0006554,UBERON:0006555,UBERON:0006853,UBERON:0007684,UBERON:0007685,UBERON:0007687,UBERON:0009142,UBERON:0009201
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151,FF:0000155
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.07!117.24!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.93!84.87!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!1.89!76.46!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.88!75.44!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.61!44.09!IRF6;;chr6:50786591..50786614,+!p1@TFAP2B!1.55!34.66!TFAP2B;;chr17:46622205..46622218,-!p3@HOXB2!1.50!34.92!HOXB2;;chr17:46703687..46703740,-!p1@HOXB9!1.50!30.33!HOXB9;;chr6:34204921..34204939,+!p3@HMGA1!1.41!708.05!HMGA1;;chr17:46682321..46682362,-!p1@HOXB6!1.40!23.96!HOXB6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.38!23.19!TFCP2L1;;chr17:46675558..46675577,-!p2@HOXB6!1.38!22.94!HOXB6;;chr7:27205136..27205164,-!p1@HOXA9!1.37!22.68!HOXA9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.32!19.88!POU3F3;;chr21:38071430..38071456,+!p1@SIM2!1.29!18.35!SIM2;;chr6:10415276..10415341,-!p2@TFAP2A!1.27!21.66!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!1.26!17.08!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.22!15.55!ZBED2;;chr17:46622440..46622477,-!p5@HOXB2!1.18!15.80!HOXB2;;chr5:2751762..2751784,-!p1@IRX2!1.17!13.76!IRX2;;chr2:176994408..176994492,+!p1@HOXD8!1.17!13.76!HOXD8;;chr7:27205106..27205134,-!p2@HOXA9!1.16!13.51!HOXA9;;chr2:177053386..177053402,+!p1@HOXD1!1.14!12.74!HOXD1;;chr6:34204672..34204692,+!p1@HMGA1!1.06!1171.16!HMGA1;;chr2:46524897..46524911,+!p2@EPAS1!1.02!27.02!EPAS1;;chr17:46687959..46688007,-!p2@HOXB7!1.02!13.25!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!1.01!9.18!HOXB8;;chr20:42295745..42295765,+!p1@MYBL2!0.99!146.04!MYBL2;;chr17:46622229..46622257,-!p6@HOXB2!0.98!10.20!HOXB2;;chr17:46622070..46622109,-!p1@HOXB2!0.96!18.35!HOXB2;;chr17:46667594..46667619,-!p1@HOXB3!0.96!8.16!HOXB3;;chr1:24645832..24645853,+!p1@GRHL3!0.96!8.16!GRHL3;;chr7:27153454..27153469,-!p2@HOXA3!0.95!7.90!HOXA3;;chr17:46688334..46688385,-!p1@HOXB7!0.94!11.21!HOXB7;;chr17:46675420..46675465,-!p3@HOXB6!0.94!8.92!HOXB6;;chr17:7493405..7493419,-!p1@SOX15!0.94!7.65!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!0.94!7.65!TFAP2A;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.11!DRAP1;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.41!BNC1;;chr10:8096631..8096660,+!p1@GATA3!0.91!8.67!GATA3;;chr6:1312325..1312340,+!p1@FOXQ1!0.90!11.72!FOXQ1;;chr20:42295713..42295738,+!p2@MYBL2!0.89!42.05!MYBL2;;chr11:65667846..65667868,-!p1@FOSL1!0.87!180.96!FOSL1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.87!6.37!POU3F3;;chr17:41623692..41623715,-!p1@ETV4!0.85!27.78!ETV4;;chr17:46703826..46703845,-!p3@HOXB9!0.85!6.12!HOXB9;;chr7:27219849..27219867,-!p6@HOXA10!0.85!6.12!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!0.84!5.86!HOXA11;;chr12:54380404..54380433,+!p3@HOXC10!0.84!5.86!HOXC10;;chr17:46703528..46703549,-!p5@HOXB9!0.84!5.86!HOXB9;;chr17:46675539..46675551,-!p7@HOXB6!0.82!5.61!HOXB6;;chr6:50789717..50789729,+!p4@TFAP2B!0.82!5.61!TFAP2B;;chr12:54393880..54393962,+!p1@HOXC9!0.82!5.61!HOXC9;;chr11:65686802..65686818,+!p6@DRAP1!0.81!9.94!DRAP1;;chr10:119303078..119303169,+!p2@EMX2!0.80!5.35!EMX2;;chr1:209979411..209979433,-!p2@IRF6!0.80!5.35!IRF6;;chr7:27192185..27192209,-!p1@HOXA3!0.80!5.35!HOXA3;;chr7:27196217..27196246,-!p2@HOXA7!0.80!5.35!HOXA7;;chr20:31350184..31350200,+!p1@DNMT3B!0.79!11.47!DNMT3B;;chr10:102505493..102505546,+!p2@PAX2!0.79!5.10!PAX2;;chr17:36105074..36105086,-!p2@HNF1B!0.79!5.10!HNF1B;;chr12:66218255..66218304,+!p3@HMGA2!0.78!14.53!HMGA2;;chr12:3069037..3069119,+!p2@TEAD4!0.77!18.35!TEAD4;;chr3:69915385..69915438,+!p3@MITF!0.77!4.84!MITF;;chr7:27224842..27224872,-!p1@HOXA11!0.77!4.84!HOXA11;;chr7:28448965..28448994,+!p2@CREB5!0.76!18.35!CREB5;;chr17:70117153..70117174,+!p1@SOX9!0.75!53.27!SOX9;;chr11:61520075..61520136,+!p1@C11orf9!0.75!10.45!C11orf9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.75!4.59!HOXC5;;chr17:46675619..46675642,-!p5@HOXB6!0.75!4.59!HOXB6;;chr17:46692624..46692659,-!p3@HOXB8!0.75!4.59!HOXB8;;chr1:6479968..6479986,-!p1@HES2!0.75!4.59!HES2;;chr3:69811858..69811881,+!p5@MITF!0.75!4.59!MITF;;chr2:46524878..46524891,+!p3@EPAS1!0.74!8.41!EPAS1;;chr2:177016336..177016350,+!p1@HOXD4!0.73!4.33!HOXD4;;chr3:69811882..69811898,+!p6@MITF!0.73!4.33!MITF;;chr17:46675586..46675600,-!p6@HOXB6!0.73!4.33!HOXB6;;chr13:73633131..73633149,+!p1@KLF5!0.72!51.23!KLF5;;chr11:65668011..65668020,-!p3@FOSL1!0.71!4.08!FOSL1;;chr17:35294075..35294102,+!p1@ENST00000559335!0.71!4.08!LHX1;;chr17:45928443..45928473,-!p2@SP6!0.71!4.08!SP6;;chr17:46622175..46622186,-!p12@HOXB2!0.71!4.08!HOXB2;;chr17:46692457..46692484,-!p2@HOXB8!0.71!4.08!HOXB8;;chr7:27219833..27219845,-!p7@HOXA10!0.71!4.08!HOXA10;;chr17:46621101..46621143,-!p7@HOXB2!0.70!5.61!HOXB2;;chr6:31126291..31126399,+!p1@TCF19!0.69!41.80!TCF19;;chr17:46655704..46655718,-!p2@HOXB4!0.69!6.12!HOXB4;;chr12:66218003..66218018,+!p9@HMGA2!0.69!4.84!HMGA2;;chr7:26191809..26191890,+!p1@NFE2L3!0.67!20.90!NFE2L3;;chr12:66218598..66218645,+!p2@HMGA2!0.67!19.12!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!0.67!6.63!TFAP2A;;chr10:8100691..8100732,+!p5@GATA3!0.66!3.57!GATA3;;chr16:51185318..51185348,-!p2@SALL1!0.66!3.57!SALL1;;chr17:46667628..46667642,-!p2@HOXB3!0.66!3.57!HOXB3;;chr21:38071403..38071428,+!p2@SIM2!0.66!3.57!SIM2;;chr6:21593973..21593988,+!p1@SOX4!0.64!142.48!SOX4;;chr6:21597765..21597779,+!p2@SOX4!0.63!31.35!SOX4;;chr12:7079780..7079791,-!p2@PHB2!0.63!19.88!PHB2;;chr7:27169801..27169844,-!p2@HOXA4!0.63!3.31!HOXA4;;chr7:97840743..97840786,+!p1@BHLHA15!0.63!3.31!BHLHA15;;chr8:102504651..102504683,+!p1@GRHL2!0.63!3.31!GRHL2;;chr2:176987441..176987454,+!p1@HOXD9!0.63!3.31!HOXD9;;chr2:96012397..96012417,+!p3@KCNIP3!0.63!3.31!KCNIP3;;chr3:111314230..111314241,-!p2@ZBED2!0.63!3.31!ZBED2;;chr19:53496768..53496799,-!p1@ZNF702P!0.62!5.35!ZNF702P;;chr17:41623009..41623053,-!p4@ETV4!0.61!5.35!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.61!5.10!HOXB2;;chr12:66218212..66218244,+!p5@HMGA2!0.61!4.84!HMGA2;;chr11:65554528..65554546,+!p1@OVOL1!0.61!3.06!OVOL1;;chr16:51185172..51185197,-!p1@SALL1!0.61!3.06!SALL1;;chr17:46675469..46675481,-!p4@HOXB6!0.61!3.06!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.06!HOXB7;;chr17:46692318..46692362,-!p5@HOXB8!0.61!3.06!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.61!3.06!HOXB9;;chr2:176972000..176972025,+!p4@HOXD11!0.61!3.06!HOXD11;;chr2:96012353..96012378,+!p4@KCNIP3!0.61!3.06!KCNIP3;;chr4:299227..299272,-!p1@ZNF732!0.61!3.06!ZNF732;;chr6:1612300..1612324,+!p3@FOXC1!0.61!3.06!FOXC1;;chr7:27196267..27196311,-!p1@HOXA7!0.61!3.06!HOXA7;;chr1:24646002..24646013,+!p3@GRHL3!0.61!3.06!GRHL3;;chr10:104155480..104155534,+!p2@NFKB2!0.60!23.19!NFKB2;;chr17:41622925..41622976,-!p3@ETV4!0.60!4.84!ETV4;;chr12:66218836..66218888,+!p1@HMGA2!0.59!32.62!HMGA2;;chr20:50159198..50159299,-!p1@NFATC2!0.59!4.59!NFATC2;;chr11:65686776..65686787,+!p9@DRAP1!0.59!3.57!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.58!13.00!FOSL1;;chr10:119302232..119302265,+!p1@EMX2!0.58!2.80!EMX2;;chr12:54378923..54378966,+!p1@HOXC10!0.58!2.80!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.58!2.80!HOXC9;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.58!2.80!POU3F3;;chr3:141043050..141043063,+!p22@ZBTB38!0.58!2.80!ZBTB38;;chr5:3595977..3595999,+!p1@IRX1!0.58!2.80!IRX1;;chr6:34210478..34210481,+!p8@HMGA1!0.58!2.80!HMGA1;;chr7:27190547..27190591,-!p1@HOXA6!0.58!2.80!HOXA6;;chr7:27213893..27213954,-!p1@HOXA10!0.58!2.80!HOXA10;;chr15:67357924..67357952,+!p2@SMAD3!0.57!21.92!SMAD3;;chr1:8938736..8938756,-!p1@ENO1!0.56!3624.34!ENO1;;chr1:8938766..8938774,-!p2@ENO1!0.56!225.31!ENO1;;chr18:3450161..3450183,+!p1@TGIF1!0.56!111.38!TGIF1;;chr12:2986275..2986363,-!p1@FOXM1!0.56!32.62!FOXM1;;chr15:96869255..96869291,+!p6@NR2F2!0.56!5.35!