FF:11515-119H3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005391 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005391 | ||
|accession_numbers=CAGE;DRX008437;DRR009309;DRZ000734;DRZ002119;DRZ012084;DRZ013469 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037239;DRR041605;DRZ007247 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151,FF:0000155 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor1.CNhs11330.11515-119H3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11515-119H3 | |id=FF:11515-119H3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000155 | ||
|is_obsolete= | |||
|library_id=CNhs11330 | |||
|library_id_phase_based=2:CNhs11330 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11515 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CCGTCC.11515 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11515 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CCGTCC.11515 | |||
|name=Renal Proximal Tubular Epithelial Cell, donor1 | |name=Renal Proximal Tubular Epithelial Cell, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11330,LSID768,release014,COMPLETED | |profile_hcage=CNhs11330,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.089452885343833,0,0,0,0,0.0863353375670778,0.178905770687666,-0.0959275275184245,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0547221025255669,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.105174491695582,0,0,0,0,0,0,0,0,0.198130038958915,0,0,0,0,0,0.0052870611787676,0.0986009078228607,0.00160854658025561,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986009078228607,0,0,0,-0.0240167490785739,0,0,0,0,0,0,0,0,0,0,0.0395413152553816,-0.087870718869137,0,0,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0562488823677925,0,0,0,-0.0596045631535823,-0.0318201072352323,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC4105 | |rna_catalog_number=SC4105 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119H3 | |rna_tube_id=119H3 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.CCGTCC | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.32045524187992e-226!GO:0005737;cytoplasm;1.27525368106865e-208!GO:0043226;organelle;9.48651829599915e-179!GO:0043229;intracellular organelle;1.59234522339778e-178!GO:0043231;intracellular membrane-bound organelle;1.22264491904146e-172!GO:0043227;membrane-bound organelle;3.03233886234083e-172!GO:0044444;cytoplasmic part;2.50591093575398e-147!GO:0044422;organelle part;3.11125269828764e-147!GO:0044446;intracellular organelle part;4.99363836660576e-146!GO:0032991;macromolecular complex;1.00646958001543e-90!GO:0005739;mitochondrion;2.58903970090268e-83!GO:0030529;ribonucleoprotein complex;3.68803373520322e-82!GO:0044237;cellular metabolic process;3.37082191203111e-78!GO:0044238;primary metabolic process;9.35329053467232e-78!GO:0005515;protein binding;8.18154798089269e-72!GO:0043170;macromolecule metabolic process;7.15075499091629e-66!GO:0043233;organelle lumen;1.00519912190136e-64!GO:0031974;membrane-enclosed lumen;1.00519912190136e-64!GO:0044428;nuclear part;3.1900081295488e-61!GO:0003723;RNA binding;5.44096206087709e-59!GO:0031090;organelle membrane;1.3485064343739e-58!GO:0005840;ribosome;4.22228816478758e-55!GO:0044429;mitochondrial part;4.56315887239669e-55!GO:0009058;biosynthetic process;2.94687558241773e-53!GO:0019538;protein metabolic process;6.56573292441694e-53!GO:0006412;translation;7.84678030245389e-53!GO:0005634;nucleus;1.37134060156304e-52!GO:0031967;organelle envelope;7.29000000140563e-49!GO:0031975;envelope;2.11753113182804e-48!GO:0044249;cellular biosynthetic process;3.86879825620244e-48!GO:0003735;structural constituent of ribosome;5.28502133313516e-48!GO:0044260;cellular macromolecule metabolic process;9.26962669506683e-47!GO:0016043;cellular component organization and biogenesis;1.0231607771225e-46!GO:0044267;cellular protein metabolic process;1.78164170597303e-46!GO:0043234;protein complex;3.37707713126557e-45!GO:0009059;macromolecule biosynthetic process;3.95121405453254e-43!GO:0033036;macromolecule localization;1.22125564068228e-41!GO:0015031;protein transport;1.39399807087152e-41!GO:0033279;ribosomal subunit;6.64371369258441e-41!GO:0008104;protein localization;3.42204701314359e-39!GO:0006396;RNA processing;5.01335632877582e-39!GO:0045184;establishment of protein localization;2.03656767340331e-38!GO:0043228;non-membrane-bound organelle;7.38017054699516e-38!GO:0043232;intracellular non-membrane-bound organelle;7.38017054699516e-38!GO:0005829;cytosol;8.32346407960543e-38!GO:0005740;mitochondrial envelope;2.39651365747203e-36!GO:0046907;intracellular transport;5.23871280582005e-35!GO:0006996;organelle organization and biogenesis;6.28993068213119e-35!GO:0031981;nuclear lumen;2.61291506237015e-34!GO:0031966;mitochondrial membrane;5.83942169882126e-34!GO:0019866;organelle inner membrane;2.11975631184376e-32!GO:0043283;biopolymer metabolic process;4.19257104959608e-31!GO:0005743;mitochondrial inner membrane;4.71246258745875e-31!GO:0065003;macromolecular complex assembly;6.08998680064883e-31!GO:0016071;mRNA metabolic process;1.19127250621991e-29!GO:0006886;intracellular protein transport;4.58896711384081e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.50627216464939e-28!GO:0008380;RNA splicing;8.24136693889652e-28!GO:0022607;cellular component assembly;9.06502976674386e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.66635348840497e-26!GO:0006397;mRNA processing;2.8670668973365e-25!GO:0012505;endomembrane system;2.3204927384397e-24!GO:0006259;DNA metabolic process;1.47606767182813e-23!GO:0010467;gene expression;2.55328978913643e-23!GO:0044445;cytosolic part;4.36282162649902e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.63118469981082e-23!GO:0031980;mitochondrial lumen;6.34510759744743e-23!GO:0005759;mitochondrial matrix;6.34510759744743e-23!GO:0051649;establishment of cellular localization;8.35792662708467e-23!GO:0051641;cellular localization;8.35792662708467e-23!GO:0007049;cell cycle;2.98005037456741e-22!GO:0015934;large ribosomal subunit;4.17718129422068e-21!GO:0005681;spliceosome;5.91812965911074e-21!GO:0006119;oxidative phosphorylation;7.19221385976689e-21!GO:0000166;nucleotide binding;8.36081823706348e-21!GO:0015935;small ribosomal subunit;9.78960226587185e-21!GO:0005783;endoplasmic reticulum;3.31283882341606e-20!GO:0044455;mitochondrial membrane part;1.87295705073708e-19!GO:0051186;cofactor metabolic process;2.76469528809477e-19!GO:0048770;pigment granule;6.19306181510859e-19!GO:0042470;melanosome;6.19306181510859e-19!GO:0005654;nucleoplasm;1.52426290121765e-18!GO:0016462;pyrophosphatase activity;3.48243089979734e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.42788774598269e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;6.27104698321771e-18!GO:0016874;ligase activity;8.59457079468561e-18!GO:0005730;nucleolus;1.23260521914824e-17!GO:0044265;cellular macromolecule catabolic process;1.261713569841e-17!GO:0006457;protein folding;1.3728285425042e-17!GO:0000278;mitotic cell cycle;1.47890685179493e-17!GO:0017111;nucleoside-triphosphatase activity;1.8194109732827e-17!GO:0044432;endoplasmic reticulum part;2.02040266781563e-17!GO:0022402;cell cycle process;1.05109232096496e-16!GO:0005761;mitochondrial ribosome;1.10279781797201e-16!GO:0000313;organellar ribosome;1.10279781797201e-16!GO:0044248;cellular catabolic process;3.90861761493018e-16!GO:0005794;Golgi apparatus;4.73572922367968e-16!GO:0032553;ribonucleotide binding;1.19890304014504e-15!GO:0032555;purine ribonucleotide binding;1.19890304014504e-15!GO:0005746;mitochondrial respiratory chain;1.25422613326356e-15!GO:0009057;macromolecule catabolic process;1.90990613083256e-15!GO:0012501;programmed