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{{f5samples
{{f5samples
|id=FF:11676-122H2
|DRA_sample_Accession=CAGE@SAMD00005901
|name=Renal Proximal Tubular Epithelial Cell, donor3
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005901
|sample_id=11676
|accession_numbers=CAGE;DRX008439;DRR009311;DRZ000736;DRZ002121;DRZ012086;DRZ013471
|rna_tube_id=122H2
|accession_numbers_RNASeq=sRNA-Seq;DRX037075;DRR041441;DRZ007083
|rna_box=122
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
|rna_position=H2
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306
|sample_cell_lot=lot:3589
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=
|rna_catalog_number=SC4105
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=kidney
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=9.8
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=epithelial cell of kidney, proximal tubule
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10
|rna_concentration=1.38
|sample_note=
|profile_hcage=CNhs12120,LSID839,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10006,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000075,CL:0000144,CL:0000220,CL:0000222,CL:0000239,CL:0000255,CL:0000548,CL:0002078,CL:0002306,CL:0002321,CL:0002371,CL:0002518,CL:0002584,CL:1000494,CL:1000497,CL:1000507,CL:1000615
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000058,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000080,UBERON:0000083,UBERON:0000119,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000489,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001008,UBERON:0001062,UBERON:0001225,UBERON:0001231,UBERON:0001285,UBERON:0001851,UBERON:0002050,UBERON:0002100,UBERON:0002113,UBERON:0002120,UBERON:0002417,UBERON:0002532,UBERON:0002553,UBERON:0003060,UBERON:0003064,UBERON:0003074,UBERON:0003081,UBERON:0003103,UBERON:0003104,UBERON:0003220,UBERON:0003886,UBERON:0003887,UBERON:0003914,UBERON:0003918,UBERON:0004111,UBERON:0004120,UBERON:0004134,UBERON:0004211,UBERON:0004810,UBERON:0004819,UBERON:0004875,UBERON:0004876,UBERON:0005095,UBERON:0005103,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005291,UBERON:0005423,UBERON:0005721,UBERON:0005754,UBERON:0006553,UBERON:0006554,UBERON:0006555,UBERON:0006853,UBERON:0007684,UBERON:0007685,UBERON:0007687,UBERON:0009142,UBERON:0009201
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151,FF:0000155
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.03!106.79!PAX8;;chr17:46703687..46703740,-!p1@HOXB9!2.02!103.43!HOXB9;;chr17:36105042..36105060,-!p1@HNF1B!1.96!91.12!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!1.67!45.45!ELF3;;chr6:50786591..50786614,+!p1@TFAP2B!1.66!45.22!TFAP2B;;chr17:46682321..46682362,-!p1@HOXB6!1.65!44.10!HOXB6;;chr7:27205136..27205164,-!p1@HOXA9!1.65!43.43!HOXA9;;chr1:201979743..201979762,+!p1@ELF3!1.55!34.70!ELF3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.54!33.58!LHX1;;chr6:34204921..34204939,+!p3@HMGA1!1.46!803.71!HMGA1;;chr17:7493405..7493419,-!p1@SOX15!1.46!27.76!SOX15;;chr7:27205106..27205134,-!p2@HOXA9!1.46!27.54!HOXA9;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.37!22.39!POU3F3;;chr17:46622205..46622218,-!p3@HOXB2!1.32!22.84!HOXB2;;chr17:46703826..46703845,-!p3@HOXB9!1.31!19.48!HOXB9;;chr7:27196217..27196246,-!p2@HOXA7!1.29!18.36!HOXA7;;chr17:46667594..46667619,-!p1@HOXB3!1.28!17.91!HOXB3;;chr7:27153454..27153469,-!p2@HOXA3!1.26!17.24!HOXA3;;chr17:46675558..46675577,-!p2@HOXB6!1.25!16.79!HOXB6;;chr16:86600426..86600441,+!p1@FOXC2!1.24!40.52!FOXC2;;chr16:51185172..51185197,-!p1@SALL1!1.22!15.67!SALL1;;chr6:34204672..34204692,+!p1@HMGA1!1.19!1583.69!HMGA1;;chr2:5832508..5832524,+!p1@SOX11!1.17!13.88!SOX11;;chr5:2751762..2751784,-!p1@IRX2!1.16!13.43!IRX2;;chr12:66218255..66218304,+!p3@HMGA2!1.15!35.15!HMGA2;;chr17:46690839..46690884,-!p1@HOXB8!1.14!12.76!HOXB8;;chr17:46692624..46692659,-!p3@HOXB8!1.13!12.54!HOXB8;;chr2:176994408..176994492,+!p1@HOXD8!1.13!12.54!HOXD8;;chr21:38071430..38071456,+!p1@SIM2!1.12!12.31!SIM2;;chr12:66218598..66218645,+!p2@HMGA2!1.10!53.95!HMGA2;;chr7:27224842..27224872,-!p1@HOXA11!1.09!11.19!HOXA11;;chr1:209979467..209979494,-!p1@IRF6!1.08!12.54!IRF6;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.67!HOXB7;;chr7:27170359..27170381,-!p1@HOXA4!1.07!10.75!HOXA4;;chr5:72744594..72744609,-!p1@FOXD1!1.06!48.36!FOXD1;;chr17:7492684..7492778,-!p2@SOX15!1.06!22.39!SOX15;;chr11:61520075..61520136,+!p1@C11orf9!1.05!21.94!C11orf9;;chr17:46622229..46622257,-!p6@HOXB2!1.05!11.87!HOXB2;;chr17:46622440..46622477,-!p5@HOXB2!1.05!11.42!HOXB2;;chr2:177016336..177016350,+!p1@HOXD4!1.05!10.30!HOXD4;;chr12:54378923..54378966,+!p1@HOXC10!1.04!10.07!HOXC10;;chr7:27213893..27213954,-!p1@HOXA10!1.04!10.07!HOXA10;;chr7:27224795..27224840,-!p2@HOXA11!1.04!10.07!HOXA11;;chr2:176969228..176969260,+!p1@HOXD11!1.04!9.85!HOXD11;;chr10:102505493..102505546,+!p2@PAX2!1.03!9.63!PAX2;;chr2:177053386..177053402,+!p1@HOXD1!1.02!9.40!HOXD1;;chr20:31350184..31350200,+!p1@DNMT3B!1.01!19.48!DNMT3B;;chr6:50789717..50789729,+!p4@TFAP2B!1.01!9.18!TFAP2B;;chr7:27192185..27192209,-!p1@HOXA3!1.01!9.18!HOXA3;;chr12:66218212..66218244,+!p5@HMGA2!1.00!13.21!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.00!11.19!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.30!BNC1;;chr12:54393880..54393962,+!p1@HOXC9!0.99!8.73!HOXC9;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.98!8.51!HOXC5;;chr12:66218183..66218209,+!p4@HMGA2!0.95!15.67!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!0.95!13.43!TFAP2A;;chr17:46692457..46692484,-!p2@HOXB8!0.95!7.84!HOXB8;;chr20:42295745..42295765,+!p1@MYBL2!0.94!130.30!MYBL2;;chr20:42295713..42295738,+!p2@MYBL2!0.94!47.01!MYBL2;;chr12:3069037..3069119,+!p2@TEAD4!0.94!27.31!TEAD4;;chr20:50721803..50721857,-!p2@ZFP64!0.93!12.09!ZFP64;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.92!7.84!GLIS1;;chr2:176969097..176969109,+!p3@HOXD11!0.92!7.39!HOXD11;;chr11:65667884..65667895,-!p2@FOSL1!0.91!28.66!FOSL1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.91!7.16!TFCP2L1;;chr2:176969179..176969226,+!p2@HOXD11!0.90!6.94!HOXD11;;chr4:188916918..188916942,+!p1@ZFP42!0.90!6.94!ZFP42;;chr2:46524897..46524911,+!p2@EPAS1!0.89!19.92!EPAS1;;chr3:111314186..111314204,-!p1@ZBED2!0.89!6.72!ZBED2;;chr2:176972000..176972025,+!p4@HOXD11!0.87!6.49!HOXD11;;chr15:67357924..67357952,+!p2@SMAD3!0.86!43.88!SMAD3;;chr16:51185573..51185593,-!p3@SALL1!0.86!6.27!SALL1;;chr7:101917407..101917443,+!p3@CUX1!0.86!6.27!CUX1;;chr19:17356436..17356481,-!p3@NR2F6!0.85!10.75!NR2F6;;chr9:4300050..4300118,-!p1@GLIS3!0.84!41.19!GLIS3;;chr5:72744445..72744466,-!p2@FOXD1!0.83!9.85!FOXD1;;chr2:176971685..176971700,+!p6@HOXD11!0.83!5.82!HOXD11;;chr10:102505327..102505344,+!p1@PAX2!0.83!5.82!PAX2;;chr2:25475120..25475176,-!p2@DNMT3A!0.82!7.84!DNMT3A;;chr7:27219833..27219845,-!p7@HOXA10!0.82!5.60!HOXA10;;chr21:38071403..38071428,+!p2@SIM2!0.82!5.60!SIM2;;chr17:46622175..46622186,-!p12@HOXB2!0.82!5.60!HOXB2;;chr19:49865646..49865718,-!p1@TEAD2!0.81!50.37!TEAD2;;chr3:52001448..52001478,-!p2@PCBP4!0.80!80.82!PCBP4;;chr17:70117153..70117174,+!p1@SOX9!0.80!59.55!SOX9;;chr5:3595977..3595999,+!p1@IRX1!0.80!5.37!IRX1;;chr6:134210243..134210257,+!p1@TCF21!0.80!5.37!TCF21;;chr2:177001290..177001315,+!p1@HOXD3!0.80!5.37!HOXD3;;chr12:66218836..66218888,+!p1@HMGA2!0.79!52.61!HMGA2;;chr2:95963052..95963106,+!p1@KCNIP3!0.79!5.15!KCNIP3;;chr5:2751785..2751808,-!p2@IRX2!0.79!5.15!IRX2;;chr6:50786571..50786590,+!p2@TFAP2B!0.79!5.15!TFAP2B;;chr7:27196267..27196311,-!p1@HOXA7!0.79!5.15!HOXA7;;chr14:21994337..21994442,-!p1@SALL2!0.78!15.00!SALL2;;chr19:49864746..49864780,-!p2@TEAD2!0.78!7.16!TEAD2;;chr12:66218573..66218596,+!p7@HMGA2!0.77!7.61!HMGA2;;chr12:66218003..66218018,+!p9@HMGA2!0.77!6.04!HMGA2;;chr17:46667628..46667642,-!p2@HOXB3!0.77!4.93!HOXB3;;chr3:52001426..52001447,-!p3@PCBP4!0.76!14.33!PCBP4;;chr5:76383133..76383186,-!p2@ZBED3!0.76!10.30!ZBED3;;chr12:54380404..54380433,+!p3@HOXC10!0.76!4.70!HOXC10;;chr14:38064429..38064486,-!p1@FOXA1!0.76!4.70!FOXA1;;chr17:46675469..46675481,-!p4@HOXB6!0.76!4.70!HOXB6;;chr11:65667846..65667868,-!p1@FOSL1!0.75!134.32!FOSL1;;chr3:169381420..169381535,-!p1@MECOM!0.74!5.37!MECOM;;chr16:51185318..51185348,-!p2@SALL1!0.74!4.48!SALL1;;chr17:46675539..46675551,-!p7@HOXB6!0.74!4.48!HOXB6;;chr17:46703528..46703549,-!p5@HOXB9!0.74!4.48!HOXB9;;chr17:46687959..46688007,-!p2@HOXB7!0.73!6.27!HOXB7;;chr17:46675420..46675465,-!p3@HOXB6!0.72!4.93!HOXB6;;chr6:50786547..50786564,+!p3@TFAP2B!0.72!4.25!TFAP2B;;chr7:27