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.56!4.59!ZFP64;;chr22:21355896..21355920,-!p4@THAP7!0.56!3.06!THAP7;;chr10:104154246..104154347,+!p3@NFKB2!0.55!19.12!NFKB2;;chr17:46621937..46621966,-!p2@HOXB2!0.55!8.16!HOXB2;;chr11:64764435..64764449,-!p1@BATF2!0.55!3.82!BATF2;;chr12:54447599..54447630,+!p3@HOXC4!0.55!3.31!HOXC4;;chr12:54402745..54402788,+!p1@HOXC8!0.55!2.55!HOXC8;;chr16:51185573..51185593,-!p3@SALL1!0.55!2.55!SALL1;;chr17:46691732..46691766,-!p4@HOXB8!0.55!2.55!HOXB8;;chr17:46692603..46692621,-!p6@HOXB8!0.55!2.55!HOXB8;;chr5:3595934..3595957,+!p2@IRX1!0.55!2.55!IRX1;;chr3:141043020..141043049,+!p17@ZBTB38!0.55!2.55!ZBTB38;;chr1:8938709..8938720,-!p3@ENO1!0.54!152.16!ENO1;;chr17:7492684..7492778,-!p2@SOX15!0.53!5.86!SOX15;;chr15:96869114..96869160,+!p11@NR2F2!0.53!3.57!NR2F2;;chr6:44233252..44233296,-!p1@NFKBIE!0.52!29.06!NFKBIE;;chr22:42229210..42229229,+!p3@SREBF2!0.52!6.37!SREBF2;;chr6:1610293..1610310,+!p1@FOXC1!0.52!4.33!FOXC1;;chr17:53342311..53342400,+!p1@HLF!0.52!2.80!HLF;;chr16:52581025..52581072,-!p1@TOX3!0.52!2.29!TOX3;;chr17:46621146..46621180,-!p10@HOXB2!0.52!2.29!HOXB2;;chr6:100912785..100912822,-!p1@SIM1!0.52!2.29!SIM1;;chr6:134210243..134210257,+!p1@TCF21!0.52!2.29!TCF21;;chr9:100615499..100615519,+!p1@FOXE1!0.52!2.29!FOXE1;;chr10:119302645..119302712,+!p3@EMX2!0.52!2.29!EMX2;;chr11:65554563..65554576,+!p2@OVOL1!0.52!2.29!OVOL1;;chr1:10856694..10856715,-!p3@CASZ1!0.52!2.29!CASZ1;;chr2:176987463..176987479,+!p2@HOXD9!0.52!2.29!HOXD9;;chr2:176994919..176994931,+!p2@HOXD8!0.52!2.29!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.52!2.29!HOXD3;;chr2:95963052..95963106,+!p1@KCNIP3!0.52!2.29!KCNIP3;;chr9:117160738..117160782,-!p2@AKNA!0.51!11.47!AKNA;;chr3:12329358..12329393,+!p3@PPARG!0.51!6.63!PPARG;;chr3:24536253..24536328,-!p1@THRB!0.51!4.84!THRB;;chr17:41622765..41622821,-!p2@ETV4!0.51!3.82!ETV4;;chr10:8096772..8096787,+!p2@GATA3!0.51!2.80!GATA3;;chr19:45908292..45908374,-!p1@PPP1R13L!0.50!24.98!PPP1R13L;;chr17:47492252..47492265,-!p2@PHB!0.50!11.21!PHB;;chr19:20188776..20188826,+!p1@ZNF90!0.50!7.14!ZNF90;;chr16:8962544..8962584,-!p2@CARHSP1!0.50!5.86!CARHSP1;;chr16:54320675..54320715,-!p1@IRX3!0.50!5.61!IRX3;;chr6:10412392..10412409,-!p4@TFAP2A!0.50!2.55!TFAP2A;;chr6:34204973..34204990,+!p4@HMGA1!0.49!37.47!HMGA1;;chr22:42229246..42229270,+!p2@SREBF2!0.49!34.92!SREBF2;;chr2:239148671..239148686,-!p1@HES6!0.49!9.69!HES6;;chr1:89264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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000615;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
|ffid_belonging_in_development=CL:0000222
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|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
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|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.nobarcode.rdna.fa.gz
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|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg38.nobarcode.ctss.bed.gz
|id=FF:11515-119H3
|is_a=EFO:0002091;;FF:0000155
|is_obsolete=
|library_id=CNhs11330
|library_id_phase_based=2:CNhs11330
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11515
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CCGTCC.11515
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11515
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CCGTCC.11515
|name=Renal Proximal Tubular Epithelial Cell, donor1
|namespace=FANTOM5
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|profile_hcage=CNhs11330,LSID768,release014,COMPLETED
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|rna_box=119
|rna_catalog_number=SC4105
|rna_concentration=1.21
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=lot:5127
|rna_od260/230=
|rna_od260/280=
|rna_position=H3
|rna_rin=9.7
|rna_sample_type=total RNA
|rna_tube_id=119H3
|rna_weight_ug=10
|rnaseq_library_id=SRhi10014.CCGTCC
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=epithelial cell of kidney, proximal tubule
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.32045524187992e-226!GO:0005737;cytoplasm;1.27525368106865e-208!GO:0043226;organelle;9.48651829599915e-179!GO:0043229;intracellular organelle;1.59234522339778e-178!GO:0043231;intracellular membrane-bound organelle;1.22264491904146e-172!GO:0043227;membrane-bound organelle;3.03233886234083e-172!GO:0044444;cytoplasmic part;2.50591093575398e-147!GO:0044422;organelle part;3.11125269828764e-147!GO:0044446;intracellular organelle part;4.99363836660576e-146!GO:0032991;macromolecular complex;1.00646958001543e-90!GO:0005739;mitochondrion;2.58903970090268e-83!GO:0030529;ribonucleoprotein complex;3.68803373520322e-82!GO:0044237;cellular metabolic process;3.37082191203111e-78!GO:0044238;primary metabolic process;9.35329053467232e-78!GO:0005515;protein binding;8.18154798089269e-72!GO:0043170;macromolecule metabolic process;7.15075499091629e-66!GO:0043233;organelle lumen;1.00519912190136e-64!GO:0031974;membrane-enclosed lumen;1.00519912190136e-64!GO:0044428;nuclear part;3.1900081295488e-61!GO:0003723;RNA binding;5.44096206087709e-59!GO:0031090;organelle membrane;1.3485064343739e-58!GO:0005840;ribosome;4.22228816478758e-55!GO:0044429;mitochondrial part;4.56315887239669e-55!GO:0009058;biosynthetic process;2.94687558241773e-53!GO:0019538;protein metabolic process;6.56573292441694e-53!GO:0006412;translation;7.84678030245389e-53!GO:0005634;nucleus;1.37134060156304e-52!GO:0031967;organelle envelope;7.29000000140563e-49!GO:0031975;envelope;2.11753113182804e-48!GO:0044249;cellular biosynthetic process;3.86879825620244e-48!GO:0003735;structural constituent of ribosome;5.28502133313516e-48!GO:0044260;cellular macromolecule metabolic process;9.26962669506683e-47!GO:0016043;cellular component organization and biogenesis;1.0231607771225e-46!GO:0044267;cellular protein metabolic process;1.78164170597303e-46!GO:0043234;protein complex;3.37707713126557e-45!GO:0009059;macromolecule biosynthetic process;3.95121405453254e-43!GO:0033036;macromolecule localization;1.22125564068228e-41!GO:0015031;protein transport;1.39399807087152e-41!GO:0033279;ribosomal subunit;6.64371369258441e-41!GO:0008104;protein localization;3.42204701314359e-39!GO:0006396;RNA processing;5.01335632877582e-39!GO:0045184;establishment of protein localization;2.03656767340331e-38!GO:0043228;non-membrane-bound organelle;7.38017054699516e-38!GO:0043232;intracellular non-membrane-bound organelle;7.38017054699516e-38!GO:0005829;cytosol;8.32346407960543e-38!GO:0005740;mitochondrial envelope;2.39651365747203e-36!GO:0046907;intracellular transport;5.23871280582005e-35!GO:0006996;organelle organization and biogenesis;6.28993068213119e-35!GO:0031981;nuclear lumen;2.61291506237015e-34!GO:0031966;mitochondrial membrane;5.83942169882126e-34!GO:0019866;organelle inner membrane;2.11975631184376e-32!GO:0043283;biopolymer metabolic process;4.19257104959608e-31!GO:0005743;mitochondrial inner membrane;4.71246258745875e-31!GO:0065003;macromolecular complex assembly;6.08998680064883e-31!GO:0016071;mRNA metabolic process;1.19127250621991e-29!GO:0006886;intracellular protein transport;4.58896711384081e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.50627216464939e-28!GO:0008380;RNA splicing;8.24136693889652e-28!GO:0022607;cellular component assembly;9.06502976674386e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.66635348840497e-26!GO:0006397;mRNA processing;2.8670668973365e-25!GO:0012505;endomembrane system;2.3204927384397e-24!GO:0006259;DNA metabolic process;1.47606767182813e-23!GO:0010467;gene expression;2.55328978913643e-23!GO:0044445;cytosolic part;4.36282162649902e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.63118469981082e-23!GO:0031980;mitochondrial lumen;6.34510759744743e-23!GO:0005759;mitochondrial matrix;6.34510759744743e-23!GO:0051649;establishment of cellular localization;8.35792662708467e-23!GO:0051641;cellular localization;8.35792662708467e-23!GO:0007049;cell cycle;2.98005037456741e-22!GO:0015934;large ribosomal subunit;4.17718129422068e-21!GO:0005681;spliceosome;5.91812965911074e-21!GO:0006119;oxidative phosphorylation;7.19221385976689e-21!GO:0000166;nucleotide binding;8.36081823706348e-21!GO:0015935;small ribosomal subunit;9.78960226587185e-21!GO:0005783;endoplasmic reticulum;3.31283882341606e-20!GO:0044455;mitochondrial membrane part;1.87295705073708e-19!GO:0051186;cofactor metabolic process;2.76469528809477e-19!GO:0048770;pigment granule;6.19306181510859e-19!GO:0042470;melanosome;6.19306181510859e-19!GO:0005654;nucleoplasm;1.52426290121765e-18!GO:0016462;pyrophosphatase activity;3.48243089979734e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.42788774598269e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;6.27104698321771e-18!GO:0016874;ligase activity;8.59457079468561e-18!GO:0005730;nucleolus;1.23260521914824e-17!GO:0044265;cellular macromolecule catabolic process;1.261713569841e-17!GO:0006457;protein folding;1.3728285425042e-17!GO:0000278;mitotic cell