cell death;2.00296475571038e-15!GO:0017076;purine nucleotide binding;2.97288292507586e-15!GO:0006915;apoptosis;3.31976367539257e-15!GO:0043285;biopolymer catabolic process;3.33276585187906e-15!GO:0006732;coenzyme metabolic process;3.51891214248576e-15!GO:0022618;protein-RNA complex assembly;4.47705485630412e-15!GO:0043412;biopolymer modification;4.91472742744644e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;6.13955422500246e-15!GO:0000502;proteasome complex (sensu Eukaryota);6.17957891805457e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.19208762991796e-15!GO:0006605;protein targeting;7.34700612088434e-15!GO:0044451;nucleoplasm part;7.77281951823779e-15!GO:0019941;modification-dependent protein catabolic process;9.58577931378738e-15!GO:0043632;modification-dependent macromolecule catabolic process;9.58577931378738e-15!GO:0044257;cellular protein catabolic process;1.84818178777297e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.88135649135914e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.24381125322804e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.68232451226157e-14!GO:0003954;NADH dehydrogenase activity;2.68232451226157e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.68232451226157e-14!GO:0008219;cell death;5.10762391581122e-14!GO:0016265;death;5.10762391581122e-14!GO:0008134;transcription factor binding;5.13350596280568e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.5848204611016e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;8.13060887363363e-14!GO:0006512;ubiquitin cycle;8.74268342565138e-14!GO:0005789;endoplasmic reticulum membrane;1.12834487890228e-13!GO:0006464;protein modification process;1.16532081400077e-13!GO:0005635;nuclear envelope;1.19903449977799e-13!GO:0005524;ATP binding;3.78938429809084e-13!GO:0051082;unfolded protein binding;3.8418368910841e-13!GO:0000087;M phase of mitotic cell cycle;4.42716994321003e-13!GO:0007067;mitosis;4.68200388606969e-13!GO:0022403;cell cycle phase;5.00729018749773e-13!GO:0032559;adenyl ribonucleotide binding;5.13383562334274e-13!GO:0006974;response to DNA damage stimulus;7.31789188420092e-13!GO:0030163;protein catabolic process;9.16380120064769e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.3441322648869e-12!GO:0042773;ATP synthesis coupled electron transport;1.3441322648869e-12!GO:0009055;electron carrier activity;1.72543245226913e-12!GO:0030554;adenyl nucleotide binding;1.74761881176412e-12!GO:0005694;chromosome;1.8087919900125e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.82858677027491e-12!GO:0044427;chromosomal part;1.95283518121851e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.08495792643812e-12!GO:0045271;respiratory chain complex I;2.08495792643812e-12!GO:0005747;mitochondrial respiratory chain complex I;2.08495792643812e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.62164554750596e-12!GO:0042254;ribosome biogenesis and assembly;7.77893847743841e-12!GO:0031965;nuclear membrane;1.45774262781771e-11!GO:0008135;translation factor activity, nucleic acid binding;1.81701053932555e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.81701053932555e-11!GO:0000375;RNA splicing, via transesterification reactions;1.81701053932555e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.81701053932555e-11!GO:0009259;ribonucleotide metabolic process;2.12154840053074e-11!GO:0006399;tRNA metabolic process;2.12158478295806e-11!GO:0042981;regulation of apoptosis;2.84730129315087e-11!GO:0043067;regulation of programmed cell death;3.16910482810649e-11!GO:0048193;Golgi vesicle transport;3.80208697978144e-11!GO:0016740;transferase activity;6.38544868911434e-11!GO:0016192;vesicle-mediated transport;7.75746097171549e-11!GO:0006163;purine nucleotide metabolic process;8.24218785252622e-11!GO:0043687;post-translational protein modification;1.32935184514419e-10!GO:0000279;M phase;1.67683228586311e-10!GO:0007005;mitochondrion organization and biogenesis;1.76577776237624e-10!GO:0051301;cell division;2.20716944117993e-10!GO:0009056;catabolic process;2.21035548318261e-10!GO:0009150;purine ribonucleotide metabolic process;2.33352209405942e-10!GO:0051276;chromosome organization and biogenesis;2.57806174533171e-10!GO:0051188;cofactor biosynthetic process;2.79094580133298e-10!GO:0006281;DNA repair;3.14037042317481e-10!GO:0006260;DNA replication;3.65171188013443e-10!GO:0044453;nuclear membrane part;4.09427243860219e-10!GO:0009260;ribonucleotide biosynthetic process;4.51285444144091e-10!GO:0006461;protein complex assembly;4.67375945716572e-10!GO:0009719;response to endogenous stimulus;5.59160433621212e-10!GO:0006913;nucleocytoplasmic transport;6.0936561623628e-10!GO:0006164;purine nucleotide biosynthetic process;6.15494390956886e-10!GO:0006413;translational initiation;7.85261011586529e-10!GO:0051169;nuclear transport;1.40153388289401e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.5880671691767e-09!GO:0006446;regulation of translational initiation;1.62418241859395e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.7067637369674e-09!GO:0000785;chromatin;1.95244134723738e-09!GO:0009199;ribonucleoside triphosphate metabolic process;2.0252599250227e-09!GO:0009141;nucleoside triphosphate metabolic process;2.10348751992977e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;2.10348751992977e-09!GO:0005768;endosome;3.26636022350902e-09!GO:0003743;translation initiation factor activity;4.34341723389311e-09!GO:0042623;ATPase activity, coupled;4.34341723389311e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.44691722940313e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.44691722940313e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.44691722940313e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.44691722940313e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.44691722940313e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.65450094777166e-09!GO:0051726;regulation of cell cycle;5.42708847464912e-09!GO:0000074;regulation of progression through cell cycle;6.10485161085435e-09!GO:0065002;intracellular protein transport across a membrane;6.71753398389213e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;7.41885467635029e-09!GO:0003712;transcription cofactor activity;7.55324853045754e-09!GO:0005793;ER-Golgi intermediate compartment;7.62162349999285e-09!GO:0006323;DNA packaging;7.94190004297788e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.30071434608289e-09!GO:0043038;amino acid activation;9.41700703261837e-09!GO:0006418;tRNA aminoacylation for protein translation;9.41700703261837e-09!GO:0043039;tRNA aminoacylation;9.41700703261837e-09!GO:0005643;nuclear pore;1.02600066513705e-08!GO:0008639;small protein conjugating enzyme activity;1.03700170468627e-08!GO:0065004;protein-DNA complex assembly;1.26212406382812e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.31712503529232e-08!GO:0009060;aerobic respiration;1.68502403835296e-08!GO:0016887;ATPase activity;1.9308594553144e-08!GO:0004842;ubiquitin-protein ligase activity;2.02605209545006e-08!GO:0003676;nucleic acid binding;2.23762975304242e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.25330238002388e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.25330238002388e-08!GO:0017038;protein import;2.59221132968899e-08!GO:0019787;small conjugating protein ligase activity;3.36303572788591e-08!GO:0009108;coenzyme biosynthetic process;3.39970862552715e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.0149508832702e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.0149508832702e-08!GO:0043069;negative regulation of programmed cell death;5.06195923672264e-08!GO:0045333;cellular respiration;5.35081924954152e-08!GO:0006333;chromatin