153428..27153440,-!p3@HOXA3!0.72!4.25!HOXA3;;chr7:27219849..27219867,-!p6@HOXA10!0.72!4.25!HOXA10;;chr2:176973498..176973524,+!p1@HOXD10!0.72!4.25!HOXD10;;chr3:69811882..69811898,+!p6@MITF!0.72!4.25!MITF;;chr12:2986275..2986363,-!p1@FOXM1!0.71!47.01!FOXM1;;chr16:54964740..54964789,+!p1@IRX5!0.71!6.27!IRX5;;chr19:45260775..45260838,+!p5@BCL3!0.71!5.60!BCL3;;chr17:46692603..46692621,-!p6@HOXB8!0.70!4.03!HOXB8;;chr12:54379029..54379057,+!p2@HOXC10!0.70!4.03!HOXC10;;chr7:27179814..27179840,-!p4@HOXA3!0.70!4.03!HOXA3;;chr12:2986206..2986258,-!p2@FOXM1!0.69!26.86!FOXM1;;chr12:3068544..3068597,+!p1@TEAD4!0.69!26.42!TEAD4;;chr7:26191809..26191890,+!p1@NFE2L3!0.68!21.27!NFE2L3;;chr7:27183291..27183324,-!p1@HOXA5!0.68!3.81!HOXA5;;chr16:86600458..86600461,+!p3@FOXC2!0.68!3.81!FOXC2;;chr5:176738887..176738934,-!p1@MXD3!0.67!28.43!MXD3;;chr6:10412392..10412409,-!p4@TFAP2A!0.67!4.25!TFAP2A;;chr1:151032860..151032918,+!p1@MLLT11!0.66!49.48!MLLT11;;chr17:41623692..41623715,-!p1@ETV4!0.66!17.24!ETV4;;chr17:46622070..46622109,-!p1@HOXB2!0.66!8.73!HOXB2;;chr17:46675586..46675600,-!p6@HOXB6!0.66!3.58!HOXB6;;chr17:46703942..46703964,-!p4@HOXB9!0.66!3.58!HOXB9;;chr10:102505954..102505973,+!p3@PAX2!0.66!3.58!PAX2;;chr12:54394309..54394336,+!p2@HOXC9!0.66!3.58!HOXC9;;chr2:96012397..96012417,+!p3@KCNIP3!0.66!3.58!KCNIP3;;chr6:34204973..34204990,+!p4@HMGA1!0.65!53.95!HMGA1;;chr6:45390300..45390335,+!p4@RUNX2!0.65!5.82!RUNX2;;chr6:34205372..34205412,+!p5@HMGA1!0.64!19.92!HMGA1;;chr6:45390025..45390076,+!p2@RUNX2!0.64!8.95!RUNX2;;chr16:54320675..54320715,-!p1@IRX3!0.64!8.06!IRX3;;chr1:247171347..247171366,-!p2@ZNF695!0.64!6.72!ZNF695;;chr3:69811858..69811881,+!p5@MITF!0.64!3.36!MITF;;chr5:3595961..3595975,+!p3@IRX1!0.64!3.36!IRX1;;chr7:27169801..27169844,-!p2@HOXA4!0.64!3.36!HOXA4;;chr7:27183263..27183284,-!p2@HOXA5!0.64!3.36!HOXA5;;chr10:119303078..119303169,+!p2@EMX2!0.64!3.36!EMX2;;chr12:54447637..54447659,+!p4@HOXC4!0.64!3.36!HOXC4;;chr17:41622765..41622821,-!p2@ETV4!0.63!5.37!ETV4;;chr17:46622114..46622138,-!p4@HOXB2!0.63!5.37!HOXB2;;chr16:29818160..29818188,+!p6@MAZ!0.62!17.46!MAZ;;chr11:65686732..65686756,+!p2@DRAP1!0.62!15.45!DRAP1;;chr9:117150254..117150271,-!p1@AKNA!0.62!9.85!AKNA;;chr9:4299979..4299996,-!p3@GLIS3!0.62!5.60!GLIS3;;chr6:10415484..10415508,-!p3@TFAP2A!0.62!3.13!TFAP2A;;chr17:41622731..41622764,-!p5@ETV4!0.62!3.13!ETV4;;chr17:46703212..46703238,-!p2@HOXB9!0.62!3.13!HOXB9;;chr21:38071462..38071474,+!p3@SIM2!0.62!3.13!SIM2;;chr12:54380036..54380091,+!p4@HOXC10!0.62!3.13!HOXC10;;chr12:66218378..66218401,+!p6@HMGA2!0.61!5.15!HMGA2;;chr17:46655704..46655718,-!p2@HOXB4!0.61!4.93!HOXB4;;chr12:66218443..66218461,+!p8@HMGA2!0.60!4.03!HMGA2;;chr6:21593973..21593988,+!p1@SOX4!0.59!127.16!SOX4;;chr6:31126291..31126399,+!p1@TCF19!0.59!33.13!TCF19;;chr9:130954041..130954121,-!p2@CIZ1!0.59!15.00!CIZ1;;chr22:41697497..41697515,+!p2@ZC3H7B!0.59!9.18!ZC3H7B;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.59!2.91!POU3F3;;chr2:96012353..96012378,+!p4@KCNIP3!0.59!2.91!KCNIP3;;chr10:119302232..119302265,+!p1@EMX2!0.59!2.91!EMX2;;chr1:42384532..42384603,-!p2@HIVEP3!0.59!2.91!HIVEP3;;chr19:926001..926046,+!p1@ARID3A!0.58!11.42!ARID3A;;chr11:63684602..63684664,-!p1@RCOR2!0.58!6.27!RCOR2;;chr11:65686802..65686818,+!p6@DRAP1!0.58!5.37!DRAP1;;chr10:8096631..8096660,+!p1@GATA3!0.58!3.58!GATA3;;chr17:3571887..3571918,-!p2@TAX1BP3!0.57!37.16!TAX1BP3;;chr6:1312325..1312340,+!p1@FOXQ1!0.57!4.93!FOXQ1;;chr1:935496..935509,-!p3@HES4!0.57!4.48!HES4;;chr5:72744562..72744573,-!p3@FOXD1!0.57!3.58!FOXD1;;chr5:3595934..3595957,+!p2@IRX1!0.57!2.69!IRX1;;chr9:100615499..100615519,+!p1@FOXE1!0.57!2.69!FOXE1;;chr17:36105074..36105086,-!p2@HNF1B!0.57!2.69!HNF1B;;chr17:46667561..46667572,-!p4@HOXB3!0.57!2.69!HOXB3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.57!2.69!HOXC5;;chr2:5832493..5832507,+!p2@SOX11!0.57!2.69!SOX11;;chr12:124873357..124873401,-!p1@NCOR2!0.56!37.83!NCOR2;;chr16:4366053..43660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|ffid_belonging_in_development=CL:0000222
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|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg19.ctss.bed.gz
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor3.CNhs12120.11676-122H2.hg38.nobarcode.ctss.bed.gz
|id=FF:11676-122H2
|is_a=EFO:0002091;;FF:0000155
|is_obsolete=
|library_id=CNhs12120
|library_id_phase_based=2:CNhs12120
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11676
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.GATCAG.11676
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11676
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|name=Renal Proximal Tubular Epithelial Cell, donor3
|namespace=FANTOM5
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|rna_box=122
|rna_catalog_number=SC4105
|rna_concentration=1.38
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=H2
|rna_rin=9.8
|rna_sample_type=total RNA
|rna_tube_id=122H2
|rna_weight_ug=10
|rnaseq_library_id=SRhi10006.GATCAG
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=lot:3589
|sample_cell_type=epithelial cell of kidney, proximal tubule
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.54592506909217e-225!GO:0005737;cytoplasm;3.60233648797499e-191!GO:0043226;organelle;6.56325178834213e-181!GO:0043229;intracellular organelle;8.41336328872911e-181!GO:0043231;intracellular membrane-bound organelle;1.43715324436893e-175!GO:0043227;membrane-bound organelle;4.41509471189822e-175!GO:0044422;organelle part;1.34878673344206e-135!GO:0044446;intracellular organelle part;1.54612403574218e-134!GO:0044444;cytoplasmic part;6.19907919557627e-132!GO:0032991;macromolecular complex;6.58500501681059e-86!GO:0044237;cellular metabolic process;4.22010081374828e-82!GO:0044238;primary metabolic process;2.21997370445639e-81!GO:0030529;ribonucleoprotein complex;9.82366838766027e-78!GO:0005515;protein binding;6.0610417825448e-76!GO:0005739;mitochondrion;9.77472976441813e-74!GO:0043170;macromolecule metabolic process;9.42534570092245e-72!GO:0005634;nucleus;6.2709990569771e-63!GO:0043233;organelle lumen;1.6771322919813e-60!GO:0031974;membrane-enclosed lumen;1.6771322919813e-60!GO:0044428;nuclear part;1.68492244427545e-57!GO:0003723;RNA binding;1.74021926425865e-54!GO:0005840;ribosome;1.83399160231119e-53!GO:0031090;organelle membrane;7.19989785512361e-51!GO:0044429;mitochondrial part;4.45692347796613e-49!GO:0019538;protein metabolic process;6.64954621031693e-49!GO:0006412;translation;9.39082832595249e-49!GO:0016043;cellular component organization and biogenesis;2.44726730434434e-48!GO:0009058;biosynthetic process;5.64139481773093e-47!GO:0003735;structural constituent of ribosome;2.21696781772181e-46!GO:0031967;organelle envelope;8.84341488202906e-44!GO:0044260;cellular macromolecule metabolic process;1.27626963820054e-43!GO:0044249;cellular biosynthetic process;1.47654288051522e-43!GO:0044267;cellular protein metabolic process;2.0229909805988e-43!GO:0031975;envelope;2.19584551677498e-43!GO:0043234;protein complex;1.19881105402782e-42!GO:0009059;macromolecule biosynthetic process;1.34332887966977e-39!GO:0033279;ribosomal subunit;1.90034995157952e-39!GO:0043283;biopolymer metabolic process;2.4337171954737e-39!GO:0015031;protein transport;3.00587530602439e-38!GO:0033036;macromolecule localization;9.6512071488348e-38!GO:0043228;non-membrane-bound organelle;1.1235757258729e-36!GO:0043232;intracellular non-membrane-bound organelle;1.1235757258729e-36!GO:0006996;organelle organization and biogenesis;1.33720396700349e-36!GO:0006396;RNA processing;7.61015039356854e-36!GO:0008104;protein localization;1.89484837967792e-35!GO:0045184;establishment of protein localization;1.25111113227347e-34!GO:0005829;cytosol;1.31154791796402e-34!GO:0005740;mitochondrial envelope;1.47139838775633e-33!GO:0031981;nuclear lumen;1.59269135351709e-33!GO:0046907;intracellular transport;1.52362888419197e-32!GO:0010467;gene expression;5.62979587599619e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.39370827514903e-31!GO:0031966;mitochondrial membrane;3.03146708475353e-31!GO:0019866;organelle inner membrane;8.18899233238654e-31!GO:0065003;macromolecular complex assembly;3.34540602617992e-30!GO:0005743;mitochondrial inner membrane;3.20544542502284e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);7.40220487251034e-29!GO:0016071;mRNA metabolic process;1.3102433745992e-27!GO:0022607;cellular component assembly;2.64150238535007e-27!GO:0006886;intracellular protein transport;2.05344385809516e-26!GO:0006259;DNA