cycle;1.47890685179493e-17!GO:0017111;nucleoside-triphosphatase activity;1.8194109732827e-17!GO:0044432;endoplasmic reticulum part;2.02040266781563e-17!GO:0022402;cell cycle process;1.05109232096496e-16!GO:0005761;mitochondrial ribosome;1.10279781797201e-16!GO:0000313;organellar ribosome;1.10279781797201e-16!GO:0044248;cellular catabolic process;3.90861761493018e-16!GO:0005794;Golgi apparatus;4.73572922367968e-16!GO:0032553;ribonucleotide binding;1.19890304014504e-15!GO:0032555;purine ribonucleotide binding;1.19890304014504e-15!GO:0005746;mitochondrial respiratory chain;1.25422613326356e-15!GO:0009057;macromolecule catabolic process;1.90990613083256e-15!GO:0012501;programmed cell death;2.00296475571038e-15!GO:0017076;purine nucleotide binding;2.97288292507586e-15!GO:0006915;apoptosis;3.31976367539257e-15!GO:0043285;biopolymer catabolic process;3.33276585187906e-15!GO:0006732;coenzyme metabolic process;3.51891214248576e-15!GO:0022618;protein-RNA complex assembly;4.47705485630412e-15!GO:0043412;biopolymer modification;4.91472742744644e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;6.13955422500246e-15!GO:0000502;proteasome complex (sensu Eukaryota);6.17957891805457e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.19208762991796e-15!GO:0006605;protein targeting;7.34700612088434e-15!GO:0044451;nucleoplasm part;7.77281951823779e-15!GO:0019941;modification-dependent protein catabolic process;9.58577931378738e-15!GO:0043632;modification-dependent macromolecule catabolic process;9.58577931378738e-15!GO:0044257;cellular protein catabolic process;1.84818178777297e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.88135649135914e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.24381125322804e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.68232451226157e-14!GO:0003954;NADH dehydrogenase activity;2.68232451226157e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.68232451226157e-14!GO:0008219;cell death;5.10762391581122e-14!GO:0016265;death;5.10762391581122e-14!GO:0008134;transcription factor binding;5.13350596280568e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.5848204611016e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.13060887363363e-14!GO:0006512;ubiquitin cycle;8.74268342565138e-14!GO:0005789;endoplasmic reticulum membrane;1.12834487890228e-13!GO:0006464;protein modification process;1.16532081400077e-13!GO:0005635;nuclear envelope;1.19903449977799e-13!GO:0005524;ATP binding;3.78938429809084e-13!GO:0051082;unfolded protein binding;3.8418368910841e-13!GO:0000087;M phase of mitotic cell cycle;4.42716994321003e-13!GO:0007067;mitosis;4.68200388606969e-13!GO:0022403;cell cycle phase;5.00729018749773e-13!GO:0032559;adenyl ribonucleotide binding;5.13383562334274e-13!GO:0006974;response to DNA damage stimulus;7.31789188420092e-13!GO:0030163;protein catabolic process;9.16380120064769e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.3441322648869e-12!GO:0042773;ATP synthesis coupled electron transport;1.3441322648869e-12!GO:0009055;electron carrier activity;1.72543245226913e-12!GO:0030554;adenyl nucleotide binding;1.74761881176412e-12!GO:0005694;chromosome;1.8087919900125e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.82858677027491e-12!GO:0044427;chromosomal part;1.95283518121851e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.08495792643812e-12!GO:0045271;respiratory chain complex I;2.08495792643812e-12!GO:0005747;mitochondrial respiratory chain complex I;2.08495792643812e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.62164554750596e-12!GO:0042254;ribosome biogenesis and assembly;7.77893847743841e-12!GO:0031965;nuclear membrane;1.45774262781771e-11!GO:0008135;translation factor activity, nucleic acid binding;1.81701053932555e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.81701053932555e-11!GO:0000375;RNA splicing, via transesterification reactions;1.81701053932555e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.81701053932555e-11!GO:0009259;ribonucleotide metabolic process;2.12154840053074e-11!GO:0006399;tRNA metabolic process;2.12158478295806e-11!GO:0042981;regulation of apoptosis;2.84730129315087e-11!GO:0043067;regulation of programmed cell death;3.16910482810649e-11!GO:0048193;Golgi vesicle transport;3.80208697978144e-11!GO:0016740;transferase activity;6.38544868911434e-11!GO:0016192;vesicle-mediated transport;7.75746097171549e-11!GO:0006163;purine nucleotide metabolic process;8.24218785252622e-11!GO:0043687;post-translational protein modification;1.32935184514419e-10!GO:0000279;M phase;1.67683228586311e-10!GO:0007005;mitochondrion organization and biogenesis;1.76577776237624e-10!GO:0051301;cell division;2.20716944117993e-10!GO:0009056;catabolic process;2.21035548318261e-10!GO:0009150;purine ribonucleotide metabolic process;2.33352209405942e-10!GO:0051276;chromosome organization and biogenesis;2.57806174533171e-10!GO:0051188;cofactor biosynthetic process;2.79094580133298e-10!GO:0006281;DNA repair;3.14037042317481e-10!GO:0006260;DNA replication;3.65171188013443e-10!GO:0044453;nuclear membrane part;4.09427243860219e-10!GO:0009260;ribonucleotide biosynthetic process;4.51285444144091e-10!GO:0006461;protein complex assembly;4.67375945716572e-10!GO:0009719;response to endogenous stimulus;5.59160433621212e-10!GO:0006913;nucleocytoplasmic transport;6.0936561623628e-10!GO:0006164;purine nucleotide biosynthetic process;6.15494390956886e-10!GO:0006413;translational initiation;7.85261011586529e-10!GO:0051169;nuclear transport;1.40153388289401e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.5880671691767e-09!GO:0006446;regulation of translational initiation;1.62418241859395e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.7067637369674e-09!GO:0000785;chromatin;1.95244134723738e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.0252599250227e-09!GO:0009141;nucleoside triphosphate metabolic process;2.10348751992977e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.10348751992977e-09!GO:0005768;endosome;3.26636022350902e-09!GO:0003743;translation initiation factor activity;4.34341723389311e-09!GO:0042623;ATPase activity, coupled;4.34341723389311e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.44691722940313e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.44691722940313e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.44691722940313e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.44691722940313e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.44691722940313e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.65450094777166e-09!GO:0051726;regulation of cell cycle;5.42708847464912e-09!GO:0000074;regulation of progression through cell cycle;6.10485161085435e-09!GO:0065002;intracellular protein transport across a membrane;6.71753398389213e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.41885467635029e-09!GO:0003712;transcription cofactor activity;7.55324853045754e-09!GO:0005793;ER-Golgi intermediate compartment;7.62162349999285e-09!GO:0006323;DNA packaging;7.94190004297788e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.30071434608289e-09!GO:0043038;amino acid activation;9.41700703261837e-09!GO:0006418;tRNA aminoacylation for protein translation;9.41700703261837e-09!GO:0043039;tRNA aminoacylation;9.41700703261837e-09!GO:0005643;nuclear pore;1.02600066513705e-08!GO:0008639;small protein conjugating enzyme activity;1.03700170468627e-08!GO:0065004;protein-DNA complex assembly;1.26212406382812e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.31712503529232e-08!GO:0009060;aerobic respiration;1.68502403835296e-08!GO:0016887;ATPase activity;1.9308594553144e-08!GO:0004842;ubiquitin-protein ligase activity;2.02605209545006e-08!GO:0003676;nucleic acid binding;2.23762975304242e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.25330238002388e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.25330238002388e-08!GO:0017038;protein import;2.59221132968899e-08!GO:0019787;small conjugating protein ligase activity;3.36303572788591e-08!GO:0009108;coenzyme biosynthetic process;3.39970862552715e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.0149508832702e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.0149508832702e-08!GO:0043069;negative regulation of programmed cell death;5.06195923672264e-08!GO:0045333;cellular respiration;5.35081924954152e-08!GO:0006333;chromatin assembly or disassembly;6.13672739307252e-08!GO:0006364;rRNA