assembly or disassembly;6.13672739307252e-08!GO:0006364;rRNA processing;6.3114002447055e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.55993430070895e-08!GO:0009117;nucleotide metabolic process;6.86221240915729e-08!GO:0015986;ATP synthesis coupled proton transport;7.15977115800024e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.15977115800024e-08!GO:0051246;regulation of protein metabolic process;7.85773317847966e-08!GO:0006334;nucleosome assembly;8.84742447004637e-08!GO:0048523;negative regulation of cellular process;8.84925999630125e-08!GO:0016787;hydrolase activity;9.88593538288636e-08!GO:0016604;nuclear body;9.88967680978133e-08!GO:0043066;negative regulation of apoptosis;1.02033056731027e-07!GO:0016491;oxidoreductase activity;1.06394700307308e-07!GO:0016072;rRNA metabolic process;1.08336635621556e-07!GO:0046034;ATP metabolic process;1.12778775256662e-07!GO:0016881;acid-amino acid ligase activity;1.22892638435004e-07!GO:0019829;cation-transporting ATPase activity;1.40054101732407e-07!GO:0003924;GTPase activity;1.77108028804788e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.77897257031481e-07!GO:0008565;protein transporter activity;1.86050254539261e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.69261783874224e-07!GO:0031497;chromatin assembly;2.69261783874224e-07!GO:0030120;vesicle coat;2.95404914468371e-07!GO:0030662;coated vesicle membrane;2.95404914468371e-07!GO:0008654;phospholipid biosynthetic process;2.98882138024022e-07!GO:0006916;anti-apoptosis;3.21555091479397e-07!GO:0015630;microtubule cytoskeleton;3.24101259576157e-07!GO:0048475;coated membrane;3.26674038472878e-07!GO:0030117;membrane coat;3.26674038472878e-07!GO:0006099;tricarboxylic acid cycle;3.32906713581635e-07!GO:0046356;acetyl-CoA catabolic process;3.32906713581635e-07!GO:0046930;pore complex;3.64043721881258e-07!GO:0006084;acetyl-CoA metabolic process;3.82668990796109e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.18449714699099e-07!GO:0044431;Golgi apparatus part;4.99187932239893e-07!GO:0016023;cytoplasmic membrane-bound vesicle;5.79596472904637e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.21480510995828e-07!GO:0006793;phosphorus metabolic process;7.25226865241741e-07!GO:0006796;phosphate metabolic process;7.25226865241741e-07!GO:0031988;membrane-bound vesicle;8.72162904679678e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.73158754551112e-07!GO:0016070;RNA metabolic process;1.23470305580739e-06!GO:0006754;ATP biosynthetic process;1.23470305580739e-06!GO:0006753;nucleoside phosphate metabolic process;1.23470305580739e-06!GO:0048519;negative regulation of biological process;1.30708015449254e-06!GO:0016779;nucleotidyltransferase activity;1.38173798980274e-06!GO:0044440;endosomal part;1.42604681217909e-06!GO:0010008;endosome membrane;1.42604681217909e-06!GO:0045259;proton-transporting ATP synthase complex;1.54602226197413e-06!GO:0006752;group transfer coenzyme metabolic process;1.94110236570714e-06!GO:0051187;cofactor catabolic process;2.1605079288076e-06!GO:0050657;nucleic acid transport;2.38275366267003e-06!GO:0051236;establishment of RNA localization;2.38275366267003e-06!GO:0050658;RNA transport;2.38275366267003e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.427258813093e-06!GO:0008610;lipid biosynthetic process;2.55381848127232e-06!GO:0006403;RNA localization;2.63778360863125e-06!GO:0004386;helicase activity;2.94527625458218e-06!GO:0005762;mitochondrial large ribosomal subunit;3.89874088233554e-06!GO:0000315;organellar large ribosomal subunit;3.89874088233554e-06!GO:0007010;cytoskeleton organization and biogenesis;4.09235855741512e-06!GO:0004298;threonine endopeptidase activity;4.140449262543e-06!GO:0009109;coenzyme catabolic process;4.20976216051911e-06!GO:0016126;sterol biosynthetic process;4.33465134969888e-06!GO:0006888;ER to Golgi vesicle-mediated transport;4.60287273741069e-06!GO:0005773;vacuole;5.59553743546924e-06!GO:0032446;protein modification by small protein conjugation;7.1827550163951e-06!GO:0031410;cytoplasmic vesicle;8.73545140152336e-06!GO:0005770;late endosome;8.75393715720116e-06!GO:0031982;vesicle;9.14582274274521e-06!GO:0042802;identical protein binding;9.17150977708146e-06!GO:0016567;protein ubiquitination;9.81904868475667e-06!GO:0006082;organic acid metabolic process;1.0256091741716e-05!GO:0043623;cellular protein complex assembly;1.07874469193272e-05!GO:0051170;nuclear import;1.11438645411026e-05!GO:0019752;carboxylic acid metabolic process;1.2057790341247e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.22283468333479e-05!GO:0016607;nuclear speck;1.36025174177596e-05!GO:0008026;ATP-dependent helicase activity;1.43581285956249e-05!GO:0000314;organellar small ribosomal subunit;1.44606336555171e-05!GO:0005763;mitochondrial small ribosomal subunit;1.44606336555171e-05!GO:0016853;isomerase activity;1.51100790836184e-05!GO:0006366;transcription from RNA polymerase II promoter;1.51495264783033e-05!GO:0031252;leading edge;1.82025538907043e-05!GO:0006695;cholesterol biosynthetic process;1.95583344648157e-05!GO:0005525;GTP binding;1.9925086623386e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.00396212275828e-05!GO:0045454;cell redox homeostasis;2.01699595534689e-05!GO:0016310;phosphorylation;2.08934371274627e-05!GO:0000139;Golgi membrane;2.11202106681763e-05!GO:0006606;protein import into nucleus;2.28977620541764e-05!GO:0003697;single-stranded DNA binding;2.57334555062324e-05!GO:0007243;protein kinase cascade;2.64032858478991e-05!GO:0051329;interphase of mitotic cell cycle;3.59428092590856e-05!GO:0016563;transcription activator activity;3.59428092590856e-05!GO:0000323;lytic vacuole;3.73701096570528e-05!GO:0005764;lysosome;3.73701096570528e-05!GO:0008632;apoptotic program;3.87091341835989e-05!GO:0051325;interphase;4.04840444654982e-05!GO:0005788;endoplasmic reticulum lumen;4.04840444654982e-05!GO:0006839;mitochondrial transport;4.46849617111239e-05!GO:0051028;mRNA transport;4.85079605474126e-05!GO:0000245;spliceosome assembly;5.26522248635316e-05!GO:0019899;enzyme binding;5.4997950969192e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.59037915677001e-05!GO:0048522;positive regulation of cellular process;7.9796161626637e-05!GO:0005667;transcription factor complex;8.07654465643609e-05!GO:0046474;glycerophospholipid biosynthetic process;8.33585847639034e-05!GO:0048468;cell development;8.40110672813894e-05!GO:0051427;hormone receptor binding;8.54437416324902e-05!GO:0005819;spindle;8.7430922418603e-05!GO:0015980;energy derivation by oxidation of organic compounds;8.80139346869753e-05!GO:0030029;actin filament-based process;9.59894940795972e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000103364081916174!GO:0046467;membrane lipid biosynthetic process;0.000116665909255797!GO:0006613;cotranslational protein targeting to membrane;0.000122565603683261!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000125428098046985!GO:0003899;DNA-directed RNA polymerase activity;0.000132613000118959!GO:0003714;transcription corepressor activity;0.000135131362272552!GO:0044262;cellular carbohydrate metabolic process;0.000142776370825329!GO:0030118;clathrin coat;0.000142776370825329!GO:0005798;Golgi-associated vesicle;0.000144837268059312!GO:0000786;nucleosome;0.000145456325096868!GO:0005905;coated pit;0.000147347536549525!GO:0016568;chromatin modification;0.000161644001062041!GO:0043065;positive regulation of apoptosis;0.000165554460643239!GO:0006626;protein targeting to mitochondrion;0.000166719854885095!GO:0035257;nuclear hormone receptor binding;0.000174773967060391!GO:0009165;nucleotide biosynthetic process;0.000179420051386962!GO:0006091;generation of precursor metabolites and energy;0.000180977233609561!GO:0007264;small GTPase mediated signal transduction;0.000186047169973038!GO:0016044;membrane organization and biogenesis;0.000191721112431792!GO:0003713;transcription coactivator activity;0.000191944148400461!GO:0043681;protein import into mitochondrion;0.000192199316789285!