metabolic process;5.79503836958468e-26!GO:0008380;RNA splicing;6.12276173975223e-26!GO:0007049;cell cycle;9.63185941287669e-24!GO:0006397;mRNA processing;1.52812011204596e-23!GO:0044445;cytosolic part;1.31133509612382e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.49410965823973e-22!GO:0015934;large ribosomal subunit;4.59769317626508e-21!GO:0051641;cellular localization;1.92760966846029e-20!GO:0051649;establishment of cellular localization;2.67894127172212e-20!GO:0006119;oxidative phosphorylation;5.49806817193492e-20!GO:0044455;mitochondrial membrane part;1.60107047632166e-19!GO:0015935;small ribosomal subunit;1.93471443252384e-19!GO:0005681;spliceosome;2.39435123699114e-19!GO:0031980;mitochondrial lumen;2.65049440218551e-19!GO:0005759;mitochondrial matrix;2.65049440218551e-19!GO:0005654;nucleoplasm;5.23324540133184e-19!GO:0012505;endomembrane system;5.51241384028612e-19!GO:0000278;mitotic cell cycle;9.45853938742889e-19!GO:0000166;nucleotide binding;9.99984438784836e-19!GO:0022402;cell cycle process;1.06953609249682e-18!GO:0048770;pigment granule;2.04208590138374e-17!GO:0042470;melanosome;2.04208590138374e-17!GO:0051186;cofactor metabolic process;4.90693800881636e-17!GO:0006457;protein folding;3.53157700615861e-16!GO:0005783;endoplasmic reticulum;4.51642537520365e-16!GO:0005746;mitochondrial respiratory chain;6.50102527946448e-16!GO:0016874;ligase activity;6.73245049766048e-16!GO:0016462;pyrophosphatase activity;1.01609027232328e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.37378949994436e-15!GO:0008134;transcription factor binding;1.50056045931666e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.7641982269898e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.79198577243115e-15!GO:0044451;nucleoplasm part;1.94530738540416e-15!GO:0005730;nucleolus;2.55327276224029e-15!GO:0043412;biopolymer modification;4.65080101163575e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.13358962891291e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.13358962891291e-15!GO:0003954;NADH dehydrogenase activity;7.13358962891291e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.13358962891291e-15!GO:0017111;nucleoside-triphosphatase activity;7.76231111998818e-15!GO:0005761;mitochondrial ribosome;1.95094486713668e-14!GO:0000313;organellar ribosome;1.95094486713668e-14!GO:0005794;Golgi apparatus;3.03931777250394e-14!GO:0003676;nucleic acid binding;4.55415185281749e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.65593010956402e-14!GO:0012501;programmed cell death;4.84690178765318e-14!GO:0044432;endoplasmic reticulum part;7.20218806805791e-14!GO:0006464;protein modification process;7.91267999076758e-14!GO:0006605;protein targeting;9.04157536261302e-14!GO:0032553;ribonucleotide binding;1.18931196984052e-13!GO:0032555;purine ribonucleotide binding;1.18931196984052e-13!GO:0006915;apoptosis;1.22048351426293e-13!GO:0044265;cellular macromolecule catabolic process;1.36611223654767e-13!GO:0022403;cell cycle phase;1.39194460213201e-13!GO:0005694;chromosome;1.63259093005121e-13!GO:0051276;chromosome organization and biogenesis;1.74993683505676e-13!GO:0044427;chromosomal part;1.77792634816117e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.14777251574178e-13!GO:0017076;purine nucleotide binding;3.29209801337145e-13!GO:0006732;coenzyme metabolic process;3.30629647167229e-13!GO:0022618;protein-RNA complex assembly;3.49313682684707e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.17375413238463e-13!GO:0042773;ATP synthesis coupled electron transport;4.17375413238463e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.07219174307127e-13!GO:0045271;respiratory chain complex I;6.07219174307127e-13!GO:0005747;mitochondrial respiratory chain complex I;6.07219174307127e-13!GO:0006512;ubiquitin cycle;7.57932386365154e-13!GO:0007067;mitosis;8.78780979777189e-13!GO:0043285;biopolymer catabolic process;8.83834708241517e-13!GO:0000087;M phase of mitotic cell cycle;9.36639554397273e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;1.15363024317782e-12!GO:0044248;cellular catabolic process;1.17287817710038e-12!GO:0009057;macromolecule catabolic process;1.42044363563363e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.88195838055749e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.97763494748817e-12!GO:0008219;cell death;2.06941568785404e-12!GO:0016265;death;2.06941568785404e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;4.24150643073906e-12!GO:0019941;modification-dependent protein catabolic process;5.80180431304492e-12!GO:0043632;modification-dependent macromolecule catabolic process;5.80180431304492e-12!GO:0006974;response to DNA damage stimulus;6.32043634531606e-12!GO:0006323;DNA packaging;6.78427098920318e-12!GO:0006511;ubiquitin-dependent protein catabolic process;8.37419520968726e-12!GO:0044257;cellular protein catabolic process;9.23075091993711e-12!GO:0051082;unfolded protein binding;1.13839549265633e-11!GO:0009055;electron carrier activity;1.75454677098492e-11!GO:0016070;RNA metabolic process;1.75729118718318e-11!GO:0005524;ATP binding;1.95222869682836e-11!GO:0005635;nuclear envelope;2.33782724973432e-11!GO:0032559;adenyl ribonucleotide binding;2.68918527554021e-11!GO:0051726;regulation of cell cycle;3.14969481137321e-11!GO:0043687;post-translational protein modification;3.62779178047472e-11!GO:0000785;chromatin;3.81582494877131e-11!GO:0000074;regulation of progression through cell cycle;4.34413207236463e-11!GO:0030163;protein catabolic process;5.17688072032254e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;7.22417964771319e-11!GO:0000375;RNA splicing, via transesterification reactions;7.22417964771319e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.22417964771319e-11!GO:0030554;adenyl nucleotide binding;9.7737571645099e-11!GO:0043067;regulation of programmed cell death;1.6090167383585e-10!GO:0048523;negative regulation of cellular process;2.1623095130981e-10!GO:0031965;nuclear membrane;2.17475669601494e-10!GO:0042981;regulation of apoptosis;2.36387712804082e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.80027141452965e-10!GO:0065004;protein-DNA complex assembly;3.0622389432619e-10!GO:0005789;endoplasmic reticulum membrane;3.40497259194612e-10!GO:0008135;translation factor activity, nucleic acid binding;4.74850655197857e-10!GO:0048193;Golgi vesicle transport;4.97937375670979e-10!GO:0003712;transcription cofactor activity;5.27351184577569e-10!GO:0016740;transferase activity;5.82345006535555e-10!GO:0006399;tRNA metabolic process;6.19546069320347e-10!GO:0000279;M phase;7.32417092734392e-10!GO:0006333;chromatin assembly or disassembly;9.31665037641272e-10!GO:0016192;vesicle-mediated transport;9.88674774856289e-10!GO:0006281;DNA repair;1.16991955426446e-09!GO:0006913;nucleocytoplasmic transport;1.43106302771147e-09!GO:0006260;DNA replication;1.47299626521901e-09!GO:0051301;cell division;1.74036079128892e-09!GO:0042254;ribosome biogenesis and assembly;1.74036079128892e-09!GO:0044453;nuclear membrane part;1.75318532399459e-09!GO:0051188;cofactor biosynthetic process;1.80537447249463e-09!GO:0009259;ribonucleotide metabolic process;1.86706973901722e-09!GO:0006163;purine nucleotide metabolic process;2.10474005168068e-09!GO:0009719;response to endogenous stimulus;2.65498570342114e-09!GO:0051169;nuclear transport;3.07243688259893e-09!GO:0006334;nucleosome assembly;3.10516105787437e-09!GO:0007005;mitochondrion organization and biogenesis;3.28773999257149e-09!GO:0006461;protein complex assembly;3.89722138938581e-09!GO:0030532;small nuclear ribonucleoprotein complex;4.33110648753311e-09!GO:0048519;negative regulation of biological process;5.49165970926912e-09!GO:0009150;purine ribonucleotide metabolic process;6.17699249127411e-09!GO:0031497;chromatin assembly;7.79231772889514e-09!GO:0050794;regulation of cellular process;9.68551523098218e-09!GO:0006164;purine nucleotide biosynthetic process;1.12368020493867e-08!GO:0005793;ER-Golgi intermediate compartment;1.54826615745091e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.72741477988115e-08!GO:0017038;protein import;2.0058015772189e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.06486800587188e-08!GO:0009260;ribonucleotide biosynthetic process;2.12143587950912e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.6607544637297e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.6607544637297e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.6607544637297e-08!GO:0005768;endosome;2.97914285075384e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.33528169311636e-08!GO:0065002;intracellular