processing;6.3114002447055e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.55993430070895e-08!GO:0009117;nucleotide metabolic process;6.86221240915729e-08!GO:0015986;ATP synthesis coupled proton transport;7.15977115800024e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.15977115800024e-08!GO:0051246;regulation of protein metabolic process;7.85773317847966e-08!GO:0006334;nucleosome assembly;8.84742447004637e-08!GO:0048523;negative regulation of cellular process;8.84925999630125e-08!GO:0016787;hydrolase activity;9.88593538288636e-08!GO:0016604;nuclear body;9.88967680978133e-08!GO:0043066;negative regulation of apoptosis;1.02033056731027e-07!GO:0016491;oxidoreductase activity;1.06394700307308e-07!GO:0016072;rRNA metabolic process;1.08336635621556e-07!GO:0046034;ATP metabolic process;1.12778775256662e-07!GO:0016881;acid-amino acid ligase activity;1.22892638435004e-07!GO:0019829;cation-transporting ATPase activity;1.40054101732407e-07!GO:0003924;GTPase activity;1.77108028804788e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.77897257031481e-07!GO:0008565;protein transporter activity;1.86050254539261e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.69261783874224e-07!GO:0031497;chromatin assembly;2.69261783874224e-07!GO:0030120;vesicle coat;2.95404914468371e-07!GO:0030662;coated vesicle membrane;2.95404914468371e-07!GO:0008654;phospholipid biosynthetic process;2.98882138024022e-07!GO:0006916;anti-apoptosis;3.21555091479397e-07!GO:0015630;microtubule cytoskeleton;3.24101259576157e-07!GO:0048475;coated membrane;3.26674038472878e-07!GO:0030117;membrane coat;3.26674038472878e-07!GO:0006099;tricarboxylic acid cycle;3.32906713581635e-07!GO:0046356;acetyl-CoA catabolic process;3.32906713581635e-07!GO:0046930;pore complex;3.64043721881258e-07!GO:0006084;acetyl-CoA metabolic process;3.82668990796109e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.18449714699099e-07!GO:0044431;Golgi apparatus part;4.99187932239893e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.79596472904637e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.21480510995828e-07!GO:0006793;phosphorus metabolic process;7.25226865241741e-07!GO:0006796;phosphate metabolic process;7.25226865241741e-07!GO:0031988;membrane-bound vesicle;8.72162904679678e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.73158754551112e-07!GO:0016070;RNA metabolic process;1.23470305580739e-06!GO:0006754;ATP biosynthetic process;1.23470305580739e-06!GO:0006753;nucleoside phosphate metabolic process;1.23470305580739e-06!GO:0048519;negative regulation of biological process;1.30708015449254e-06!GO:0016779;nucleotidyltransferase activity;1.38173798980274e-06!GO:0044440;endosomal part;1.42604681217909e-06!GO:0010008;endosome membrane;1.42604681217909e-06!GO:0045259;proton-transporting ATP synthase complex;1.54602226197413e-06!GO:0006752;group transfer coenzyme metabolic process;1.94110236570714e-06!GO:0051187;cofactor catabolic process;2.1605079288076e-06!GO:0050657;nucleic acid transport;2.38275366267003e-06!GO:0051236;establishment of RNA localization;2.38275366267003e-06!GO:0050658;RNA transport;2.38275366267003e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.427258813093e-06!GO:0008610;lipid biosynthetic process;2.55381848127232e-06!GO:0006403;RNA localization;2.63778360863125e-06!GO:0004386;helicase activity;2.94527625458218e-06!GO:0005762;mitochondrial large ribosomal subunit;3.89874088233554e-06!GO:0000315;organellar large ribosomal subunit;3.89874088233554e-06!GO:0007010;cytoskeleton organization and biogenesis;4.09235855741512e-06!GO:0004298;threonine endopeptidase activity;4.140449262543e-06!GO:0009109;coenzyme catabolic process;4.20976216051911e-06!GO:0016126;sterol biosynthetic process;4.33465134969888e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.60287273741069e-06!GO:0005773;vacuole;5.59553743546924e-06!GO:0032446;protein modification by small protein conjugation;7.1827550163951e-06!GO:0031410;cytoplasmic vesicle;8.73545140152336e-06!GO:0005770;late endosome;8.75393715720116e-06!GO:0031982;vesicle;9.14582274274521e-06!GO:0042802;identical protein binding;9.17150977708146e-06!GO:0016567;protein ubiquitination;9.81904868475667e-06!GO:0006082;organic acid metabolic process;1.0256091741716e-05!GO:0043623;cellular protein complex assembly;1.07874469193272e-05!GO:0051170;nuclear import;1.11438645411026e-05!GO:0019752;carboxylic acid metabolic process;1.2057790341247e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.22283468333479e-05!GO:0016607;nuclear speck;1.36025174177596e-05!GO:0008026;ATP-dependent helicase activity;1.43581285956249e-05!GO:0000314;organellar small ribosomal subunit;1.44606336555171e-05!GO:0005763;mitochondrial small ribosomal subunit;1.44606336555171e-05!GO:0016853;isomerase activity;1.51100790836184e-05!GO:0006366;transcription from RNA polymerase II promoter;1.51495264783033e-05!GO:0031252;leading edge;1.82025538907043e-05!GO:0006695;cholesterol biosynthetic process;1.95583344648157e-05!GO:0005525;GTP binding;1.9925086623386e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.00396212275828e-05!GO:0045454;cell redox homeostasis;2.01699595534689e-05!GO:0016310;phosphorylation;2.08934371274627e-05!GO:0000139;Golgi membrane;2.11202106681763e-05!GO:0006606;protein import into nucleus;2.28977620541764e-05!GO:0003697;single-stranded DNA binding;2.57334555062324e-05!GO:0007243;protein kinase cascade;2.64032858478991e-05!GO:0051329;interphase of mitotic cell cycle;3.59428092590856e-05!GO:0016563;transcription activator activity;3.59428092590856e-05!GO:0000323;lytic vacuole;3.73701096570528e-05!GO:0005764;lysosome;3.73701096570528e-05!GO:0008632;apoptotic program;3.87091341835989e-05!GO:0051325;interphase;4.04840444654982e-05!GO:0005788;endoplasmic reticulum lumen;4.04840444654982e-05!GO:0006839;mitochondrial transport;4.46849617111239e-05!GO:0051028;mRNA transport;4.85079605474126e-05!GO:0000245;spliceosome assembly;5.26522248635316e-05!GO:0019899;enzyme binding;5.4997950969192e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.59037915677001e-05!GO:0048522;positive regulation of cellular process;7.9796161626637e-05!GO:0005667;transcription factor complex;8.07654465643609e-05!GO:0046474;glycerophospholipid biosynthetic process;8.33585847639034e-05!GO:0048468;cell development;8.40110672813894e-05!GO:0051427;hormone receptor binding;8.54437416324902e-05!GO:0005819;spindle;8.7430922418603e-05!GO:0015980;energy derivation by oxidation of organic compounds;8.80139346869753e-05!GO:0030029;actin filament-based process;9.59894940795972e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000103364081916174!GO:0046467;membrane lipid biosynthetic process;0.000116665909255797!GO:0006613;cotranslational protein targeting to membrane;0.000122565603683261!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000125428098046985!GO:0003899;DNA-directed RNA polymerase activity;0.000132613000118959!GO:0003714;transcription corepressor activity;0.000135131362272552!GO:0044262;cellular carbohydrate metabolic process;0.000142776370825329!GO:0030118;clathrin coat;0.000142776370825329!GO:0005798;Golgi-associated vesicle;0.000144837268059312!GO:0000786;nucleosome;0.000145456325096868!GO:0005905;coated pit;0.000147347536549525!GO:0016568;chromatin modification;0.000161644001062041!GO:0043065;positive regulation of apoptosis;0.000165554460643239!GO:0006626;protein targeting to mitochondrion;0.000166719854885095!GO:0035257;nuclear hormone receptor binding;0.000174773967060391!GO:0009165;nucleotide biosynthetic process;0.000179420051386962!GO:0006091;generation of precursor metabolites and energy;0.000180977233609561!GO:0007264;small GTPase mediated signal transduction;0.000186047169973038!GO:0016044;membrane organization and biogenesis;0.000191721112431792!GO:0003713;transcription coactivator activity;0.000191944148400461!GO:0043681;protein import into mitochondrion;0.000192199316789285!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000208691211590716!GO:0048471;perinuclear region of cytoplasm;0.000224617843348168!GO:0008092;cytoskeletal protein binding;0.000225365286162811!GO:0065009;regulation of a molecular function;0.000235341956031959!GO:0043566;structure-specific DNA binding;0.000241936957773028!GO:0050794;regulation of cellular process;0.000246458750575775!GO:0043068;positive regulation of programmed cell death;0.000246783999719512!GO:0032561;guanyl ribonucleotide binding;0.00026726279987721!GO:0019001;guanyl nucleotide binding;0.00026726279987721!GO:0030867;rough endoplasmic reticulum membrane;0.000267346871272618!GO:0006520;amino acid metabolic process;0.000272811831666543!GO:0030176;integral to endoplasmic reticulum membrane;0.000311299316343042!GO:0031968;organelle outer membrane;0.00033858201873123!GO:0008033;tRNA processing;0.000343025091857539!GO:0005874;microtubule;0.000374226967648609!GO:0008637;apoptotic mitochondrial changes;0.000388743599646778!GO:0000151;ubiquitin ligase complex;0.000393025134404195!