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000208691211590716!GO:0048471;perinuclear region of cytoplasm;0.000224617843348168!GO:0008092;cytoskeletal protein binding;0.000225365286162811!GO:0065009;regulation of a molecular function;0.000235341956031959!GO:0043566;structure-specific DNA binding;0.000241936957773028!GO:0050794;regulation of cellular process;0.000246458750575775!GO:0043068;positive regulation of programmed cell death;0.000246783999719512!GO:0032561;guanyl ribonucleotide binding;0.00026726279987721!GO:0019001;guanyl nucleotide binding;0.00026726279987721!GO:0030867;rough endoplasmic reticulum membrane;0.000267346871272618!GO:0006520;amino acid metabolic process;0.000272811831666543!GO:0030176;integral to endoplasmic reticulum membrane;0.000311299316343042!GO:0031968;organelle outer membrane;0.00033858201873123!GO:0008033;tRNA processing;0.000343025091857539!GO:0005874;microtubule;0.000374226967648609!GO:0008637;apoptotic mitochondrial changes;0.000388743599646778!GO:0000151;ubiquitin ligase complex;0.000393025134404195!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000396597987429541!GO:0008250;oligosaccharyl transferase complex;0.000400513896690221!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.000426463608484159!GO:0005769;early endosome;0.000478518824112913!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000487200203559309!GO:0033116;ER-Golgi intermediate compartment membrane;0.00050157085304014!GO:0019867;outer membrane;0.000551451076935777!GO:0003724;RNA helicase activity;0.000551771599169469!GO:0007006;mitochondrial membrane organization and biogenesis;0.000553676678281506!GO:0005791;rough endoplasmic reticulum;0.00056462808240482!GO:0030133;transport vesicle;0.000593729619175869!GO:0005741;mitochondrial outer membrane;0.000612676534171953!GO:0009967;positive regulation of signal transduction;0.000624047406321461!GO:0043021;ribonucleoprotein binding;0.00062847890920622!GO:0045786;negative regulation of progression through cell cycle;0.000652006515516447!GO:0006261;DNA-dependent DNA replication;0.00065245570948178!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000666573772545661!GO:0030658;transport vesicle membrane;0.000672815459050949!GO:0051920;peroxiredoxin activity;0.000679285332228587!GO:0005885;Arp2/3 protein complex;0.000733476403203816!GO:0007088;regulation of mitosis;0.00077898385186475!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000792692650840287!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000868134635328833!GO:0005048;signal sequence binding;0.000895170657759448!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000947640973035082!GO:0015399;primary active transmembrane transporter activity;0.000947640973035082!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000965735336547147!GO:0007051;spindle organization and biogenesis;0.00102147195552!GO:0044452;nucleolar part;0.00111003849613467!GO:0005657;replication fork;0.00120107944974631!GO:0015992;proton transport;0.0012847827275703!GO:0001836;release of cytochrome c from mitochondria;0.0013789085776822!GO:0051789;response to protein stimulus;0.00140375978500798!GO:0006986;response to unfolded protein;0.00140375978500798!GO:0046489;phosphoinositide biosynthetic process;0.00144434893645057!GO:0005815;microtubule organizing center;0.00145195721212438!GO:0018196;peptidyl-asparagine modification;0.00152458853169524!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00152458853169524!GO:0005684;U2-dependent spliceosome;0.00155422121183804!GO:0008094;DNA-dependent ATPase activity;0.00161667069167629!GO:0006401;RNA catabolic process;0.001622952933929!GO:0031324;negative regulation of cellular metabolic process;0.00166122051426181!GO:0006818;hydrogen transport;0.00172747296134649!GO:0005813;centrosome;0.00174819839032725!GO:0006650;glycerophospholipid metabolic process;0.00176625805450576!GO:0051168;nuclear export;0.00176625805450576!GO:0050662;coenzyme binding;0.00177427017053025!GO:0030125;clathrin vesicle coat;0.00178074227044736!GO:0030665;clathrin coated vesicle membrane;0.00178074227044736!GO:0030119;AP-type membrane coat adaptor complex;0.00179921493497361!GO:0046483;heterocycle metabolic process;0.00186499258903496!GO:0006612;protein targeting to membrane;0.00190970901246983!GO:0004576;oligosaccharyl transferase activity;0.00200010845973297!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00221345611276295!GO:0031902;late endosome membrane;0.00228073094538618!GO:0019843;rRNA binding;0.00243566215986957!GO:0030660;Golgi-associated vesicle membrane;0.00245277860953473!GO:0016859;cis-trans isomerase activity;0.00245690317564843!GO:0001726;ruffle;0.00247971365100212!GO:0006220;pyrimidine nucleotide metabolic process;0.00250856417616149!GO:0008186;RNA-dependent ATPase activity;0.00251551282589844!GO:0043281;regulation of caspase activity;0.00256238988269297!GO:0006402;mRNA catabolic process;0.00256978798570523!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00261962399879664!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00261962399879664!GO:0043488;regulation of mRNA stability;0.00262376571329673!GO:0043487;regulation of RNA stability;0.00262376571329673!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00263456632176665!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00263456632176665!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00263456632176665!GO:0030131;clathrin adaptor complex;0.00263658736442001!GO:0009892;negative regulation of metabolic process;0.00278354043602505!GO:0030659;cytoplasmic vesicle membrane;0.00287644551380419!GO:0006643;membrane lipid metabolic process;0.00314485350398715!GO:0048518;positive regulation of biological process;0.00314485350398715!GO:0016564;transcription repressor activity;0.00317189460764251!GO:0030132;clathrin coat of coated pit;0.00331573139435376!GO:0000096;sulfur amino acid metabolic process;0.00334797664263155!GO:0035258;steroid hormone receptor binding;0.00341720007678162!GO:0032508;DNA duplex unwinding;0.00342852645514615!GO:0032392;DNA geometric change;0.00342852645514615!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00346974955867178!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00359847002172715!GO:0030880;RNA polymerase complex;0.00359847002172715!GO:0003684;damaged DNA binding;0.00376731455499676!GO:0051252;regulation of RNA metabolic process;0.00386167460065283!GO:0006414;translational elongation;0.00395804191365074!GO:0051287;NAD binding;0.00405971729153291!GO:0016272;prefoldin complex;0.00415054969219051!GO:0006979;response to oxidative stress;0.00432837279615675!GO:0000775;chromosome, pericentric region;0.00434435049387587!GO:0006595;polyamine metabolic process;0.00448033095995633!GO:0048487;beta-tubulin binding;0.00456811558811995!GO:0031072;heat shock protein binding;0.00469833003449166!GO:0005774;vacuolar membrane;0.00485709871906971!GO:0051540;metal cluster binding;0.00498623227836206!GO:0051536;iron-sulfur cluster binding;0.00498623227836206!GO:0006950;response to stress;0.00511784280454426!GO:0017166;vinculin binding;0.00517201068918362!GO:0004177;aminopeptidase activity;0.005173255361932!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00527312395626634!GO:0016301;kinase activity;0.00534128519701282!GO:0006383;transcription from RNA polymerase III promoter;0.00538788561221988!GO:0009112;nucleobase metabolic process;0.00541003974119754!GO:0006917;induction of apoptosis;0.00551159482370435!