protein transport across a membrane;3.59025684379071e-08!GO:0006446;regulation of translational initiation;3.89859522444628e-08!GO:0006413;translational initiation;4.85794839455194e-08!GO:0005643;nuclear pore;5.31846857055995e-08!GO:0008639;small protein conjugating enzyme activity;6.94316515347208e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.81377514184622e-08!GO:0009141;nucleoside triphosphate metabolic process;9.07628072970807e-08!GO:0043038;amino acid activation;9.24597493284049e-08!GO:0006418;tRNA aminoacylation for protein translation;9.24597493284049e-08!GO:0043039;tRNA aminoacylation;9.24597493284049e-08!GO:0009199;ribonucleoside triphosphate metabolic process;9.37940925164863e-08!GO:0003743;translation initiation factor activity;1.31084093894007e-07!GO:0009060;aerobic respiration;1.34838141562692e-07!GO:0004842;ubiquitin-protein ligase activity;1.35785735500698e-07!GO:0015630;microtubule cytoskeleton;1.63369723103597e-07!GO:0009056;catabolic process;1.67669764772256e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.75721881304415e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.75721881304415e-07!GO:0006793;phosphorus metabolic process;1.97054292468085e-07!GO:0006796;phosphate metabolic process;1.97054292468085e-07!GO:0008565;protein transporter activity;2.01438262408639e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.2155385640215e-07!GO:0009117;nucleotide metabolic process;2.25061258974131e-07!GO:0042623;ATPase activity, coupled;2.39756876709999e-07!GO:0016604;nuclear body;2.62263387945812e-07!GO:0006366;transcription from RNA polymerase II promoter;3.23642803543974e-07!GO:0019787;small conjugating protein ligase activity;3.4460131392613e-07!GO:0043069;negative regulation of programmed cell death;3.68353135405554e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.86260525836834e-07!GO:0016563;transcription activator activity;3.8669682044392e-07!GO:0051246;regulation of protein metabolic process;3.91181047159636e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.92158621905034e-07!GO:0009108;coenzyme biosynthetic process;4.17878181629835e-07!GO:0003924;GTPase activity;5.57633706346463e-07!GO:0009142;nucleoside triphosphate biosynthetic process;6.38821222075816e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.38821222075816e-07!GO:0016887;ATPase activity;7.27351898978413e-07!GO:0045333;cellular respiration;8.14156979863398e-07!GO:0051329;interphase of mitotic cell cycle;9.05698910514765e-07!GO:0016491;oxidoreductase activity;9.55703331517197e-07!GO:0043066;negative regulation of apoptosis;9.56847469872335e-07!GO:0015986;ATP synthesis coupled proton transport;9.71365973786554e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.71365973786554e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.08183623120845e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.18914185673381e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.18914185673381e-06!GO:0051325;interphase;1.41478841813755e-06!GO:0006916;anti-apoptosis;1.47232149197284e-06!GO:0016881;acid-amino acid ligase activity;1.50868035203629e-06!GO:0046930;pore complex;1.53772976634188e-06!GO:0046034;ATP metabolic process;1.55412633566241e-06!GO:0006364;rRNA processing;1.65254400963737e-06!GO:0030120;vesicle coat;1.67880567620282e-06!GO:0030662;coated vesicle membrane;1.67880567620282e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.82761292184718e-06!GO:0007010;cytoskeleton organization and biogenesis;2.24582338690024e-06!GO:0045259;proton-transporting ATP synthase complex;2.38943134631219e-06!GO:0016568;chromatin modification;2.66290770918678e-06!GO:0019829;cation-transporting ATPase activity;2.66453048033095e-06!GO:0006099;tricarboxylic acid cycle;2.71973471802739e-06!GO:0046356;acetyl-CoA catabolic process;2.71973471802739e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.85271141039867e-06!GO:0044431;Golgi apparatus part;2.85271141039867e-06!GO:0048475;coated membrane;3.10927752797124e-06!GO:0030117;membrane coat;3.10927752797124e-06!GO:0016072;rRNA metabolic process;3.37969864888892e-06!GO:0006084;acetyl-CoA metabolic process;3.93830988700966e-06!GO:0050789;regulation of biological process;4.24467750309516e-06!GO:0031324;negative regulation of cellular metabolic process;4.83842799944567e-06!GO:0031252;leading edge;5.11249517710742e-06!GO:0008654;phospholipid biosynthetic process;5.50115137119232e-06!GO:0005762;mitochondrial large ribosomal subunit;6.17332364009614e-06!GO:0000315;organellar large ribosomal subunit;6.17332364009614e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.58482175959101e-06!GO:0016023;cytoplasmic membrane-bound vesicle;6.92783230037911e-06!GO:0016310;phosphorylation;7.69102185783029e-06!GO:0044440;endosomal part;8.26214136047274e-06!GO:0010008;endosome membrane;8.26214136047274e-06!GO:0030036;actin cytoskeleton organization and biogenesis;9.96691562500959e-06!GO:0003697;single-stranded DNA binding;1.00845721962506e-05!GO:0006754;ATP biosynthetic process;1.01300588788994e-05!GO:0006753;nucleoside phosphate metabolic process;1.01300588788994e-05!GO:0048522;positive regulation of cellular process;1.10560709789133e-05!GO:0009892;negative regulation of metabolic process;1.13495622027213e-05!GO:0031988;membrane-bound vesicle;1.22480719110342e-05!GO:0006403;RNA localization;1.25037413001651e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.28164166175579e-05!GO:0045786;negative regulation of progression through cell cycle;1.3502205119328e-05!GO:0050657;nucleic acid transport;1.49450768611363e-05!GO:0051236;establishment of RNA localization;1.49450768611363e-05!GO:0050658;RNA transport;1.49450768611363e-05!GO:0032446;protein modification by small protein conjugation;1.57907458240905e-05!GO:0051170;nuclear import;1.66550912898891e-05!GO:0016787;hydrolase activity;1.68811192891781e-05!GO:0016126;sterol biosynthetic process;1.78174026255778e-05!GO:0003714;transcription corepressor activity;1.91038711058276e-05!GO:0005788;endoplasmic reticulum lumen;1.97442845953065e-05!GO:0000786;nucleosome;2.23097459034616e-05!GO:0016853;isomerase activity;2.25012871250025e-05!GO:0016779;nucleotidyltransferase activity;2.30954443813224e-05!GO:0019899;enzyme binding;2.31170598200353e-05!GO:0016607;nuclear speck;2.47076908343672e-05!GO:0051187;cofactor catabolic process;2.54029325658641e-05!GO:0009109;coenzyme catabolic process;2.54029325658641e-05!GO:0004298;threonine endopeptidase activity;2.60599844069449e-05!GO:0005667;transcription factor complex;2.60715537038793e-05!GO:0016567;protein ubiquitination;2.64140305294724e-05!GO:0006752;group transfer coenzyme metabolic process;2.68030921002056e-05!GO:0006606;protein import into nucleus;3.2641950135832e-05!GO:0008610;lipid biosynthetic process;3.44612073522165e-05!GO:0005770;late endosome;3.87674768055203e-05!GO:0006888;ER to Golgi vesicle-mediated transport;4.12809182188938e-05!GO:0000245;spliceosome assembly;4.13731363196404e-05!GO:0045454;cell redox homeostasis;4.24095042042578e-05!GO:0016564;transcription repressor activity;4.32307956317694e-05!GO:0043623;cellular protein complex assembly;4.35814641210463e-05!GO:0042802;identical protein binding;4.86393575978346e-05!GO:0003713;transcription coactivator activity;5.05822012794826e-05!GO:0005905;coated pit;5.07321592172949e-05!GO:0006695;cholesterol biosynthetic process;5.3251373315957e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.5003491889165e-05!GO:0065009;regulation of a molecular function;6.52043157174832e-05!GO:0007264;small GTPase mediated signal transduction;6.7751467827412e-05!GO:0005525;GTP binding;6.93967686729396e-05!GO:0004386;helicase activity;7.20005301035781e-05!GO:0030029;actin filament-based process;7.22143809846826e-05!GO:0003899;DNA-directed RNA polymerase activity;7.28264680971317e-05!GO:0048468;cell development;7.47212185925053e-05!GO:0005819;spindle;7.7289833162878e-05!GO:0000139;Golgi membrane;7.89387278748236e-05!GO:0051427;hormone receptor binding;9.04782882640037e-05!GO:0007243;protein kinase cascade;0.000111214128445186!GO:0006839;mitochondrial transport;0.000119342728066596!GO:0043566;structure-specific DNA binding;0.00012153466539585!GO:0001558;regulation of cell growth;0.00012321189027332!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000124333937897612!GO:0031410;cytoplasmic vesicle;0.000139631768972254!GO:0005773;vacuole;0.000154906306915001!GO:0031982;vesicle;0.000172230748219898!GO:0016049;cell growth;0.000178680340302659!GO:0035257;nuclear hormone receptor binding;0.000184629155176608!