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000396597987429541!GO:0008250;oligosaccharyl transferase complex;0.000400513896690221!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.000426463608484159!GO:0005769;early endosome;0.000478518824112913!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000487200203559309!GO:0033116;ER-Golgi intermediate compartment membrane;0.00050157085304014!GO:0019867;outer membrane;0.000551451076935777!GO:0003724;RNA helicase activity;0.000551771599169469!GO:0007006;mitochondrial membrane organization and biogenesis;0.000553676678281506!GO:0005791;rough endoplasmic reticulum;0.00056462808240482!GO:0030133;transport vesicle;0.000593729619175869!GO:0005741;mitochondrial outer membrane;0.000612676534171953!GO:0009967;positive regulation of signal transduction;0.000624047406321461!GO:0043021;ribonucleoprotein binding;0.00062847890920622!GO:0045786;negative regulation of progression through cell cycle;0.000652006515516447!GO:0006261;DNA-dependent DNA replication;0.00065245570948178!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000666573772545661!GO:0030658;transport vesicle membrane;0.000672815459050949!GO:0051920;peroxiredoxin activity;0.000679285332228587!GO:0005885;Arp2/3 protein complex;0.000733476403203816!GO:0007088;regulation of mitosis;0.00077898385186475!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000792692650840287!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000868134635328833!GO:0005048;signal sequence binding;0.000895170657759448!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000947640973035082!GO:0015399;primary active transmembrane transporter activity;0.000947640973035082!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000965735336547147!GO:0007051;spindle organization and biogenesis;0.00102147195552!GO:0044452;nucleolar part;0.00111003849613467!GO:0005657;replication fork;0.00120107944974631!GO:0015992;proton transport;0.0012847827275703!GO:0001836;release of cytochrome c from mitochondria;0.0013789085776822!GO:0051789;response to protein stimulus;0.00140375978500798!GO:0006986;response to unfolded protein;0.00140375978500798!GO:0046489;phosphoinositide biosynthetic process;0.00144434893645057!GO:0005815;microtubule organizing center;0.00145195721212438!GO:0018196;peptidyl-asparagine modification;0.00152458853169524!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00152458853169524!GO:0005684;U2-dependent spliceosome;0.00155422121183804!GO:0008094;DNA-dependent ATPase activity;0.00161667069167629!GO:0006401;RNA catabolic process;0.001622952933929!GO:0031324;negative regulation of cellular metabolic process;0.00166122051426181!GO:0006818;hydrogen transport;0.00172747296134649!GO:0005813;centrosome;0.00174819839032725!GO:0006650;glycerophospholipid metabolic process;0.00176625805450576!GO:0051168;nuclear export;0.00176625805450576!GO:0050662;coenzyme binding;0.00177427017053025!GO:0030125;clathrin vesicle coat;0.00178074227044736!GO:0030665;clathrin coated vesicle membrane;0.00178074227044736!GO:0030119;AP-type membrane coat adaptor complex;0.00179921493497361!GO:0046483;heterocycle metabolic process;0.00186499258903496!GO:0006612;protein targeting to membrane;0.00190970901246983!GO:0004576;oligosaccharyl transferase activity;0.00200010845973297!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00221345611276295!GO:0031902;late endosome membrane;0.00228073094538618!GO:0019843;rRNA binding;0.00243566215986957!GO:0030660;Golgi-associated vesicle membrane;0.00245277860953473!GO:0016859;cis-trans isomerase activity;0.00245690317564843!GO:0001726;ruffle;0.00247971365100212!GO:0006220;pyrimidine nucleotide metabolic process;0.00250856417616149!GO:0008186;RNA-dependent ATPase activity;0.00251551282589844!GO:0043281;regulation of caspase activity;0.00256238988269297!GO:0006402;mRNA catabolic process;0.00256978798570523!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00261962399879664!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00261962399879664!GO:0043488;regulation of mRNA stability;0.00262376571329673!GO:0043487;regulation of RNA stability;0.00262376571329673!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00263456632176665!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00263456632176665!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00263456632176665!GO:0030131;clathrin adaptor complex;0.00263658736442001!GO:0009892;negative regulation of metabolic process;0.00278354043602505!GO:0030659;cytoplasmic vesicle membrane;0.00287644551380419!GO:0006643;membrane lipid metabolic process;0.00314485350398715!GO:0048518;positive regulation of biological process;0.00314485350398715!GO:0016564;transcription repressor activity;0.00317189460764251!GO:0030132;clathrin coat of coated pit;0.00331573139435376!GO:0000096;sulfur amino acid metabolic process;0.00334797664263155!GO:0035258;steroid hormone receptor binding;0.00341720007678162!GO:0032508;DNA duplex unwinding;0.00342852645514615!GO:0032392;DNA geometric change;0.00342852645514615!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00346974955867178!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00359847002172715!GO:0030880;RNA polymerase complex;0.00359847002172715!GO:0003684;damaged DNA binding;0.00376731455499676!GO:0051252;regulation of RNA metabolic process;0.00386167460065283!GO:0006414;translational elongation;0.00395804191365074!GO:0051287;NAD binding;0.00405971729153291!GO:0016272;prefoldin complex;0.00415054969219051!GO:0006979;response to oxidative stress;0.00432837279615675!GO:0000775;chromosome, pericentric region;0.00434435049387587!GO:0006595;polyamine metabolic process;0.00448033095995633!GO:0048487;beta-tubulin binding;0.00456811558811995!GO:0031072;heat shock protein binding;0.00469833003449166!GO:0005774;vacuolar membrane;0.00485709871906971!GO:0051540;metal cluster binding;0.00498623227836206!GO:0051536;iron-sulfur cluster binding;0.00498623227836206!GO:0006950;response to stress;0.00511784280454426!GO:0017166;vinculin binding;0.00517201068918362!GO:0004177;aminopeptidase activity;0.005173255361932!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00527312395626634!GO:0016301;kinase activity;0.00534128519701282!GO:0006383;transcription from RNA polymerase III promoter;0.00538788561221988!GO:0009112;nucleobase metabolic process;0.00541003974119754!GO:0006917;induction of apoptosis;0.00551159482370435!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00562576667215225!GO:0044433;cytoplasmic vesicle part;0.00576940135397564!GO:0000075;cell cycle checkpoint;0.00580075785472148!GO:0043492;ATPase activity, coupled to movement of substances;0.00601468892924814!GO:0004674;protein serine/threonine kinase activity;0.00607408079937305!GO:0051087;chaperone binding;0.0061354603081506!GO:0005996;monosaccharide metabolic process;0.0061758356795955!GO:0004004;ATP-dependent RNA helicase activity;0.00621255494445713!GO:0048037;cofactor binding;0.0062393973371785!GO:0008047;enzyme activator activity;0.00640460717133838!GO:0016741;transferase activity, transferring one-carbon groups;0.00650377070820799!GO:0044255;cellular lipid metabolic process;0.00661720601162286!GO:0006417;regulation of translation;0.00675379740888499!GO:0000049;tRNA binding;0.00682469781263322!GO:0004680;casein kinase activity;0.0068664955415873!GO:0006778;porphyrin metabolic process;0.00698098374504875!GO:0033013;tetrapyrrole metabolic process;0.00698098374504875!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00711142374735792!GO:0016363;nuclear matrix;0.00713105013194229!GO:0009116;nucleoside metabolic process;0.00715497071104769!GO:0008168;methyltransferase activity;0.00717736559943815!GO:0016049;cell growth;0.00719843664207588!GO:0006268;DNA unwinding during replication;0.00731347042361811!GO:0043154;negative regulation of caspase activity;0.00744273983026178!GO:0012502;induction of programmed cell death;0.00746227817046329!