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00562576667215225!GO:0044433;cytoplasmic vesicle part;0.00576940135397564!GO:0000075;cell cycle checkpoint;0.00580075785472148!GO:0043492;ATPase activity, coupled to movement of substances;0.00601468892924814!GO:0004674;protein serine/threonine kinase activity;0.00607408079937305!GO:0051087;chaperone binding;0.0061354603081506!GO:0005996;monosaccharide metabolic process;0.0061758356795955!GO:0004004;ATP-dependent RNA helicase activity;0.00621255494445713!GO:0048037;cofactor binding;0.0062393973371785!GO:0008047;enzyme activator activity;0.00640460717133838!GO:0016741;transferase activity, transferring one-carbon groups;0.00650377070820799!GO:0044255;cellular lipid metabolic process;0.00661720601162286!GO:0006417;regulation of translation;0.00675379740888499!GO:0000049;tRNA binding;0.00682469781263322!GO:0004680;casein kinase activity;0.0068664955415873!GO:0006778;porphyrin metabolic process;0.00698098374504875!GO:0033013;tetrapyrrole metabolic process;0.00698098374504875!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00711142374735792!GO:0016363;nuclear matrix;0.00713105013194229!GO:0009116;nucleoside metabolic process;0.00715497071104769!GO:0008168;methyltransferase activity;0.00717736559943815!GO:0016049;cell growth;0.00719843664207588!GO:0006268;DNA unwinding during replication;0.00731347042361811!GO:0043154;negative regulation of caspase activity;0.00744273983026178!GO:0012502;induction of programmed cell death;0.00746227817046329!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00746912409849421!GO:0019318;hexose metabolic process;0.00747715961511338!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0075756405471826!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00764279374457488!GO:0000428;DNA-directed RNA polymerase complex;0.00764279374457488!GO:0006007;glucose catabolic process;0.00788941019457935!GO:0008361;regulation of cell size;0.00791567332605464!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00799623023107376!GO:0006644;phospholipid metabolic process;0.00813899637288498!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00814249607936699!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00833130345921321!GO:0016125;sterol metabolic process;0.00913682018037724!GO:0006519;amino acid and derivative metabolic process;0.00913682018037724!GO:0008139;nuclear localization sequence binding;0.00928725025076328!GO:0006611;protein export from nucleus;0.00938839907080441!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00954902794264922!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00969827058282027!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00975519624229992!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00978701001760041!GO:0015002;heme-copper terminal oxidase activity;0.00978701001760041!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00978701001760041!GO:0004129;cytochrome-c oxidase activity;0.00978701001760041!GO:0019206;nucleoside kinase activity;0.00978711622770333!GO:0006807;nitrogen compound metabolic process;0.0100460699955897!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.010190647440594!GO:0006066;alcohol metabolic process;0.0102262646394103!GO:0045893;positive regulation of transcription, DNA-dependent;0.0103270296838356!GO:0001558;regulation of cell growth;0.0103403655691208!GO:0045941;positive regulation of transcription;0.0103789067224082!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.010573409370508!GO:0000059;protein import into nucleus, docking;0.0106039690683541!GO:0030134;ER to Golgi transport vesicle;0.0107262382858259!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.010806934763969!GO:0030521;androgen receptor signaling pathway;0.0111023079678242!GO:0050790;regulation of catalytic activity;0.0117108111009608!GO:0006749;glutathione metabolic process;0.0117904316366994!GO:0048500;signal recognition particle;0.0120301339900305!GO:0006740;NADPH regeneration;0.0123017959640689!GO:0006098;pentose-phosphate shunt;0.0123017959640689!GO:0007242;intracellular signaling cascade;0.0125841571997684!GO:0044437;vacuolar part;0.0125899369580224!GO:0006497;protein amino acid lipidation;0.0131885418291431!GO:0033673;negative regulation of kinase activity;0.0134066868487799!GO:0006469;negative regulation of protein kinase activity;0.0134066868487799!GO:0005758;mitochondrial intermembrane space;0.0136082521149299!GO:0051128;regulation of cellular component organization and biogenesis;0.0136489282058243!GO:0042168;heme metabolic process;0.013659856151865!GO:0008652;amino acid biosynthetic process;0.0141333890201425!GO:0001666;response to hypoxia;0.0141724747228875!GO:0003779;actin binding;0.0143073676816979!GO:0005869;dynactin complex;0.0143307592642591!GO:0006633;fatty acid biosynthetic process;0.0143307592642591!GO:0003729;mRNA binding;0.0146536976380949!GO:0007017;microtubule-based process;0.0147993797021628!GO:0005765;lysosomal membrane;0.0150886362836008!GO:0043284;biopolymer biosynthetic process;0.0151134513743057!GO:0030433;ER-associated protein catabolic process;0.0151859097768796!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0151859097768796!GO:0012506;vesicle membrane;0.0153960303783003!GO:0006509;membrane protein ectodomain proteolysis;0.0155220453399676!GO:0033619;membrane protein proteolysis;0.0155220453399676!GO:0006506;GPI anchor biosynthetic process;0.0158311959535279!GO:0006779;porphyrin biosynthetic process;0.0158311959535279!GO:0033014;tetrapyrrole biosynthetic process;0.0158311959535279!GO:0008538;proteasome activator activity;0.0162648726323771!GO:0003678;DNA helicase activity;0.0162648726323771!GO:0030027;lamellipodium;0.0165675248662956!GO:0007021;tubulin folding;0.0166861262910669!GO:0051348;negative regulation of transferase activity;0.0168082242981597!GO:0022890;inorganic cation transmembrane transporter activity;0.0168082242981597!GO:0006733;oxidoreduction coenzyme metabolic process;0.0168366511824934!GO:0030384;phosphoinositide metabolic process;0.0168440113491!GO:0051539;4 iron, 4 sulfur cluster binding;0.0169307464812153!GO:0051101;regulation of DNA binding;0.0169961145366347!GO:0050789;regulation of biological process;0.0174257271987682!GO:0046822;regulation of nucleocytoplasmic transport;0.0174461116579076!GO:0030127;COPII vesicle coat;0.0174697010152341!GO:0012507;ER to Golgi transport vesicle membrane;0.0174697010152341!GO:0016791;phosphoric monoester hydrolase activity;0.0174697010152341!GO:0006352;transcription initiation;0.0177130408488538!GO:0030145;manganese ion binding;0.0178284075279499!GO:0051098;regulation of binding;0.0179049050562276!GO:0032594;protein transport within lipid bilayer;0.0179194394828659!GO:0032907;transforming growth factor-beta3 production;0.0179194394828659!GO:0032596;protein transport into lipid raft;0.0179194394828659!GO:0032910;regulation of transforming growth factor-beta3 production;0.0179194394828659!GO:0032595;B cell receptor transport within lipid bilayer;0.0179194394828659!GO:0033606;chemokine receptor transport within lipid bilayer;0.0179194394828659!GO:0032600;chemokine receptor transport out of lipid raft;0.0179194394828659!GO:0032599;protein transport out of lipid raft;0.0179194394828659!GO:0032597;B cell receptor transport into lipid raft;0.0179194394828659!