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000184672738633071!GO:0008361;regulation of cell size;0.000199725230217017!GO:0051028;mRNA transport;0.000209094650905135!GO:0000314;organellar small ribosomal subunit;0.000216059753095743!GO:0005763;mitochondrial small ribosomal subunit;0.000216059753095743!GO:0008026;ATP-dependent helicase activity;0.000221379296063092!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000225604863135019!GO:0008092;cytoskeletal protein binding;0.000230033394493162!GO:0046474;glycerophospholipid biosynthetic process;0.000241316291879354!GO:0043681;protein import into mitochondrion;0.000248066470780933!GO:0005798;Golgi-associated vesicle;0.000294352815228739!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000297100866217682!GO:0006626;protein targeting to mitochondrion;0.000298397922497088!GO:0043065;positive regulation of apoptosis;0.000342669804566526!GO:0016859;cis-trans isomerase activity;0.00036795676239738!GO:0030118;clathrin coat;0.000372012486630265!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000377970706061577!GO:0016481;negative regulation of transcription;0.000379086297040398!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000379086297040398!GO:0046467;membrane lipid biosynthetic process;0.000390035809223941!GO:0030867;rough endoplasmic reticulum membrane;0.000390627826148866!GO:0033116;ER-Golgi intermediate compartment membrane;0.000391901516789965!GO:0005815;microtubule organizing center;0.000400997654815181!GO:0005874;microtubule;0.000402232650150094!GO:0015980;energy derivation by oxidation of organic compounds;0.000409253118303897!GO:0043068;positive regulation of programmed cell death;0.000409658840794456!GO:0032561;guanyl ribonucleotide binding;0.000409658840794456!GO:0019001;guanyl nucleotide binding;0.000409658840794456!GO:0008632;apoptotic program;0.000428733792642867!GO:0005813;centrosome;0.000431691462437535!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000431691462437535!GO:0009165;nucleotide biosynthetic process;0.000451894548156523!GO:0006091;generation of precursor metabolites and energy;0.000458021432122326!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000511168945285529!GO:0030133;transport vesicle;0.000525926590641628!GO:0005769;early endosome;0.000556998182779491!GO:0009967;positive regulation of signal transduction;0.000696488812614939!GO:0008250;oligosaccharyl transferase complex;0.000743698355437768!GO:0044262;cellular carbohydrate metabolic process;0.000760944562258749!GO:0030176;integral to endoplasmic reticulum membrane;0.000774201870399913!GO:0007006;mitochondrial membrane organization and biogenesis;0.000797719359360637!GO:0007088;regulation of mitosis;0.000808666138288768!GO:0006082;organic acid metabolic process;0.000813462374311598!GO:0006613;cotranslational protein targeting to membrane;0.000843875141540863!GO:0005791;rough endoplasmic reticulum;0.0008617003824466!GO:0001726;ruffle;0.000883532895422534!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00089167663158348!GO:0000151;ubiquitin ligase complex;0.000931605253044763!GO:0019752;carboxylic acid metabolic process;0.000954626027356259!GO:0005885;Arp2/3 protein complex;0.000969316605580893!GO:0051920;peroxiredoxin activity;0.00104198291955099!GO:0005048;signal sequence binding;0.00105004064966807!GO:0031968;organelle outer membrane;0.00107249461331266!GO:0006261;DNA-dependent DNA replication;0.00112724650762445!GO:0004674;protein serine/threonine kinase activity;0.00114733427311503!GO:0048518;positive regulation of biological process;0.00116446157330459!GO:0048471;perinuclear region of cytoplasm;0.00118658405461203!GO:0008033;tRNA processing;0.00126499201440771!GO:0000323;lytic vacuole;0.00129145921525169!GO:0005764;lysosome;0.00129145921525169!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00135258980093542!GO:0030119;AP-type membrane coat adaptor complex;0.00135771898497567!GO:0006414;translational elongation;0.00143956700205392!GO:0005741;mitochondrial outer membrane;0.00149539409299583!GO:0005684;U2-dependent spliceosome;0.00151699965722862!GO:0019867;outer membrane;0.00151699965722862!GO:0030132;clathrin coat of coated pit;0.00151699965722862!GO:0006520;amino acid metabolic process;0.00161683199467185!GO:0045941;positive regulation of transcription;0.00162527877854058!GO:0008637;apoptotic mitochondrial changes;0.00163641344833047!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00172131863172055!GO:0040008;regulation of growth;0.00173131477731334!GO:0030658;transport vesicle membrane;0.00179271581357183!GO:0016044;membrane organization and biogenesis;0.00180916981850936!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00190408926013652!GO:0045893;positive regulation of transcription, DNA-dependent;0.0020014472269022!GO:0019843;rRNA binding;0.00201088483920568!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00206487630631634!GO:0030131;clathrin adaptor complex;0.00215288591740178!GO:0043488;regulation of mRNA stability;0.00217292610371839!GO:0043487;regulation of RNA stability;0.00217292610371839!GO:0016301;kinase activity;0.00218563975919513!GO:0007051;spindle organization and biogenesis;0.00219143100036253!GO:0018196;peptidyl-asparagine modification;0.00228257003994815!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00228257003994815!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00233987816369302!GO:0043021;ribonucleoprotein binding;0.00242696230066176!GO:0030125;clathrin vesicle coat;0.00259912776364052!GO:0030665;clathrin coated vesicle membrane;0.00259912776364052!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0027349254957319!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0027349254957319!GO:0051789;response to protein stimulus;0.00285546257258439!GO:0006986;response to unfolded protein;0.00285546257258439!GO:0005657;replication fork;0.00287040835333168!GO:0008094;DNA-dependent ATPase activity;0.00288642075388217!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00293496496189256!GO:0000075;cell cycle checkpoint;0.00311524690831771!GO:0051168;nuclear export;0.00314942983552976!GO:0003684;damaged DNA binding;0.00321970686994155!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00324728381865128!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00324728381865128!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00324728381865128!GO:0033673;negative regulation of kinase activity;0.00345190245132653!GO:0006469;negative regulation of protein kinase activity;0.00345190245132653!GO:0030031;cell projection biogenesis;0.00363177229020755!GO:0051348;negative regulation of transferase activity;0.00363177229020755!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00368324495453233!GO:0004576;oligosaccharyl transferase activity;0.0037551377211937!GO:0003724;RNA helicase activity;0.003768360428321!GO:0006740;NADPH regeneration;0.00381042983277448!GO:0006098;pentose-phosphate shunt;0.00381042983277448!GO:0031902;late endosome membrane;0.00390151315361588!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00396366250768116!GO:0000082;G1/S transition of mitotic cell cycle;0.00405219343149623!GO:0046489;phosphoinositide biosynthetic process;0.00422146107431268!GO:0032508;DNA duplex unwinding;0.0042482978274472!GO:0032392;DNA geometric change;0.0042482978274472!GO:0051287;NAD binding;0.00431505812368006!GO:0006650;glycerophospholipid metabolic process;0.00434853335976123!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.004403269931771!GO:0015399;primary active transmembrane transporter activity;0.004403269931771!GO:0000775;chromosome, pericentric region;0.00441390043871692!GO:0030027;lamellipodium;0.0045149364690293!GO:0017166;vinculin binding;0.0045149364690293!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00488483621797489!GO:0043284;biopolymer biosynthetic process;0.00492296336365379!GO:0065007;biological regulation;0.00499935814068812!GO:0006778;porphyrin metabolic process;0.00547779240927931!GO:0033013;tetrapyrrole metabolic process;0.00547779240927931!GO:0030660;Golgi-associated vesicle membrane;0.00557947311389302!GO:0004680;casein kinase activity;0.00565474837870935!GO:0006402;mRNA catabolic process;0.00571779381356252!GO:0048487;beta-tubulin binding;0.00586637268193937!GO:0008047;enzyme activator activity;0.0060485376844174!GO:0006779;porphyrin biosynthetic process;0.00653869992237017!GO:0033014;tetrapyrrole biosynthetic process;0.00653869992237017!GO:0006979;response to oxidative stress;0.00655077816985488!GO:0019222;regulation of metabolic process;0.0065818940192489!