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00746912409849421!GO:0019318;hexose metabolic process;0.00747715961511338!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0075756405471826!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00764279374457488!GO:0000428;DNA-directed RNA polymerase complex;0.00764279374457488!GO:0006007;glucose catabolic process;0.00788941019457935!GO:0008361;regulation of cell size;0.00791567332605464!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00799623023107376!GO:0006644;phospholipid metabolic process;0.00813899637288498!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00814249607936699!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00833130345921321!GO:0016125;sterol metabolic process;0.00913682018037724!GO:0006519;amino acid and derivative metabolic process;0.00913682018037724!GO:0008139;nuclear localization sequence binding;0.00928725025076328!GO:0006611;protein export from nucleus;0.00938839907080441!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00954902794264922!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00969827058282027!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00975519624229992!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00978701001760041!GO:0015002;heme-copper terminal oxidase activity;0.00978701001760041!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00978701001760041!GO:0004129;cytochrome-c oxidase activity;0.00978701001760041!GO:0019206;nucleoside kinase activity;0.00978711622770333!GO:0006807;nitrogen compound metabolic process;0.0100460699955897!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.010190647440594!GO:0006066;alcohol metabolic process;0.0102262646394103!GO:0045893;positive regulation of transcription, DNA-dependent;0.0103270296838356!GO:0001558;regulation of cell growth;0.0103403655691208!GO:0045941;positive regulation of transcription;0.0103789067224082!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.010573409370508!GO:0000059;protein import into nucleus, docking;0.0106039690683541!GO:0030134;ER to Golgi transport vesicle;0.0107262382858259!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.010806934763969!GO:0030521;androgen receptor signaling pathway;0.0111023079678242!GO:0050790;regulation of catalytic activity;0.0117108111009608!GO:0006749;glutathione metabolic process;0.0117904316366994!GO:0048500;signal recognition particle;0.0120301339900305!GO:0006740;NADPH regeneration;0.0123017959640689!GO:0006098;pentose-phosphate shunt;0.0123017959640689!GO:0007242;intracellular signaling cascade;0.0125841571997684!GO:0044437;vacuolar part;0.0125899369580224!GO:0006497;protein amino acid lipidation;0.0131885418291431!GO:0033673;negative regulation of kinase activity;0.0134066868487799!GO:0006469;negative regulation of protein kinase activity;0.0134066868487799!GO:0005758;mitochondrial intermembrane space;0.0136082521149299!GO:0051128;regulation of cellular component organization and biogenesis;0.0136489282058243!GO:0042168;heme metabolic process;0.013659856151865!GO:0008652;amino acid biosynthetic process;0.0141333890201425!GO:0001666;response to hypoxia;0.0141724747228875!GO:0003779;actin binding;0.0143073676816979!GO:0005869;dynactin complex;0.0143307592642591!GO:0006633;fatty acid biosynthetic process;0.0143307592642591!GO:0003729;mRNA binding;0.0146536976380949!GO:0007017;microtubule-based process;0.0147993797021628!GO:0005765;lysosomal membrane;0.0150886362836008!GO:0043284;biopolymer biosynthetic process;0.0151134513743057!GO:0030433;ER-associated protein catabolic process;0.0151859097768796!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0151859097768796!GO:0012506;vesicle membrane;0.0153960303783003!GO:0006509;membrane protein ectodomain proteolysis;0.0155220453399676!GO:0033619;membrane protein proteolysis;0.0155220453399676!GO:0006506;GPI anchor biosynthetic process;0.0158311959535279!GO:0006779;porphyrin biosynthetic process;0.0158311959535279!GO:0033014;tetrapyrrole biosynthetic process;0.0158311959535279!GO:0008538;proteasome activator activity;0.0162648726323771!GO:0003678;DNA helicase activity;0.0162648726323771!GO:0030027;lamellipodium;0.0165675248662956!GO:0007021;tubulin folding;0.0166861262910669!GO:0051348;negative regulation of transferase activity;0.0168082242981597!GO:0022890;inorganic cation transmembrane transporter activity;0.0168082242981597!GO:0006733;oxidoreduction coenzyme metabolic process;0.0168366511824934!GO:0030384;phosphoinositide metabolic process;0.0168440113491!GO:0051539;4 iron, 4 sulfur cluster binding;0.0169307464812153!GO:0051101;regulation of DNA binding;0.0169961145366347!GO:0050789;regulation of biological process;0.0174257271987682!GO:0046822;regulation of nucleocytoplasmic transport;0.0174461116579076!GO:0030127;COPII vesicle coat;0.0174697010152341!GO:0012507;ER to Golgi transport vesicle membrane;0.0174697010152341!GO:0016791;phosphoric monoester hydrolase activity;0.0174697010152341!GO:0006352;transcription initiation;0.0177130408488538!GO:0030145;manganese ion binding;0.0178284075279499!GO:0051098;regulation of binding;0.0179049050562276!GO:0032594;protein transport within lipid bilayer;0.0179194394828659!GO:0032907;transforming growth factor-beta3 production;0.0179194394828659!GO:0032596;protein transport into lipid raft;0.0179194394828659!GO:0032910;regulation of transforming growth factor-beta3 production;0.0179194394828659!GO:0032595;B cell receptor transport within lipid bilayer;0.0179194394828659!GO:0033606;chemokine receptor transport within lipid bilayer;0.0179194394828659!GO:0032600;chemokine receptor transport out of lipid raft;0.0179194394828659!GO:0032599;protein transport out of lipid raft;0.0179194394828659!GO:0032597;B cell receptor transport into lipid raft;0.0179194394828659!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0179194394828659!GO:0009119;ribonucleoside metabolic process;0.0182976459123099!GO:0005975;carbohydrate metabolic process;0.0184774694613528!GO:0006891;intra-Golgi vesicle-mediated transport;0.0186191078681998!GO:0008629;induction of apoptosis by intracellular signals;0.0187347404310272!GO:0016311;dephosphorylation;0.0189691756683433!GO:0005862;muscle thin filament tropomyosin;0.0190868391132391!GO:0009308;amine metabolic process;0.0194922496465916!GO:0031529;ruffle organization and biogenesis;0.0195529858591906!GO:0016860;intramolecular oxidoreductase activity;0.0195736553367331!GO:0006302;double-strand break repair;0.0202038018391774!GO:0008312;7S RNA binding;0.0202241181415481!GO:0031970;organelle envelope lumen;0.0206158590885988!GO:0031326;regulation of cellular biosynthetic process;0.0209874725542613!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0214009838650512!GO:0030031;cell projection biogenesis;0.0215448524952888!GO:0006767;water-soluble vitamin metabolic process;0.0215883406540471!GO:0009451;RNA modification;0.0217253145271554!GO:0000082;G1/S transition of mitotic cell cycle;0.022416010068143!GO:0031124;mRNA 3'-end processing;0.022421523475623!GO:0005938;cell cortex;0.0230252336072644!GO:0005832;chaperonin-containing T-complex;0.0232531060358251!GO:0003711;transcription elongation regulator activity;0.0233995826412733!GO:0006289;nucleotide-excision repair;0.023609881032147!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0238976962265208!GO:0045047;protein targeting to ER;0.0238976962265208!GO:0000209;protein polyubiquitination;0.0241287040458277!GO:0006458;'de novo' protein folding;0.0241287040458277!GO:0051084;'de novo' posttranslational protein folding;0.0241287040458277!GO:0016197;endosome transport;0.0241847413981013!GO:0006518;peptide metabolic process;0.0244394383077211!GO:0006505;GPI anchor metabolic process;0.0245673104006693!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0246905382582409!GO:0000086;G2/M transition of mitotic cell cycle;0.0248885899284546!GO:0006984;ER-nuclear signaling pathway;0.0250746427920584!GO:0046365;monosaccharide catabolic process;0.0254047784094028!GO:0043022;ribosome binding;0.0254502783794944!GO:0008287;protein serine/threonine phosphatase complex;0.0254502783794944!GO:0007346;regulation of progression through mitotic cell cycle;0.0254502783794944!GO:0006144;purine base metabolic process;0.0258512588773976!GO:0000287;magnesium ion binding;0.0259793311521836!GO:0005637;nuclear inner membrane;0.0259793311521836!GO:0042158;lipoprotein biosynthetic process;0.0260150872305239!GO:0009889;regulation of biosynthetic process;0.0264029988966974!GO:0051052;regulation of DNA metabolic process;0.0264171613959277!GO:0006672;ceramide metabolic process;0.0264316400498716!GO:0006284;base-excision repair;0.0266615179810732!GO:0046394;carboxylic acid biosynthetic process;0.0268267690400882!GO:0016053;organic acid biosynthetic process;0.0268267690400882!GO:0004448;isocitrate dehydrogenase activity;0.0270433759633825!GO:0051336;regulation of hydrolase activity;0.0270907243542362!GO:0016408;C-acyltransferase activity;0.0276112349531669!GO:0046519;sphingoid metabolic process;0.0276112349531669!