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0179194394828659!GO:0009119;ribonucleoside metabolic process;0.0182976459123099!GO:0005975;carbohydrate metabolic process;0.0184774694613528!GO:0006891;intra-Golgi vesicle-mediated transport;0.0186191078681998!GO:0008629;induction of apoptosis by intracellular signals;0.0187347404310272!GO:0016311;dephosphorylation;0.0189691756683433!GO:0005862;muscle thin filament tropomyosin;0.0190868391132391!GO:0009308;amine metabolic process;0.0194922496465916!GO:0031529;ruffle organization and biogenesis;0.0195529858591906!GO:0016860;intramolecular oxidoreductase activity;0.0195736553367331!GO:0006302;double-strand break repair;0.0202038018391774!GO:0008312;7S RNA binding;0.0202241181415481!GO:0031970;organelle envelope lumen;0.0206158590885988!GO:0031326;regulation of cellular biosynthetic process;0.0209874725542613!GO:0006221;pyrimidine nucleotide biosynthetic process;0.0214009838650512!GO:0030031;cell projection biogenesis;0.0215448524952888!GO:0006767;water-soluble vitamin metabolic process;0.0215883406540471!GO:0009451;RNA modification;0.0217253145271554!GO:0000082;G1/S transition of mitotic cell cycle;0.022416010068143!GO:0031124;mRNA 3'-end processing;0.022421523475623!GO:0005938;cell cortex;0.0230252336072644!GO:0005832;chaperonin-containing T-complex;0.0232531060358251!GO:0003711;transcription elongation regulator activity;0.0233995826412733!GO:0006289;nucleotide-excision repair;0.023609881032147!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0238976962265208!GO:0045047;protein targeting to ER;0.0238976962265208!GO:0000209;protein polyubiquitination;0.0241287040458277!GO:0006458;'de novo' protein folding;0.0241287040458277!GO:0051084;'de novo' posttranslational protein folding;0.0241287040458277!GO:0016197;endosome transport;0.0241847413981013!GO:0006518;peptide metabolic process;0.0244394383077211!GO:0006505;GPI anchor metabolic process;0.0245673104006693!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0246905382582409!GO:0000086;G2/M transition of mitotic cell cycle;0.0248885899284546!GO:0006984;ER-nuclear signaling pathway;0.0250746427920584!GO:0046365;monosaccharide catabolic process;0.0254047784094028!GO:0043022;ribosome binding;0.0254502783794944!GO:0008287;protein serine/threonine phosphatase complex;0.0254502783794944!GO:0007346;regulation of progression through mitotic cell cycle;0.0254502783794944!GO:0006144;purine base metabolic process;0.0258512588773976!GO:0000287;magnesium ion binding;0.0259793311521836!GO:0005637;nuclear inner membrane;0.0259793311521836!GO:0042158;lipoprotein biosynthetic process;0.0260150872305239!GO:0009889;regulation of biosynthetic process;0.0264029988966974!GO:0051052;regulation of DNA metabolic process;0.0264171613959277!GO:0006672;ceramide metabolic process;0.0264316400498716!GO:0006284;base-excision repair;0.0266615179810732!GO:0046394;carboxylic acid biosynthetic process;0.0268267690400882!GO:0016053;organic acid biosynthetic process;0.0268267690400882!GO:0004448;isocitrate dehydrogenase activity;0.0270433759633825!GO:0051336;regulation of hydrolase activity;0.0270907243542362!GO:0016408;C-acyltransferase activity;0.0276112349531669!GO:0046519;sphingoid metabolic process;0.0276112349531669!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0279918822885899!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0281988521504691!GO:0033559;unsaturated fatty acid metabolic process;0.0289776879260377!GO:0006636;unsaturated fatty acid biosynthetic process;0.0289776879260377!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0291834860629119!GO:0000339;RNA cap binding;0.0291834860629119!GO:0030663;COPI coated vesicle membrane;0.0291834860629119!GO:0030126;COPI vesicle coat;0.0291834860629119!GO:0043189;H4/H2A histone acetyltransferase complex;0.0291897981450892!GO:0009303;rRNA transcription;0.0295709938286857!GO:0042393;histone binding;0.0295709938286857!GO:0006783;heme biosynthetic process;0.0298269670294674!GO:0030508;thiol-disulfide exchange intermediate activity;0.0298269670294674!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0299355216868938!GO:0007265;Ras protein signal transduction;0.0303717412915601!GO:0043433;negative regulation of transcription factor activity;0.0304624331775187!GO:0009124;nucleoside monophosphate biosynthetic process;0.0304624331775187!GO:0009123;nucleoside monophosphate metabolic process;0.0304624331775187!GO:0031301;integral to organelle membrane;0.0308846442563597!GO:0000305;response to oxygen radical;0.0308846442563597!GO:0006368;RNA elongation from RNA polymerase II promoter;0.030891280993819!GO:0009262;deoxyribonucleotide metabolic process;0.030903058269466!GO:0035267;NuA4 histone acetyltransferase complex;0.0312080842567049!GO:0051881;regulation of mitochondrial membrane potential;0.0315605160923803!GO:0045334;clathrin-coated endocytic vesicle;0.0322225283080003!GO:0003756;protein disulfide isomerase activity;0.0322756472917787!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0322756472917787!GO:0015631;tubulin binding;0.0324665148196251!GO:0030503;regulation of cell redox homeostasis;0.0331623891725652!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0333739991753868!GO:0045039;protein import into mitochondrial inner membrane;0.0333739991753868!GO:0035035;histone acetyltransferase binding;0.0335571685747262!GO:0000303;response to superoxide;0.0336364508034843!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0340571032836963!GO:0010257;NADH dehydrogenase complex assembly;0.0340571032836963!GO:0033108;mitochondrial respiratory chain complex assembly;0.0340571032836963!GO:0050681;androgen receptor binding;0.0344935686123733!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0348094447275469!GO:0006919;caspase activation;0.0359710698330288!GO:0008601;protein phosphatase type 2A regulator activity;0.0361619237914931!GO:0000792;heterochromatin;0.0364603612570618!GO:0008426;protein kinase C inhibitor activity;0.0366170079214784!GO:0046164;alcohol catabolic process;0.0367262784445696!GO:0019320;hexose catabolic process;0.0367730297529534!GO:0051059;NF-kappaB binding;0.0370782992821121!GO:0008415;acyltransferase activity;0.0371597515125798!GO:0016481;negative regulation of transcription;0.0371747568981894!GO:0030496;midbody;0.037174842122563!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.037174842122563!GO:0008299;isoprenoid biosynthetic process;0.0382388761759213!GO:0006739;NADP metabolic process;0.0383509389655288!GO:0007052;mitotic spindle organization and biogenesis;0.0387239931601722!GO:0000097;sulfur amino acid biosynthetic process;0.039411756605415!GO:0042769;DNA damage response, detection of DNA damage;0.0396073477455483!GO:0006275;regulation of DNA replication;0.0412019493598932!GO:0040008;regulation of growth;0.0412661203803606!GO:0032984;macromolecular complex disassembly;0.0419319247974939!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0419319247974939!GO:0006629;lipid metabolic process;0.0420705569360213!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0421637882742828!GO:0015036;disulfide oxidoreductase activity;0.0421637882742828!GO:0008243;plasminogen activator activity;0.0422352684431744!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0423622407443739!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0424362343249164!GO:0008537;proteasome activator complex;0.0425449472151186!GO:0048144;fibroblast proliferation;0.0428730028069734!GO:0048145;regulation of fibroblast proliferation;0.0428730028069734!GO:0030911;TPR domain binding;0.0428730028069734!GO:0006730;one-carbon compound metabolic process;0.0431602572454993!GO:0043624;cellular protein complex disassembly;0.0437972513825591!GO:0030137;COPI-coated vesicle;0.0439091890928349!GO:0046128;purine ribonucleoside metabolic process;0.0439091890928349!GO:0042278;purine nucleoside metabolic process;0.0439091890928349!GO:0016746;transferase activity, transferring acyl groups;0.0445651647252846!GO:0009218;pyrimidine ribonucleotide metabolic process;0.0445651647252846!GO:0043414;biopolymer methylation;0.0447034657160541!