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00669004987861285!GO:0006917;induction of apoptosis;0.00677067154237057!GO:0007346;regulation of progression through mitotic cell cycle;0.00691028305035067!GO:0030880;RNA polymerase complex;0.00691475176767217!GO:0016363;nuclear matrix;0.00691475176767217!GO:0050790;regulation of catalytic activity;0.00691475176767217!GO:0051252;regulation of RNA metabolic process;0.00714483512114271!GO:0006268;DNA unwinding during replication;0.00714483512114271!GO:0045792;negative regulation of cell size;0.00719438674761687!GO:0015992;proton transport;0.00722423277491866!GO:0030308;negative regulation of cell growth;0.0072638049386483!GO:0016311;dephosphorylation;0.00740810379763085!GO:0006595;polyamine metabolic process;0.00746079213376141!GO:0030659;cytoplasmic vesicle membrane;0.00767435956587425!GO:0031072;heat shock protein binding;0.00767435956587425!GO:0006818;hydrogen transport;0.00805412356016522!GO:0008629;induction of apoptosis by intracellular signals;0.00806564820689667!GO:0035258;steroid hormone receptor binding;0.00821673336977763!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00836103181726115!GO:0007265;Ras protein signal transduction;0.00844874036854478!GO:0051087;chaperone binding;0.0086613887025005!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00868305468131085!GO:0012502;induction of programmed cell death;0.00908396897588644!GO:0001836;release of cytochrome c from mitochondria;0.00919184215674928!GO:0044452;nucleolar part;0.00978865400944787!GO:0016741;transferase activity, transferring one-carbon groups;0.00982075396061398!GO:0006220;pyrimidine nucleotide metabolic process;0.00991387718284259!GO:0045892;negative regulation of transcription, DNA-dependent;0.0100838188012998!GO:0006509;membrane protein ectodomain proteolysis;0.0100945475936632!GO:0033619;membrane protein proteolysis;0.0100945475936632!GO:0006401;RNA catabolic process;0.0104288746818668!GO:0016125;sterol metabolic process;0.0105235475110457!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0106988775186877!GO:0008168;methyltransferase activity;0.0107417883296445!GO:0016272;prefoldin complex;0.0107439702455697!GO:0003729;mRNA binding;0.0108738135245967!GO:0000059;protein import into nucleus, docking;0.010931899529016!GO:0043281;regulation of caspase activity;0.0110097905655946!GO:0006383;transcription from RNA polymerase III promoter;0.0112177083617474!GO:0043154;negative regulation of caspase activity;0.0116535953223627!GO:0046483;heterocycle metabolic process;0.0116535953223627!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0116535953223627!GO:0015002;heme-copper terminal oxidase activity;0.0116535953223627!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0116535953223627!GO:0004129;cytochrome-c oxidase activity;0.0116535953223627!GO:0008139;nuclear localization sequence binding;0.0118035500401706!GO:0008286;insulin receptor signaling pathway;0.0118646435253229!GO:0008186;RNA-dependent ATPase activity;0.0118761122031156!GO:0046519;sphingoid metabolic process;0.0120629511414273!GO:0051338;regulation of transferase activity;0.0120678614111786!GO:0008022;protein C-terminus binding;0.012308371841523!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.012416887760804!GO:0000118;histone deacetylase complex;0.0126316128618228!GO:0050662;coenzyme binding;0.0129493740273068!GO:0042168;heme metabolic process;0.013110210395975!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0132239617242216!GO:0000792;heterochromatin;0.0135399873728637!GO:0005869;dynactin complex;0.0138032536179245!GO:0005862;muscle thin filament tropomyosin;0.0140615726670588!GO:0004860;protein kinase inhibitor activity;0.0141032514681232!GO:0003682;chromatin binding;0.0141086884481452!GO:0019206;nucleoside kinase activity;0.0141962115957626!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0142926675535842!GO:0000428;DNA-directed RNA polymerase complex;0.0142926675535842!GO:0044433;cytoplasmic vesicle part;0.014337859000762!GO:0007242;intracellular signaling cascade;0.0143821601799738!GO:0030145;manganese ion binding;0.0143821601799738!GO:0007017;microtubule-based process;0.0144912881570182!GO:0006643;membrane lipid metabolic process;0.0144912881570182!GO:0005774;vacuolar membrane;0.0144912881570182!GO:0006007;glucose catabolic process;0.0145544628799968!GO:0006672;ceramide metabolic process;0.0145597224349689!GO:0006352;transcription initiation;0.0145597224349689!GO:0016791;phosphoric monoester hydrolase activity;0.0148654281855118!GO:0051101;regulation of DNA binding;0.0150089159099753!GO:0006733;oxidoreduction coenzyme metabolic process;0.0151277054076876!GO:0006783;heme biosynthetic process;0.0152575264116646!GO:0003678;DNA helicase activity;0.0155898837397516!GO:0005637;nuclear inner membrane;0.0160576785250921!GO:0006739;NADP metabolic process;0.0162040710528489!GO:0031301;integral to organelle membrane;0.0166951302770386!GO:0004177;aminopeptidase activity;0.0168542720217587!GO:0000096;sulfur amino acid metabolic process;0.0176307988812589!GO:0000049;tRNA binding;0.0178556969786096!GO:0040029;regulation of gene expression, epigenetic;0.0179810988495662!GO:0008283;cell proliferation;0.018459844468214!GO:0006612;protein targeting to membrane;0.0190089661835399!GO:0006066;alcohol metabolic process;0.0196879869792149!GO:0043549;regulation of kinase activity;0.0199173089748459!GO:0003779;actin binding;0.0202015570119245!GO:0031529;ruffle organization and biogenesis;0.0204443316321954!GO:0009112;nucleobase metabolic process;0.0205165767939483!GO:0043492;ATPase activity, coupled to movement of substances;0.0210353213626521!GO:0042393;histone binding;0.0210377557911503!GO:0008538;proteasome activator activity;0.0212144446036357!GO:0051090;regulation of transcription factor activity;0.0216123243820257!GO:0000209;protein polyubiquitination;0.0217777721384088!GO:0046870;cadmium ion binding;0.0220982952329957!GO:0004721;phosphoprotein phosphatase activity;0.022989645125316!GO:0046426;negative regulation of JAK-STAT cascade;0.0230597951203561!GO:0030521;androgen receptor signaling pathway;0.0235801629478989!GO:0043414;biopolymer methylation;0.0239710400660243!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0242506426114801!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0243247409513173!GO:0006497;protein amino acid lipidation;0.0249040233864298!GO:0006519;amino acid and derivative metabolic process;0.0258625928270341!GO:0006284;base-excision repair;0.0258625928270341!GO:0005996;monosaccharide metabolic process;0.0261308134613966!GO:0006289;nucleotide-excision repair;0.0261308134613966!GO:0043433;negative regulation of transcription factor activity;0.0266231461601111!GO:0015631;tubulin binding;0.0267910325436787!GO:0004004;ATP-dependent RNA helicase activity;0.0268035087158084!GO:0046822;regulation of nucleocytoplasmic transport;0.0269533304385574!GO:0006611;protein export from nucleus;0.0269533304385574!GO:0045926;negative regulation of growth;0.0270025385531969!GO:0016197;endosome transport;0.0270646649412327!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.027309375742344!GO:0050178;phenylpyruvate tautomerase activity;0.0279422461221883!GO:0007040;lysosome organization and biogenesis;0.0281674139354641!GO:0048144;fibroblast proliferation;0.0283514872708378!GO:0048145;regulation of fibroblast proliferation;0.0283514872708378!GO:0006458;'de novo' protein folding;0.0283712503389875!GO:0051084;'de novo' posttranslational protein folding;0.0283712503389875!GO:0006302;double-strand break repair;0.0283860852252793!GO:0033559;unsaturated fatty acid metabolic process;0.028452619796384!GO:0006636;unsaturated fatty acid biosynthetic process;0.028452619796384!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0290228973769242!GO:0019318;hexose metabolic process;0.0295044825492624!GO:0009116;nucleoside metabolic process;0.0298114402878343!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.03004114819278!GO:0008625;induction of apoptosis via death domain receptors;0.0303347656781174!GO:0006807;nitrogen compound metabolic process;0.030383262047868!