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0279918822885899!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0281988521504691!GO:0033559;unsaturated fatty acid metabolic process;0.0289776879260377!GO:0006636;unsaturated fatty acid biosynthetic process;0.0289776879260377!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0291834860629119!GO:0000339;RNA cap binding;0.0291834860629119!GO:0030663;COPI coated vesicle membrane;0.0291834860629119!GO:0030126;COPI vesicle coat;0.0291834860629119!GO:0043189;H4/H2A histone acetyltransferase complex;0.0291897981450892!GO:0009303;rRNA transcription;0.0295709938286857!GO:0042393;histone binding;0.0295709938286857!GO:0006783;heme biosynthetic process;0.0298269670294674!GO:0030508;thiol-disulfide exchange intermediate activity;0.0298269670294674!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0299355216868938!GO:0007265;Ras protein signal transduction;0.0303717412915601!GO:0043433;negative regulation of transcription factor activity;0.0304624331775187!GO:0009124;nucleoside monophosphate biosynthetic process;0.0304624331775187!GO:0009123;nucleoside monophosphate metabolic process;0.0304624331775187!GO:0031301;integral to organelle membrane;0.0308846442563597!GO:0000305;response to oxygen radical;0.0308846442563597!GO:0006368;RNA elongation from RNA polymerase II promoter;0.030891280993819!GO:0009262;deoxyribonucleotide metabolic process;0.030903058269466!GO:0035267;NuA4 histone acetyltransferase complex;0.0312080842567049!GO:0051881;regulation of mitochondrial membrane potential;0.0315605160923803!GO:0045334;clathrin-coated endocytic vesicle;0.0322225283080003!GO:0003756;protein disulfide isomerase activity;0.0322756472917787!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0322756472917787!GO:0015631;tubulin binding;0.0324665148196251!GO:0030503;regulation of cell redox homeostasis;0.0331623891725652!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0333739991753868!GO:0045039;protein import into mitochondrial inner membrane;0.0333739991753868!GO:0035035;histone acetyltransferase binding;0.0335571685747262!GO:0000303;response to superoxide;0.0336364508034843!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0340571032836963!GO:0010257;NADH dehydrogenase complex assembly;0.0340571032836963!GO:0033108;mitochondrial respiratory chain complex assembly;0.0340571032836963!GO:0050681;androgen receptor binding;0.0344935686123733!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0348094447275469!GO:0006919;caspase activation;0.0359710698330288!GO:0008601;protein phosphatase type 2A regulator activity;0.0361619237914931!GO:0000792;heterochromatin;0.0364603612570618!GO:0008426;protein kinase C inhibitor activity;0.0366170079214784!GO:0046164;alcohol catabolic process;0.0367262784445696!GO:0019320;hexose catabolic process;0.0367730297529534!GO:0051059;NF-kappaB binding;0.0370782992821121!GO:0008415;acyltransferase activity;0.0371597515125798!GO:0016481;negative regulation of transcription;0.0371747568981894!GO:0030496;midbody;0.037174842122563!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.037174842122563!GO:0008299;isoprenoid biosynthetic process;0.0382388761759213!GO:0006739;NADP metabolic process;0.0383509389655288!GO:0007052;mitotic spindle organization and biogenesis;0.0387239931601722!GO:0000097;sulfur amino acid biosynthetic process;0.039411756605415!GO:0042769;DNA damage response, detection of DNA damage;0.0396073477455483!GO:0006275;regulation of DNA replication;0.0412019493598932!GO:0040008;regulation of growth;0.0412661203803606!GO:0032984;macromolecular complex disassembly;0.0419319247974939!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0419319247974939!GO:0006629;lipid metabolic process;0.0420705569360213!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0421637882742828!GO:0015036;disulfide oxidoreductase activity;0.0421637882742828!GO:0008243;plasminogen activator activity;0.0422352684431744!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0423622407443739!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0424362343249164!GO:0008537;proteasome activator complex;0.0425449472151186!GO:0048144;fibroblast proliferation;0.0428730028069734!GO:0048145;regulation of fibroblast proliferation;0.0428730028069734!GO:0030911;TPR domain binding;0.0428730028069734!GO:0006730;one-carbon compound metabolic process;0.0431602572454993!GO:0043624;cellular protein complex disassembly;0.0437972513825591!GO:0030137;COPI-coated vesicle;0.0439091890928349!GO:0046128;purine ribonucleoside metabolic process;0.0439091890928349!GO:0042278;purine nucleoside metabolic process;0.0439091890928349!GO:0016746;transferase activity, transferring acyl groups;0.0445651647252846!GO:0009218;pyrimidine ribonucleotide metabolic process;0.0445651647252846!GO:0043414;biopolymer methylation;0.0447034657160541!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0451125793840617!GO:0012510;trans-Golgi network transport vesicle membrane;0.0451125793840617!GO:0030140;trans-Golgi network transport vesicle;0.0454591193609208!GO:0006096;glycolysis;0.0459091875795253!GO:0043256;laminin complex;0.0459717131437966!GO:0031371;ubiquitin conjugating enzyme complex;0.0460827686940193!GO:0008283;cell proliferation;0.04664253028376!GO:0051090;regulation of transcription factor activity;0.0477534942694127!GO:0030913;paranodal junction assembly;0.0477770283639494!GO:0032288;myelin formation;0.0477770283639494!GO:0009166;nucleotide catabolic process;0.0479193454404684!GO:0005856;cytoskeleton;0.0483027183201977!GO:0008234;cysteine-type peptidase activity;0.0483466119034905!GO:0051085;chaperone cofactor-dependent protein folding;0.0483466119034905!GO:0004721;phosphoprotein phosphatase activity;0.0492940434404403!GO:0008625;induction of apoptosis via death domain receptors;0.0495325343210832!GO:0048146;positive regulation of fibroblast proliferation;0.049843026234328!GO:0003690;double-stranded DNA binding;0.0498631665986985
|sample_id=11515
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=kidney
|top_motifs=ZEB1:1.89887899719;SNAI1..3:1.83032620745;MYOD1:1.71795880399;XCPE1{core}:1.71278791212;HNF1A:1.59039326191;ADNP_IRX_SIX_ZHX:1.58852351326;NKX2-3_NKX2-5:1.43597415401;LMO2:1.27577304918;ZNF148:1.15644575169;PBX1:1.14123927821;RXRA_VDR{dimer}:1.09607091065;SP1:1.02152117089;LHX3,4:0.974205926821;ESRRA:0.9668192794;bHLH_family:0.960848819856;PPARG:0.885595426349;TEAD1:0.818914016704;HOX{A5,B5}:0.781617279313;NFY{A,B,C}:0.742532346504;EBF1:0.739679632409;TBX4,5:0.724715600346;TEF:0.722961479197;TFCP2:0.713464077007;GFI1:0.709810639561;POU2F1..3:0.702497728637;HAND1,2:0.698751923888;VSX1,2:0.652771342414;TFDP1:0.560787341176;ZNF423:0.552453803101;FOXQ1:0.533255007711;GLI1..3:0.494567071336;E2F1..5:0.478268649506;ONECUT1,2:0.475538194127;LEF1_TCF7_TCF7L1,2:0.462911082332;GZF1:0.427753737334;ZIC1..3:0.417413856432;POU1F1:0.413118551519;PAX5:0.405360942266;NR5A1,2:0.398327234673;CDC5L:0.391342179536;TFAP2{A,C}:0.379401994126;NR3C1:0.378384368895;FOSL2:0.372594090215;NR6A1:0.354774094298;TBP:0.352569946072;SPZ1:0.324649840338;PRRX1,2:0.323631659403;FOS_FOS{B,L1}_JUN{B,D}:0.295017661844;TP53:0.287637846018;HIC1:0.283079074201;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.252888286012;GTF2A1,2:0.22340210708;CRX:0.205864208973;POU5F1:0.200665481381;TLX1..3_NFIC{dimer}:0.199602440659;HOX{A6,A7,B6,B7}:0.184228697983;BACH2:0.174937131163;NFE2:0.139231783849;STAT5{A,B}:0.136819917721;TFAP2B:0.130329211307;MTF1:0.119946771237;NKX3-2:0.118602362376;SOX{8,9,10}:0.105921036466;NANOG:0.0920925952641;NFKB1_REL_RELA:0.0829896224237;HNF4A_NR2F1,2:0.046765915311;JUN:0.0200472728039;NFE2L2:0.0188857362761;GFI1B:0.0176652235326;MYB:0.016361631449;PAX8:0.0108155601568;ALX1:0.0040668921688;IKZF1:0.00171464399155;NR1H4:-0.00890259746001;EP300:-0.0111440725352;HOXA9_MEIS