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0451125793840617!GO:0012510;trans-Golgi network transport vesicle membrane;0.0451125793840617!GO:0030140;trans-Golgi network transport vesicle;0.0454591193609208!GO:0006096;glycolysis;0.0459091875795253!GO:0043256;laminin complex;0.0459717131437966!GO:0031371;ubiquitin conjugating enzyme complex;0.0460827686940193!GO:0008283;cell proliferation;0.04664253028376!GO:0051090;regulation of transcription factor activity;0.0477534942694127!GO:0030913;paranodal junction assembly;0.0477770283639494!GO:0032288;myelin formation;0.0477770283639494!GO:0009166;nucleotide catabolic process;0.0479193454404684!GO:0005856;cytoskeleton;0.0483027183201977!GO:0008234;cysteine-type peptidase activity;0.0483466119034905!GO:0051085;chaperone cofactor-dependent protein folding;0.0483466119034905!GO:0004721;phosphoprotein phosphatase activity;0.0492940434404403!GO:0008625;induction of apoptosis via death domain receptors;0.0495325343210832!GO:0048146;positive regulation of fibroblast proliferation;0.049843026234328!GO:0003690;double-stranded DNA binding;0.0498631665986985 | |||
|sample_id=11515 | |sample_id=11515 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=ZEB1:1.89887899719;SNAI1..3:1.83032620745;MYOD1:1.71795880399;XCPE1{core}:1.71278791212;HNF1A:1.59039326191;ADNP_IRX_SIX_ZHX:1.58852351326;NKX2-3_NKX2-5:1.43597415401;LMO2:1.27577304918;ZNF148:1.15644575169;PBX1:1.14123927821;RXRA_VDR{dimer}:1.09607091065;SP1:1.02152117089;LHX3,4:0.974205926821;ESRRA:0.9668192794;bHLH_family:0.960848819856;PPARG:0.885595426349;TEAD1:0.818914016704;HOX{A5,B5}:0.781617279313;NFY{A,B,C}:0.742532346504;EBF1:0.739679632409;TBX4,5:0.724715600346;TEF:0.722961479197;TFCP2:0.713464077007;GFI1:0.709810639561;POU2F1..3:0.702497728637;HAND1,2:0.698751923888;VSX1,2:0.652771342414;TFDP1:0.560787341176;ZNF423:0.552453803101;FOXQ1:0.533255007711;GLI1..3:0.494567071336;E2F1..5:0.478268649506;ONECUT1,2:0.475538194127;LEF1_TCF7_TCF7L1,2:0.462911082332;GZF1:0.427753737334;ZIC1..3:0.417413856432;POU1F1:0.413118551519;PAX5:0.405360942266;NR5A1,2:0.398327234673;CDC5L:0.391342179536;TFAP2{A,C}:0.379401994126;NR3C1:0.378384368895;FOSL2:0.372594090215;NR6A1:0.354774094298;TBP:0.352569946072;SPZ1:0.324649840338;PRRX1,2:0.323631659403;FOS_FOS{B,L1}_JUN{B,D}:0.295017661844;TP53:0.287637846018;HIC1:0.283079074201;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.252888286012;GTF2A1,2:0.22340210708;CRX:0.205864208973;POU5F1:0.200665481381;TLX1..3_NFIC{dimer}:0.199602440659;HOX{A6,A7,B6,B7}:0.184228697983;BACH2:0.174937131163;NFE2:0.139231783849;STAT5{A,B}:0.136819917721;TFAP2B:0.130329211307;MTF1:0.119946771237;NKX3-2:0.118602362376;SOX{8,9,10}:0.105921036466;NANOG:0.0920925952641;NFKB1_REL_RELA:0.0829896224237;HNF4A_NR2F1,2:0.046765915311;JUN:0.0200472728039;NFE2L2:0.0188857362761;GFI1B:0.0176652235326;MYB:0.016361631449;PAX8:0.0108155601568;ALX1:0.0040668921688;IKZF1:0.00171464399155;NR1H4:-0.00890259746001;EP300:-0.0111440725352;HOXA9_MEIS1:-0.0160143681159;NFE2L1:-0.0184019218767;ESR1:-0.0483555837481;PDX1:-0.0495322407934;HBP1_HMGB_SSRP1_UBTF:-0.0519865129144;AR:-0.0579628687615;TFAP4:-0.0632111352144;PAX1,9:-0.0677070594011;PITX1..3:-0.0681680265177;MAZ:-0.0716014452419;OCT4_SOX2{dimer}:-0.0723589693231;ZFP161:-0.080305363544;ARID5B:-0.101025207952;ATF6:-0.104298238888;MEF2{A,B,C,D}:-0.106964673437;ZNF143:-0.1090348426;STAT2,4,6:-0.115334393186;CEBPA,B_DDIT3:-0.131650297432;FOXD3:-0.156803642423;RORA:-0.162266314261;GATA6:-0.175234154072;RREB1:-0.181122742423;RXR{A,B,G}:-0.18976911532;MED-1{core}:-0.208336852875;CUX2:-0.218488886825;PAX6:-0.223391806938;HLF:-0.236202633823;ZBTB6:-0.241312781659;ETS1,2:-0.250494028314;FOXM1:-0.255870982936;ELK1,4_GABP{A,B1}:-0.259709802753;MTE{core}:-0.26097269153;AIRE:-0.262104289639;MYBL2:-0.265268843876;FOXL1:-0.267481910337;NRF1:-0.276577154463;DBP:-0.283127421008;IRF7:-0.293738941598;GTF2I:-0.29524002306;POU3F1..4:-0.302994465006;NHLH1,2:-0.306592161713;SOX2:-0.322566323325;EN1,2:-0.329846520616;RFX1:-0.340586128988;NKX2-1,4:-0.34882090286;ALX4:-0.352224321064;REST:-0.359652269486;KLF4:-0.385044610084;T:-0.388956387064;NKX2-2,8:-0.39717754999;HES1:-0.421608128978;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.424003306887;SRF:-0.428571304514;NFIL3:-0.434915868101;SPIB:-0.436331277896;NKX6-1,2:-0.440141820098;ATF2:-0.446444694217;HIF1A:-0.461258996847;GCM1,2:-0.483492063119;NKX3-1:-0.491917070486;IRF1,2:-0.495699724943;RUNX1..3:-0.501160444438;UFEwm:-0.511895632242;TAL1_TCF{3,4,12}:-0.51632878188;BREu{core}:-0.536501849903;HOX{A4,D4}:-0.541492426827;PAX3,7:-0.548244768601;FOXA2:-0.552423960422;EGR1..3:-0.559118307125;HMX1:-0.562830691235;SPI1:-0.588685267821;FOX{F1,F2,J1}:-0.613751816548;ATF5_CREB3:-0.615018058035;XBP1:-0.619009695547;ELF1,2,4:-0.641274159633;PAX2:-0.645899885448;SOX17:-0.648433290921;FOXN1:-0.668098270235;PATZ1:-0.687973389285;SREBF1,2:-0.689458712276;RFX2..5_RFXANK_RFXAP:-0.700909343538;ATF4:-0.708153077933;YY1:-0.728867327242;STAT1,3:-0.738046346343;PRDM1:-0.743612615324;CDX1,2,4:-0.748282665185;FOX{I1,J2}:-0.757506758941;HSF1,2:-0.763859766552;NFATC1..3:-0.786373719986;FOXP1:-0.790793707881;ZNF238:-0.809180200112;IKZF2:-0.814839298683;MZF1:-0.864564876198;TGIF1:-0.875347898231;SOX5:-0.89593102704;POU6F1:-0.931181883187;DMAP1_NCOR{1,2}_SMARC:-0.948876092793;MAFB:-0.958745791937;AHR_ARNT_ARNT2:-0.963415462604;FOXO1,3,4:-0.975775120754;MYFfamily:-0.98582970235;FOX{D1,D2}:-0.986759396274;SMAD1..7,9:-0.989145459071;EVI1:-1.03233833174;CREB1:-1.04615095932;NFIX:-1.08180717007;TOPORS:-1.12535596929;ZBTB16:-1.13994250225;ZNF384:-1.21122843317;FOXP3:-1.23097343658;PAX4:-1.23119575683;TLX2:-1.24277204908;HMGA1,2:-1.27105345486;RBPJ:-1.2959834224;BPTF:-1.34837576801;NANOG{mouse}:-1.40845998372;GATA4:-1.54693050619 | |top_motifs=ZEB1:1.89887899719;SNAI1..3:1.83032620745;MYOD1:1.71795880399;XCPE1{core}:1.71278791212;HNF1A:1.59039326191;ADNP_IRX_SIX_ZHX:1.58852351326;NKX2-3_NKX2-5:1.43597415401;LMO2:1.27577304918;ZNF148:1.15644575169;PBX1:1.14123927821;RXRA_VDR{dimer}:1.09607091065;SP1:1.02152117089;LHX3,4:0.974205926821;ESRRA:0.9668192794;bHLH_family:0.960848819856;PPARG:0.885595426349;TEAD1:0.818914016704;HOX{A5,B5}:0.781617279313;NFY{A,B,C}:0.742532346504;EBF1:0.739679632409;TBX4,5:0.724715600346;TEF:0.722961479197;TFCP2:0.713464077007;GFI1:0.709810639561;POU2F1..3:0.702497728637;HAND1,2:0.698751923888;VSX1,2:0.652771342414;TFDP1:0.560787341176;ZNF423:0.552453803101;FOXQ1:0.533255007711;GLI1..3:0.494567071336;E2F1..5:0.478268649506;ONECUT1,2:0.475538194127;LEF1_TCF7_TCF7L1,2:0.462911082332;GZF1:0.427753737334;ZIC1..3:0.417413856432;POU1F1:0.413118551519;PAX5:0.405360942266;NR5A1,2:0.398327234673;CDC5L:0.391342179536;TFAP2{A,C}:0.379401994126;NR3C1:0.378384368895;FOSL2:0.372594090215;NR6A1:0.354774094298;TBP:0.352569946072;SPZ1:0.324649840338;PRRX1,2:0.323631659403;FOS_FOS{B,L1}_JUN{B,D}:0.295017661844;TP53:0.287637846018;HIC1:0.283079074201;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.252888286012;GTF2A1,2:0.22340210708;CRX:0.205864208973;POU5F1:0.200665481381;TLX1..3_NFIC{dimer}:0.199602440659;HOX{A6,A7,B6,B7}:0.184228697983;BACH2:0.174937131163;NFE2:0.139231783849;STAT5{A,B}:0.136819917721;TFAP2B:0.130329211307;MTF1:0.119946771237;NKX3-2:0.118602362376;SOX{8,9,10}:0.105921036466;NANOG:0.0920925952641;NFKB1_REL_RELA:0.0829896224237;HNF4A_NR2F1,2:0.046765915311;JUN:0.0200472728039;NFE2L2:0.0188857362761;GFI1B:0.0176652235326;