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0315723101079789!GO:0006417;regulation of translation;0.0320000408102691!GO:0030134;ER to Golgi transport vesicle;0.0320874797285209!GO:0009303;rRNA transcription;0.0327262218500063!GO:0048500;signal recognition particle;0.0327770699822189!GO:0006506;GPI anchor biosynthetic process;0.0328672652865442!GO:0005832;chaperonin-containing T-complex;0.0328694134184013!GO:0019887;protein kinase regulator activity;0.032963792624977!GO:0044437;vacuolar part;0.033422848410321!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0334361177752067!GO:0045334;clathrin-coated endocytic vesicle;0.0338377403885749!GO:0035035;histone acetyltransferase binding;0.0340323602660635!GO:0003711;transcription elongation regulator activity;0.0340323602660635!GO:0006749;glutathione metabolic process;0.0343587343095161!GO:0016569;covalent chromatin modification;0.0344308008819758!GO:0006338;chromatin remodeling;0.0345732330383673!GO:0043086;negative regulation of catalytic activity;0.0347410754493151!GO:0008287;protein serine/threonine phosphatase complex;0.0348497628593054!GO:0043189;H4/H2A histone acetyltransferase complex;0.0350534880238629!GO:0003756;protein disulfide isomerase activity;0.0351190050054562!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0351190050054562!GO:0048146;positive regulation of fibroblast proliferation;0.0354544763344765!GO:0009262;deoxyribonucleotide metabolic process;0.0356720055843228!GO:0030032;lamellipodium biogenesis;0.0356720055843228!GO:0009966;regulation of signal transduction;0.0356720055843228!GO:0000086;G2/M transition of mitotic cell cycle;0.0356720055843228!GO:0009124;nucleoside monophosphate biosynthetic process;0.0356720055843228!GO:0009123;nucleoside monophosphate metabolic process;0.0356720055843228!GO:0003746;translation elongation factor activity;0.0357642586664493!GO:0051059;NF-kappaB binding;0.0357642586664493!GO:0051539;4 iron, 4 sulfur cluster binding;0.0357642586664493!GO:0005938;cell cortex;0.0358433811098519!GO:0045859;regulation of protein kinase activity;0.0372199173764344!GO:0007266;Rho protein signal transduction;0.037438577620576!GO:0016584;nucleosome positioning;0.0374741118496085!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0374741118496085!GO:0010257;NADH dehydrogenase complex assembly;0.0374741118496085!GO:0033108;mitochondrial respiratory chain complex assembly;0.0374741118496085!GO:0007050;cell cycle arrest;0.0374992553321748!GO:0006767;water-soluble vitamin metabolic process;0.0375535005520411!GO:0005758;mitochondrial intermembrane space;0.0375845536010677!GO:0005765;lysosomal membrane;0.0377879040987842!GO:0045936;negative regulation of phosphate metabolic process;0.0377879040987842!GO:0000123;histone acetyltransferase complex;0.0382064962698988!GO:0005881;cytoplasmic microtubule;0.0388259826329284!GO:0030508;thiol-disulfide exchange intermediate activity;0.0389922563933468!GO:0007021;tubulin folding;0.0391900699161241!GO:0030663;COPI coated vesicle membrane;0.0393632433588878!GO:0030126;COPI vesicle coat;0.0393632433588878!GO:0030433;ER-associated protein catabolic process;0.0393632433588878!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0393632433588878!GO:0006891;intra-Golgi vesicle-mediated transport;0.0397955811674558!GO:0032906;transforming growth factor-beta2 production;0.0401718895517713!GO:0032909;regulation of transforming growth factor-beta2 production;0.0401718895517713!GO:0006470;protein amino acid dephosphorylation;0.040517771708086!GO:0008426;protein kinase C inhibitor activity;0.0413005137681485!GO:0030384;phosphoinositide metabolic process;0.0413005137681485!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0413523449172057!GO:0009119;ribonucleoside metabolic process;0.0416939200860202!GO:0012506;vesicle membrane;0.0417974733172682!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0418317937237667!GO:0030911;TPR domain binding;0.0422342324381717!GO:0051098;regulation of binding;0.0425163725637194!GO:0006769;nicotinamide metabolic process;0.0425686183377385!GO:0008213;protein amino acid alkylation;0.0426055963810638!GO:0006479;protein amino acid methylation;0.0426055963810638!GO:0000305;response to oxygen radical;0.0427689807628374!GO:0051052;regulation of DNA metabolic process;0.0428261052255219!GO:0043130;ubiquitin binding;0.0428261052255219!GO:0032182;small conjugating protein binding;0.0428261052255219!GO:0008652;amino acid biosynthetic process;0.0438266161493724!GO:0043022;ribosome binding;0.0440551353202545!GO:0032594;protein transport within lipid bilayer;0.0443124123646064!GO:0032907;transforming growth factor-beta3 production;0.0443124123646064!GO:0032596;protein transport into lipid raft;0.0443124123646064!GO:0032910;regulation of transforming growth factor-beta3 production;0.0443124123646064!GO:0032595;B cell receptor transport within lipid bilayer;0.0443124123646064!GO:0033606;chemokine receptor transport within lipid bilayer;0.0443124123646064!GO:0032600;chemokine receptor transport out of lipid raft;0.0443124123646064!GO:0032599;protein transport out of lipid raft;0.0443124123646064!GO:0032597;B cell receptor transport into lipid raft;0.0443124123646064!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0443124123646064!GO:0031970;organelle envelope lumen;0.0443311652299394!GO:0032259;methylation;0.044392763624094!GO:0051540;metal cluster binding;0.044392763624094!GO:0051536;iron-sulfur cluster binding;0.044392763624094!GO:0016860;intramolecular oxidoreductase activity;0.0454037883517595!GO:0030496;midbody;0.0454037883517595!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0454037883517595!GO:0045039;protein import into mitochondrial inner membrane;0.0454037883517595!GO:0035267;NuA4 histone acetyltransferase complex;0.0454037883517595!GO:0006144;purine base metabolic process;0.0458386890519419!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0461164689264689!GO:0012510;trans-Golgi network transport vesicle membrane;0.0461164689264689!GO:0042158;lipoprotein biosynthetic process;0.0469295663940491!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0469976127851812!GO:0031124;mRNA 3'-end processing;0.0475718506746632!GO:0004722;protein serine/threonine phosphatase activity;0.0475718506746632!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0478022545767806!GO:0007093;mitotic cell cycle checkpoint;0.0480394669026484!GO:0048037;cofactor binding;0.0482664839214618!GO:0007033;vacuole organization and biogenesis;0.0482792576430171!GO:0008312;7S RNA binding;0.0486062646745968!GO:0009308;amine metabolic process;0.0486062646745968!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.048624457073525!GO:0030137;COPI-coated vesicle;0.0499001938882261
|sample_id=11676
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=kidney
|top_motifs=XCPE1{core}:1.94685897151;HNF1A:1.34566068545;TFAP2{A,C}:1.23175794841;POU2F1..3:1.23028095355;NKX2-3_NKX2-5:1.16638715468;ZNF148:1.12500743321;RXRA_VDR{dimer}:1.07036770156;EBF1:1.06407230468;ZIC1..3:1.06118154671;SNAI1..3:1.02515153865;ESRRA:1.02349768143;ZEB1:1.02190827135;MYOD1:0.946147464753;GTF2A1,2:0.930551282122;PBX1:0.89555763048;RXR{A,B,G}:0.870454923155;TFCP2:0.836934065906;ZNF423:0.812381851815;HOX{A5,B5}:0.782375449367;SP1:0.782175719855;TFAP2B:0.767404302183;POU3F1..4:0.747780890474;NR6A1:0.746022241729;TEAD1:0.714669434388;GZF1:0.674055649979;HIC1:0.623999554021;TP53:0.590870061338;NR5A1,2:0.583732466901;TFDP1:0.579673341137;NR1H4:0.575809957813;MTF1:0.559162823226;LEF1_TCF7_TCF7L1,2:0.556621718192;TBX4,5:0.554480620815;ESR1:0.552368797398;SOX{8,9,10}:0.547697993087;GFI1:0.526557189078;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.523056923883;ADNP_IRX_SIX_ZHX:0.511227230255;LHX3,4:0.504168297607;E2F1..5:0.486575773388;LMO2:0.465444286605;GLI1..3:0.457670755735;RREB1:0.435128994494;NFY{A,B,C}:0.42135453801;SPZ1:0.397386390495;ONECUT1,2:0.383507035772;POU5F1:0.365475547249;PPARG:0.342324058976;bHLH_family:0.337111519082;GFI1B:0.306564149398;PITX1..3:0.287445262705;BACH2:0.250761683471;FOXQ1:0.197976040455;ZBTB6:0.192343126169;FOS_FOS{B,L1}_JUN{B,D}:0.188951727431;HNF4A_NR2F1,2:0.187155122819;TLX1..3_NFIC{dimer}:0.185291792635;VSX1,2:0.180585415258;IKZF1:0.165117934349;STAT5{A,B}:0.161256890058;SOX2:0.157588275924;TBP:0.157453775207;NR3C1:0.157286829106;SRF:0.150877208369;NFE2L1:0.150616372123;EP300:0.149047743238;FOSL2:0.115535146984;PAX5:0.112899703776;HAND1,2:0.112838474199;UFEwm:0.0985238230099;PRRX1,2:0.0935373638174;PAX8:0.0878589437149;TEF:0.0863823755492;JUN:0.0682588262571;MAZ:0.0668992954069;NFE2:0.0618964039406;NFE2L2:0.0606742679735;HOX{A6,A7,B6,B7}:0.0364551311045;CRX:0.0314