1:-0.0160143681159;NFE2L1:-0.0184019218767;ESR1:-0.0483555837481;PDX1:-0.0495322407934;HBP1_HMGB_SSRP1_UBTF:-0.0519865129144;AR:-0.0579628687615;TFAP4:-0.0632111352144;PAX1,9:-0.0677070594011;PITX1..3:-0.0681680265177;MAZ:-0.0716014452419;OCT4_SOX2{dimer}:-0.0723589693231;ZFP161:-0.080305363544;ARID5B:-0.101025207952;ATF6:-0.104298238888;MEF2{A,B,C,D}:-0.106964673437;ZNF143:-0.1090348426;STAT2,4,6:-0.115334393186;CEBPA,B_DDIT3:-0.131650297432;FOXD3:-0.156803642423;RORA:-0.162266314261;GATA6:-0.175234154072;RREB1:-0.181122742423;RXR{A,B,G}:-0.18976911532;MED-1{core}:-0.208336852875;CUX2:-0.218488886825;PAX6:-0.223391806938;HLF:-0.236202633823;ZBTB6:-0.241312781659;ETS1,2:-0.250494028314;FOXM1:-0.255870982936;ELK1,4_GABP{A,B1}:-0.259709802753;MTE{core}:-0.26097269153;AIRE:-0.262104289639;MYBL2:-0.265268843876;FOXL1:-0.267481910337;NRF1:-0.276577154463;DBP:-0.283127421008;IRF7:-0.293738941598;GTF2I:-0.29524002306;POU3F1..4:-0.302994465006;NHLH1,2:-0.306592161713;SOX2:-0.322566323325;EN1,2:-0.329846520616;RFX1:-0.340586128988;NKX2-1,4:-0.34882090286;ALX4:-0.352224321064;REST:-0.359652269486;KLF4:-0.385044610084;T:-0.388956387064;NKX2-2,8:-0.39717754999;HES1:-0.421608128978;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.424003306887;SRF:-0.428571304514;NFIL3:-0.434915868101;SPIB:-0.436331277896;NKX6-1,2:-0.440141820098;ATF2:-0.446444694217;HIF1A:-0.461258996847;GCM1,2:-0.483492063119;NKX3-1:-0.491917070486;IRF1,2:-0.495699724943;RUNX1..3:-0.501160444438;UFEwm:-0.511895632242;TAL1_TCF{3,4,12}:-0.51632878188;BREu{core}:-0.536501849903;HOX{A4,D4}:-0.541492426827;PAX3,7:-0.548244768601;FOXA2:-0.552423960422;EGR1..3:-0.559118307125;HMX1:-0.562830691235;SPI1:-0.588685267821;FOX{F1,F2,J1}:-0.613751816548;ATF5_CREB3:-0.615018058035;XBP1:-0.619009695547;ELF1,2,4:-0.641274159633;PAX2:-0.645899885448;SOX17:-0.648433290921;FOXN1:-0.668098270235;PATZ1:-0.687973389285;SREBF1,2:-0.689458712276;RFX2..5_RFXANK_RFXAP:-0.700909343538;ATF4:-0.708153077933;YY1:-0.728867327242;STAT1,3:-0.738046346343;PRDM1:-0.743612615324;CDX1,2,4:-0.748282665185;FOX{I1,J2}:-0.757506758941;HSF1,2:-0.763859766552;NFATC1..3:-0.786373719986;FOXP1:-0.790793707881;ZNF238:-0.809180200112;IKZF2:-0.814839298683;MZF1:-0.864564876198;TGIF1:-0.875347898231;SOX5:-0.89593102704;POU6F1:-0.931181883187;DMAP1_NCOR{1,2}_SMARC:-0.948876092793;MAFB:-0.958745791937;AHR_ARNT_ARNT2:-0.963415462604;FOXO1,3,4:-0.975775120754;MYFfamily:-0.98582970235;FOX{D1,D2}:-0.986759396274;SMAD1..7,9:-0.989145459071;EVI1:-1.03233833174;CREB1:-1.04615095932;NFIX:-1.08180717007;TOPORS:-1.12535596929;ZBTB16:-1.13994250225;ZNF384:-1.21122843317;FOXP3:-1.23097343658;PAX4:-1.23119575683;TLX2:-1.24277204908;HMGA1,2:-1.27105345486;RBPJ:-1.2959834224;BPTF:-1.34837576801;NANOG{mouse}:-1.40845998372;GATA4:-1.54693050619
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11515-119H3;search_select_hide=table117:FF:11515-119H3
}}
}}

Latest revision as of 18:05, 4 June 2020

Name:Renal Proximal Tubular Epithelial Cell, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11330
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typeepithelial cell of kidney, proximal tubule
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberlot:5127
catalog numberSC4105
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005391
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11330 CAGE DRX008437 DRR009309
Accession ID Hg19

Library idBAMCTSS
CNhs11330 DRZ000734 DRZ002119
Accession ID Hg38

Library idBAMCTSS
CNhs11330 DRZ012084 DRZ013469
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005391
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.CCGTCC sRNA-Seq DRX037239 DRR041605
Accession ID Hg19

Library idBAMCTSS
SRhi10014.CCGTCC DRZ007247


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.102
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.127
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0643
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0663
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.351
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0881
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.112
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.101
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.518
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.334
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0127
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0986
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.534
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11330

Jaspar motifP-value
MA0002.21
MA0003.10.391
MA0004.10.524
MA0006.10.0456
MA0007.10.0484
MA0009.10.306
MA0014.10.229
MA0017.10.0164
MA0018.20.189
MA0019.10.64
MA0024.10.0605
MA0025.10.613
MA0027.10.158
MA0028.10.446
MA0029.10.273
MA0030.10.455
MA0031.10.0411
MA0035.20.0727
MA0038.10.00242
MA0039.20.00755
MA0040.10.813
MA0041.10.283
MA0042.10.957
MA0043.10.238
MA0046.11.83958e-31
MA0047.20.309
MA0048.10.528
MA0050.10.128
MA0051.10.909
MA0052.10.329
MA0055.10.0433
MA0057.10.08
MA0058.10.52
MA0059.10.497
MA0060.14.51853e-10
MA0061.10.853
MA0062.20.0709
MA0065.20.0478
MA0066.10.652
MA0067.10.0186
MA0068.10.721
MA0069.10.154
MA0070.10.0529
MA0071.10.451
MA0072.10.675
MA0073.10.99
MA0074.10.777
MA0076.10.0519
MA0077.10.271
MA0078.10.451
MA0079.20.532
MA0080.20.0148
MA0081.10.117
MA0083.10.411
MA0084.10.00418
MA0087.10.482
MA0088.10.894
MA0090.12.42803e-4
MA0091.10.0521
MA0092.10.91
MA0093.10.503
MA0099.22.8437e-10
MA0100.10.524
MA0101.10.163
MA0102.20.0128
MA0103.12.07991e-8
MA0104.20.844
MA0105.10.35
MA0106.10.098
MA0107.10.155
MA0108.22.32413e-5
MA0111.10.439
MA0112.20.464
MA0113.10.795
MA0114.10.0368
MA0115.10.0554
MA0116.10.524
MA0117.10.0785
MA0119.10.932
MA0122.10.275
MA0124.10.36
MA0125.10.214
MA0131.10.32
MA0135.10.265
MA0136.10.111
MA0137.20.527
MA0138.20.754
MA0139.10.585
MA0140.10.759
MA0141.10.184
MA0142.10.488
MA0143.10.296
MA0144.10.432
MA0145.10.0888
MA0146.10.243
MA0147.10.98
MA0148.10.764
MA0149.10.0301
MA0150.10.898
MA0152.10.124
MA0153.14.15736e-18
MA0154.10.824
MA0155.10.373
MA0156.10.14
MA0157.10.0706
MA0159.10.128
MA0160.10.078
MA0162.10.159
MA0163.10.224
MA0164.10.649
MA0258.10.72
MA0259.10.526



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11330

Novel motifP-value
10.528
100.122
1000.285
1010.00869
1020.321
1030.732
1040.88
1050.0996
1060.169
1070.0144
1080.666
1090.0556
110.518
1100.541
1110.972
1120.508
1130.115
1140.0579
1150.584
1160.463
1170.359
1180.562
1190.493
120.825
1200.187
1210.34
1220.0179
1230.0468
1240.156
1250.244
1260.4
1270.352
1280.439
1290.0372
130.152
1300.322
1310.0751
1320.204
1330.0185
1340.55
1350.327
1360.076
1370.283
1380.209
1390.102
140.388
1400.468
1410.541
1420.805
1430.569
1440.316
1450.485
1460.0211
1470.428
1480.31
1490.833
150.846
1500.257
1510.69
1520.057
1530.52
1540.284
1550.881
1560.0216
1570.955
1580.303
1590.516
160.245
1600.171
1610.705
1620.138
1630.495
1640.3
1650.441
1660.537
1670.315
1680.812
1690.288
170.422
180.958
190.972
20.267
200.932
210.337
220.419
230.38
240.455
250.866
260.309
270.292
280.92
290.76
30.367
300.0286
310.663
320.0457
330.0374
340.565
350.00706
360.904
370.736
380.394
390.242
40.17
400.0081
410.288
420.765
430.697
440.595
450.208
460.962
470.697
480.436
490.661
50.53
500.173
510.807
520.276
530.573
540.657
550.377
560.203
570.884
580.674
590.241
60.154
600.291
610.586
620.414
630.194
640.393
650.334
660.0331
670.657
680.588
690.443
70.406
700.0846
710.38
720.841
730.0785
740.198
750.615
760.0861
770.00637
780.642
790.0189
80.522
800.418
810.144
820.0873
830.982
840.649
850.28
860.458
870.0195
880.972
890.162
90.81
900.261
910.417
920.683
930.58
940.443
950.333
960.695
970.83
980.974
996.99081e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11330


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000255 (eukaryotic cell)
0000239 (brush border epithelial cell)
1000615 (kidney cortex tubule cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
0002306 (epithelial cell of proximal tubule)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0006853 (renal cortex tubule)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0007685 (region of nephron tubule)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0004134 (proximal tubule)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000155 (human renal proximal tubular epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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