MYB:0.016361631449;PAX8:0.0108155601568;ALX1:0.0040668921688;IKZF1:0.00171464399155;NR1H4:-0.00890259746001;EP300:-0.0111440725352;HOXA9_MEIS1:-0.0160143681159;NFE2L1:-0.0184019218767;ESR1:-0.0483555837481;PDX1:-0.0495322407934;HBP1_HMGB_SSRP1_UBTF:-0.0519865129144;AR:-0.0579628687615;TFAP4:-0.0632111352144;PAX1,9:-0.0677070594011;PITX1..3:-0.0681680265177;MAZ:-0.0716014452419;OCT4_SOX2{dimer}:-0.0723589693231;ZFP161:-0.080305363544;ARID5B:-0.101025207952;ATF6:-0.104298238888;MEF2{A,B,C,D}:-0.106964673437;ZNF143:-0.1090348426;STAT2,4,6:-0.115334393186;CEBPA,B_DDIT3:-0.131650297432;FOXD3:-0.156803642423;RORA:-0.162266314261;GATA6:-0.175234154072;RREB1:-0.181122742423;RXR{A,B,G}:-0.18976911532;MED-1{core}:-0.208336852875;CUX2:-0.218488886825;PAX6:-0.223391806938;HLF:-0.236202633823;ZBTB6:-0.241312781659;ETS1,2:-0.250494028314;FOXM1:-0.255870982936;ELK1,4_GABP{A,B1}:-0.259709802753;MTE{core}:-0.26097269153;AIRE:-0.262104289639;MYBL2:-0.265268843876;FOXL1:-0.267481910337;NRF1:-0.276577154463;DBP:-0.283127421008;IRF7:-0.293738941598;GTF2I:-0.29524002306;POU3F1..4:-0.302994465006;NHLH1,2:-0.306592161713;SOX2:-0.322566323325;EN1,2:-0.329846520616;RFX1:-0.340586128988;NKX2-1,4:-0.34882090286;ALX4:-0.352224321064;REST:-0.359652269486;KLF4:-0.385044610084;T:-0.388956387064;NKX2-2,8:-0.39717754999;HES1:-0.421608128978;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.424003306887;SRF:-0.428571304514;NFIL3:-0.434915868101;SPIB:-0.436331277896;NKX6-1,2:-0.440141820098;ATF2:-0.446444694217;HIF1A:-0.461258996847;GCM1,2:-0.483492063119;NKX3-1:-0.491917070486;IRF1,2:-0.495699724943;RUNX1..3:-0.501160444438;UFEwm:-0.511895632242;TAL1_TCF{3,4,12}:-0.51632878188;BREu{core}:-0.536501849903;HOX{A4,D4}:-0.541492426827;PAX3,7:-0.548244768601;FOXA2:-0.552423960422;EGR1..3:-0.559118307125;HMX1:-0.562830691235;SPI1:-0.588685267821;FOX{F1,F2,J1}:-0.613751816548;ATF5_CREB3:-0.615018058035;XBP1:-0.619009695547;ELF1,2,4:-0.641274159633;PAX2:-0.645899885448;SOX17:-0.648433290921;FOXN1:-0.668098270235;PATZ1:-0.687973389285;SREBF1,2:-0.689458712276;RFX2..5_RFXANK_RFXAP:-0.700909343538;ATF4:-0.708153077933;YY1:-0.728867327242;STAT1,3:-0.738046346343;PRDM1:-0.743612615324;CDX1,2,4:-0.748282665185;FOX{I1,J2}:-0.757506758941;HSF1,2:-0.763859766552;NFATC1..3:-0.786373719986;FOXP1:-0.790793707881;ZNF238:-0.809180200112;IKZF2:-0.814839298683;MZF1:-0.864564876198;TGIF1:-0.875347898231;SOX5:-0.89593102704;POU6F1:-0.931181883187;DMAP1_NCOR{1,2}_SMARC:-0.948876092793;MAFB:-0.958745791937;AHR_ARNT_ARNT2:-0.963415462604;FOXO1,3,4:-0.975775120754;MYFfamily:-0.98582970235;FOX{D1,D2}:-0.986759396274;SMAD1..7,9:-0.989145459071;EVI1:-1.03233833174;CREB1:-1.04615095932;NFIX:-1.08180717007;TOPORS:-1.12535596929;ZBTB16:-1.13994250225;ZNF384:-1.21122843317;FOXP3:-1.23097343658;PAX4:-1.23119575683;TLX2:-1.24277204908;HMGA1,2:-1.27105345486;RBPJ:-1.2959834224;BPTF:-1.34837576801;NANOG{mouse}:-1.40845998372;GATA4:-1.54693050619 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11515-119H3;search_select_hide=table117:FF:11515-119H3 | |||
}} | }} | ||
Latest revision as of 18:05, 4 June 2020
| Name: | Renal Proximal Tubular Epithelial Cell, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11330 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11330
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11330
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.528 |
| 10 | 10 | 0.122 |
| 100 | 100 | 0.285 |
| 101 | 101 | 0.00869 |
| 102 | 102 | 0.321 |
| 103 | 103 | 0.732 |
| 104 | 104 | 0.88 |
| 105 | 105 | 0.0996 |
| 106 | 106 | 0.169 |
| 107 | 107 | 0.0144 |
| 108 | 108 | 0.666 |
| 109 | 109 | 0.0556 |
| 11 | 11 | 0.518 |
| 110 | 110 | 0.541 |
| 111 | 111 | 0.972 |
| 112 | 112 | 0.508 |
| 113 | 113 | 0.115 |
| 114 | 114 | 0.0579 |
| 115 | 115 | 0.584 |
| 116 | 116 | 0.463 |
| 117 | 117 | 0.359 |
| 118 | 118 | 0.562 |
| 119 | 119 | 0.493 |
| 12 | 12 | 0.825 |
| 120 | 120 | 0.187 |
| 121 | 121 | 0.34 |
| 122 | 122 | 0.0179 |
| 123 | 123 | 0.0468 |
| 124 | 124 | 0.156 |
| 125 | 125 | 0.244 |
| 126 | 126 | 0.4 |
| 127 | 127 | 0.352 |
| 128 | 128 | 0.439 |
| 129 | 129 | 0.0372 |
| 13 | 13 | 0.152 |
| 130 | 130 | 0.322 |
| 131 | 131 | 0.0751 |
| 132 | 132 | 0.204 |
| 133 | 133 | 0.0185 |
| 134 | 134 | 0.55 |
| 135 | 135 | 0.327 |
| 136 | 136 | 0.076 |
| 137 | 137 | 0.283 |
| 138 | 138 | 0.209 |
| 139 | 139 | 0.102 |
| 14 | 14 | 0.388 |
| 140 | 140 | 0.468 |
| 141 | 141 | 0.541 |
| 142 | 142 | 0.805 |
| 143 | 143 | 0.569 |
| 144 | 144 | 0.316 |
| 145 | 145 | 0.485 |
| 146 | 146 | 0.0211 |
| 147 | 147 | 0.428 |
| 148 | 148 | 0.31 |
| 149 | 149 | 0.833 |
| 15 | 15 | 0.846 |
| 150 | 150 | 0.257 |
| 151 | 151 | 0.69 |
| 152 | 152 | 0.057 |
| 153 | 153 | 0.52 |
| 154 | 154 | 0.284 |
| 155 | 155 | 0.881 |
| 156 | 156 | 0.0216 |
| 157 | 157 | 0.955 |
| 158 | 158 | 0.303 |
| 159 | 159 | 0.516 |
| 16 | 16 | 0.245 |
| 160 | 160 | 0.171 |
| 161 | 161 | 0.705 |
| 162 | 162 | 0.138 |
| 163 | 163 | 0.495 |
| 164 | 164 | 0.3 |
| 165 | 165 | 0.441 |
| 166 | 166 | 0.537 |
| 167 | 167 | 0.315 |
| 168 | 168 | 0.812 |
| 169 | 169 | 0.288 |
| 17 | 17 | 0.422 |
| 18 | 18 | 0.958 |
| 19 | 19 | 0.972 |
| 2 | 2 | 0.267 |
| 20 | 20 | 0.932 |
| 21 | 21 | 0.337 |
| 22 | 22 | 0.419 |
| 23 | 23 | 0.38 |
| 24 | 24 | 0.455 |
| 25 | 25 | 0.866 |
| 26 | 26 | 0.309 |
| 27 | 27 | 0.292 |
| 28 | 28 | 0.92 |
| 29 | 29 | 0.76 |
| 3 | 3 | 0.367 |
| 30 | 30 | 0.0286 |
| 31 | 31 | 0.663 |
| 32 | 32 | 0.0457 |
| 33 | 33 | 0.0374 |
| 34 | 34 | 0.565 |
| 35 | 35 | 0.00706 |
| 36 | 36 | 0.904 |
| 37 | 37 | 0.736 |
| 38 | 38 | 0.394 |
| 39 | 39 | 0.242 |
| 4 | 4 | 0.17 |
| 40 | 40 | 0.0081 |
| 41 | 41 | 0.288 |
| 42 | 42 | 0.765 |
| 43 | 43 | 0.697 |
| 44 | 44 | 0.595 |
| 45 | 45 | 0.208 |
| 46 | 46 | 0.962 |
| 47 | 47 | 0.697 |
| 48 | 48 | 0.436 |
| 49 | 49 | 0.661 |
| 5 | 5 | 0.53 |
| 50 | 50 | 0.173 |
| 51 | 51 | 0.807 |
| 52 | 52 | 0.276 |
| 53 | 53 | 0.573 |
| 54 | 54 | 0.657 |
| 55 | 55 | 0.377 |
| 56 | 56 | 0.203 |
| 57 | 57 | 0.884 |
| 58 | 58 | 0.674 |
| 59 | 59 | 0.241 |
| 6 | 6 | 0.154 |
| 60 | 60 | 0.291 |
| 61 | 61 | 0.586 |
| 62 | 62 | 0.414 |
| 63 | 63 | 0.194 |
| 64 | 64 | 0.393 |
| 65 | 65 | 0.334 |
| 66 | 66 | 0.0331 |
| 67 | 67 | 0.657 |
| 68 | 68 | 0.588 |
| 69 | 69 | 0.443 |
| 7 | 7 | 0.406 |
| 70 | 70 | 0.0846 |
| 71 | 71 | 0.38 |
| 72 | 72 | 0.841 |
| 73 | 73 | 0.0785 |
| 74 | 74 | 0.198 |
| 75 | 75 | 0.615 |
| 76 | 76 | 0.0861 |
| 77 | 77 | 0.00637 |
| 78 | 78 | 0.642 |
| 79 | 79 | 0.0189 |
| 8 | 8 | 0.522 |
| 80 | 80 | 0.418 |
| 81 | 81 | 0.144 |
| 82 | 82 | 0.0873 |
| 83 | 83 | 0.982 |
| 84 | 84 | 0.649 |
| 85 | 85 | 0.28 |
| 86 | 86 | 0.458 |
| 87 | 87 | 0.0195 |
| 88 | 88 | 0.972 |
| 89 | 89 | 0.162 |
| 9 | 9 | 0.81 |
| 90 | 90 | 0.261 |
| 91 | 91 | 0.417 |
| 92 | 92 | 0.683 |
| 93 | 93 | 0.58 |
| 94 | 94 | 0.443 |
| 95 | 95 | 0.333 |
| 96 | 96 | 0.695 |
| 97 | 97 | 0.83 |
| 98 | 98 | 0.974 |
| 99 | 99 | 6.99081e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11330
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000155 human renal proximal tubular epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000255 (eukaryotic cell)
0000239 (brush border epithelial cell)
1000615 (kidney cortex tubule cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
0002306 (epithelial cell of proximal tubule)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0006853 (renal cortex tubule)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0007685 (region of nephron tubule)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0004134 (proximal tubule)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000155 (human renal proximal tubular epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