550009977;HOXA9_MEIS1:-0.00604588082358;TFAP4:-0.0329702382672;PATZ1:-0.0363763021672;ZNF143:-0.0398077139626;POU1F1:-0.0507085351476;GTF2I:-0.0612026681228;SOX17:-0.0729319787946;MED-1{core}:-0.0731418085678;NFKB1_REL_RELA:-0.0802812839396;HES1:-0.0923309436392;STAT2,4,6:-0.115040950982;KLF4:-0.132072560087;AR:-0.132898433533;REST:-0.13833377921;MTE{core}:-0.146103898918;ALX1:-0.147074819649;NANOG:-0.150679070993;ALX4:-0.154858142702;TOPORS:-0.161733372915;CUX2:-0.206130974496;GCM1,2:-0.210444670687;MYB:-0.212668106084;EGR1..3:-0.234913849713;EN1,2:-0.247329415469;PAX6:-0.259082655906;OCT4_SOX2{dimer}:-0.263689274151;MEF2{A,B,C,D}:-0.272574291282;ZFP161:-0.273956752884;RORA:-0.308528007422;RUNX1..3:-0.339340249224;DBP:-0.3606276731;FOXM1:-0.366071741535;HLF:-0.374529903417;ETS1,2:-0.383109070434;ATF2:-0.386783084424;GATA6:-0.401837321236;MZF1:-0.40487879057;NKX3-1:-0.467810672359;NHLH1,2:-0.481735868203;MYBL2:-0.502381397297;AIRE:-0.505216165443;FOXL1:-0.508360813855;TAL1_TCF{3,4,12}:-0.513517626072;CDC5L:-0.523707001316;SPIB:-0.530138691954;RFX1:-0.530692880161;POU6F1:-0.542899182172;YY1:-0.549423505253;CEBPA,B_DDIT3:-0.549593374615;BREu{core}:-0.561481763451;NKX3-2:-0.576443124114;ELK1,4_GABP{A,B1}:-0.577904523879;SOX5:-0.598703233908;T:-0.60867742742;ATF6:-0.612762487742;SPI1:-0.640004657565;NRF1:-0.642579683395;ZNF384:-0.643877267089;FOX{F1,F2,J1}:-0.656611138048;SMAD1..7,9:-0.672041892295;FOXD3:-0.681983817698;HOX{A4,D4}:-0.70071899155;PAX1,9:-0.700743254307;HBP1_HMGB_SSRP1_UBTF:-0.714227888463;NKX2-2,8:-0.726520916276;CDX1,2,4:-0.728717703999;HMX1:-0.733949113025;ARID5B:-0.751261263996;ZNF238:-0.755135033341;FOXP1:-0.767825291115;PRDM1:-0.768450166062;XBP1:-0.772289032237;NFIL3:-0.797393793286;HSF1,2:-0.804908154326;ATF4:-0.851566834593;NKX6-1,2:-0.899555473937;TLX2:-0.908397599733;ATF5_CREB3:-0.910732590239;PAX3,7:-0.918610972296;IRF7:-0.91984191492;RFX2..5_RFXANK_RFXAP:-0.920371695429;DMAP1_NCOR{1,2}_SMARC:-0.93970665895;FOX{D1,D2}:-0.96881090477;MYFfamily:-0.99190286865;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.01506514926;IRF1,2:-1.01561280978;PDX1:-1.0342421575;SREBF1,2:-1.05082337004;PAX2:-1.06682232624;NFATC1..3:-1.08999938174;NANOG{mouse}:-1.09235737045;NFIX:-1.10014753104;FOX{I1,J2}:-1.1060706213;NKX2-1,4:-1.12234657826;IKZF2:-1.13675326178;STAT1,3:-1.13794949027;FOXA2:-1.14608689852;FOXP3:-1.15588051564;CREB1:-1.16435608557;ELF1,2,4:-1.16539677297;EVI1:-1.20014981029;TGIF1:-1.26504187471;FOXO1,3,4:-1.28474389078;AHR_ARNT_ARNT2:-1.28583759939;PAX4:-1.37168208664;FOXN1:-1.4736402266;GATA4:-1.47487395033;ZBTB16:-1.53405865989;HMGA1,2:-1.54065770165;BPTF:-1.57191945648;MAFB:-1.58235738788;HIF1A:-1.78387977265;RBPJ:-1.81394557343
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11676-122H2;search_select_hide=table117:FF:11676-122H2
}}
}}

Latest revision as of 18:14, 4 June 2020

Name:Renal Proximal Tubular Epithelial Cell, donor3
Species:Human (Homo sapiens)
Library ID:CNhs12120
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typeepithelial cell of kidney, proximal tubule
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC4105
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005901
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12120 CAGE DRX008439 DRR009311
Accession ID Hg19

Library idBAMCTSS
CNhs12120 DRZ000736 DRZ002121
Accession ID Hg38

Library idBAMCTSS
CNhs12120 DRZ012086 DRZ013471
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005901
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10006.GATCAG sRNA-Seq DRX037075 DRR041441
Accession ID Hg19

Library idBAMCTSS
SRhi10006.GATCAG DRZ007083


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.107
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0954
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0554
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.418
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0208
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0667
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.175
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.265
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.326
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.559
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.584
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.0382
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.161
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.161
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.161
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12120

Jaspar motifP-value
MA0002.20.844
MA0003.10.384
MA0004.10.663
MA0006.10.0736
MA0007.10.0295
MA0009.10.651
MA0014.10.871
MA0017.10.112
MA0018.20.272
MA0019.10.524
MA0024.10.155
MA0025.10.89
MA0027.10.23
MA0028.10.0333
MA0029.10.484
MA0030.10.19
MA0031.10.0158
MA0035.20.173
MA0038.10.0193
MA0039.20.0606
MA0040.10.816
MA0041.10.308
MA0042.10.999
MA0043.10.0198
MA0046.15.87274e-24
MA0047.20.13
MA0048.10.417
MA0050.15.06451e-6
MA0051.10.00693
MA0052.10.555
MA0055.10.0217
MA0057.10.257
MA0058.10.993
MA0059.10.682
MA0060.16.89533e-7
MA0061.10.987
MA0062.21.20706e-4
MA0065.20.0499
MA0066.10.369
MA0067.10.00761
MA0068.10.801
MA0069.10.287
MA0070.10.103
MA0071.10.26
MA0072.10.571
MA0073.10.975
MA0074.10.27
MA0076.10.00106
MA0077.10.0424
MA0078.10.599
MA0079.20.648
MA0080.22.40255e-6
MA0081.10.00212
MA0083.10.0657
MA0084.10.0313
MA0087.10.348
MA0088.10.887
MA0090.10.00483
MA0091.10.724
MA0092.10.987
MA0093.10.764
MA0099.26.96642e-6
MA0100.10.139
MA0101.10.95
MA0102.25.57884e-4
MA0103.19.53262e-6
MA0104.20.46
MA0105.10.766
MA0106.10.02
MA0107.10.927
MA0108.23.69271e-4
MA0111.10.402
MA0112.20.245
MA0113.10.743
MA0114.10.185
MA0115.10.536
MA0116.10.779
MA0117.10.0796
MA0119.10.992
MA0122.10.445
MA0124.10.502
MA0125.10.655
MA0131.10.0826
MA0135.10.32
MA0136.11.90112e-7
MA0137.20.0285
MA0138.20.907
MA0139.10.901
MA0140.10.828
MA0141.10.095
MA0142.10.522
MA0143.10.495
MA0144.10.648
MA0145.10.128
MA0146.10.086
MA0147.10.667
MA0148.10.754
MA0149.10.247
MA0150.10.553
MA0152.10.116
MA0153.12.46969e-10
MA0154.10.578
MA0155.10.0753
MA0156.11.87247e-4
MA0157.10.0506
MA0159.10.481
MA0160.10.237
MA0162.10.0653
MA0163.10.479
MA0164.10.904
MA0258.10.301
MA0259.10.131



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12120

Novel motifP-value
10.52
100.155
1000.0793
1010.0395
1020.379
1030.325
1040.547
1050.17
1060.0432
1079.93439e-4
1080.338
1090.407
110.48
1100.344
1110.786
1120.301
1130.187
1140.108
1150.334
1160.268
1170.801
1180.517
1190.275
120.873
1200.476
1210.785
1220.407
1230.291
1240.222
1250.294
1260.561
1270.333
1280.298
1290.381
130.25
1300.155
1310.0717
1320.0661
1330.125
1340.623
1350.81
1360.0768
1370.0311
1380.0536
1390.127
140.621
1400.625
1410.345
1420.704
1430.547
1440.793
1450.229
1460.0492
1470.657
1480.126
1490.915
150.544
1500.13
1510.565
1520.0527
1530.095
1540.306
1550.686
1560.463
1570.627
1580.201
1590.756
160.445
1600.0473
1610.58
1620.0393
1630.954
1640.224
1650.0798
1660.97
1670.368
1680.144
1690.203
170.256
180.799
190.699
20.23
200.982
210.698
220.262
230.718
240.869
250.571
260.131
270.306
280.316
290.866
30.479
300.118
310.497
320.927
330.122
340.262
350.172
360.826
370.378
380.546
390.343
40.442
400.00277
410.288
420.485
430.918
440.883
450.154
460.757
470.658
480.34
490.48
50.302
500.213
510.358
520.282
530.494
540.52
550.766
560.189
570.945
580.301
590.0471
60.373
600.47
610.438
620.209
630.303
640.414
650.11
660.117
670.461
680.88
690.0286
70.968
700.461
710.491
720.276
730.0456
740.0953
750.754
760.117
770.0154
780.428
790.81
80.225
800.0996
810.117
820.269
830.876
840.6
850.449
860.54
870.0541
880.621
890.589
90.718
900.0293
910.981
920.437
930.203
940.365
950.361
960.313
970.704
980.705
992.6779e-4



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12120


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000255 (eukaryotic cell)
0000239 (brush border epithelial cell)
1000615 (kidney cortex tubule cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
0002306 (epithelial cell of proximal tubule)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0006853 (renal cortex tubule)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0007685 (region of nephron tubule)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0004134 (proximal tubule)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000155 (human renal proximal tubular epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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