FF:11679-122H5: Difference between revisions

Latest revision as of 18:14, 4 June 2020

Name:	Renal Mesangial Cells, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12121
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	NA
age	NA
cell type	mesangial cell, intraglomerular
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC4205
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005379

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12121		CAGE		DRX008436		DRR009308

Accession ID Hg19

Library id		BAM		CTSS
CNhs12121		DRZ000733		DRZ002118

Accession ID Hg38

Library id		BAM		CTSS
CNhs12121		DRZ012083		DRZ013468

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0788
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.273
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.177
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0748
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.477
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0819
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.377
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.447
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.166
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.177
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.339
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.213
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.177
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0887
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.302
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.302
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.377
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12121

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.832
MA0003.1	MA0003.1	0.309
MA0004.1	MA0004.1	0.584
MA0006.1	MA0006.1	0.17
MA0007.1	MA0007.1	0.144
MA0009.1	MA0009.1	0.631
MA0014.1	MA0014.1	0.968
MA0017.1	MA0017.1	0.122
MA0018.2	MA0018.2	0.233
MA0019.1	MA0019.1	0.0618
MA0024.1	MA0024.1	0.0467
MA0025.1	MA0025.1	0.969
MA0027.1	MA0027.1	0.561
MA0028.1	MA0028.1	0.0147
MA0029.1	MA0029.1	0.229
MA0030.1	MA0030.1	0.486
MA0031.1	MA0031.1	0.0868
MA0035.2	MA0035.2	0.123
MA0038.1	MA0038.1	0.0807
MA0039.2	MA0039.2	0.147
MA0040.1	MA0040.1	0.689
MA0041.1	MA0041.1	0.162
MA0042.1	MA0042.1	0.769
MA0043.1	MA0043.1	0.0325
MA0046.1	MA0046.1	4.34574e-15
MA0047.2	MA0047.2	0.234
MA0048.1	MA0048.1	0.725
MA0050.1	MA0050.1	8.09736e-4
MA0051.1	MA0051.1	0.00633
MA0052.1	MA0052.1	0.175
MA0055.1	MA0055.1	0.128
MA0057.1	MA0057.1	0.245
MA0058.1	MA0058.1	0.606
MA0059.1	MA0059.1	0.944
MA0060.1	MA0060.1	0.0263
MA0061.1	MA0061.1	0.537
MA0062.2	MA0062.2	6.40528e-6
MA0065.2	MA0065.2	0.0932
MA0066.1	MA0066.1	0.533
MA0067.1	MA0067.1	0.082
MA0068.1	MA0068.1	0.886
MA0069.1	MA0069.1	0.897
MA0070.1	MA0070.1	0.00611
MA0071.1	MA0071.1	0.296
MA0072.1	MA0072.1	0.6
MA0073.1	MA0073.1	0.944
MA0074.1	MA0074.1	0.107
MA0076.1	MA0076.1	1.16679e-4
MA0077.1	MA0077.1	0.0724
MA0078.1	MA0078.1	0.755
MA0079.2	MA0079.2	0.396
MA0080.2	MA0080.2	1.4506e-5
MA0081.1	MA0081.1	0.00792
MA0083.1	MA0083.1	4.22292e-4
MA0084.1	MA0084.1	0.274
MA0087.1	MA0087.1	0.732
MA0088.1	MA0088.1	0.779
MA0090.1	MA0090.1	0.00616
MA0091.1	MA0091.1	0.454
MA0092.1	MA0092.1	0.896
MA0093.1	MA0093.1	0.611
MA0099.2	MA0099.2	0.167
MA0100.1	MA0100.1	0.0307
MA0101.1	MA0101.1	0.863
MA0102.2	MA0102.2	0.00475
MA0103.1	MA0103.1	0.00597
MA0104.2	MA0104.2	0.284
MA0105.1	MA0105.1	0.857
MA0106.1	MA0106.1	0.329
MA0107.1	MA0107.1	0.396
MA0108.2	MA0108.2	1.8239e-7
MA0111.1	MA0111.1	0.182
MA0112.2	MA0112.2	0.163
MA0113.1	MA0113.1	0.52
MA0114.1	MA0114.1	0.21
MA0115.1	MA0115.1	0.712
MA0116.1	MA0116.1	0.775
MA0117.1	MA0117.1	0.111
MA0119.1	MA0119.1	0.959
MA0122.1	MA0122.1	0.655
MA0124.1	MA0124.1	0.804
MA0125.1	MA0125.1	0.366
MA0131.1	MA0131.1	0.124
MA0135.1	MA0135.1	0.0265
MA0136.1	MA0136.1	2.88478e-9
MA0137.2	MA0137.2	0.219
MA0138.2	MA0138.2	0.368
MA0139.1	MA0139.1	0.805
MA0140.1	MA0140.1	0.924
MA0141.1	MA0141.1	0.151
MA0142.1	MA0142.1	0.217
MA0143.1	MA0143.1	0.342
MA0144.1	MA0144.1	0.894
MA0145.1	MA0145.1	0.166
MA0146.1	MA0146.1	0.045
MA0147.1	MA0147.1	0.364
MA0148.1	MA0148.1	0.585
MA0149.1	MA0149.1	0.889
MA0150.1	MA0150.1	0.108
MA0152.1	MA0152.1	0.121
MA0153.1	MA0153.1	4.2403e-6
MA0154.1	MA0154.1	0.337
MA0155.1	MA0155.1	0.024
MA0156.1	MA0156.1	2.81689e-6
MA0157.1	MA0157.1	0.0509
MA0159.1	MA0159.1	0.263
MA0160.1	MA0160.1	0.447
MA0162.1	MA0162.1	0.136
MA0163.1	MA0163.1	0.992
MA0164.1	MA0164.1	0.893
MA0258.1	MA0258.1	0.166
MA0259.1	MA0259.1	0.194

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12121

Novel motif	Logo	P-value
1	1	0.355
10	10	0.0862
100	100	0.25
101	101	0.228
102	102	0.703
103	103	0.67
104	104	0.481
105	105	0.256
106	106	0.0531
107	107	0.00267
108	108	0.373
109	109	0.326
11	11	0.414
110	110	0.394
111	111	0.685
112	112	0.726
113	113	0.975
114	114	0.347
115	115	0.121
116	116	0.253
117	117	0.7
118	118	0.796
119	119	0.379
12	12	0.903
120	120	0.542
121	121	0.897
122	122	0.331
123	123	0.00486
124	124	0.285
125	125	0.195
126	126	0.741
127	127	0.434
128	128	0.168
129	129	0.0976
13	13	0.567
130	130	0.397
131	131	0.35
132	132	0.05
133	133	0.215
134	134	0.966
135	135	0.933
136	136	0.563
137	137	0.00394
138	138	0.189
139	139	0.516
14	14	0.658
140	140	0.947
141	141	0.106
142	142	0.565
143	143	0.801
144	144	0.614
145	145	0.355
146	146	0.0795
147	147	0.676
148	148	0.123
149	149	0.423
15	15	0.223
150	150	0.331
151	151	0.663
152	152	0.055
153	153	0.0807
154	154	0.222
155	155	0.965
156	156	0.572
157	157	0.328
158	158	0.252
159	159	0.595
16	16	0.453
160	160	0.0958
161	161	0.389
162	162	0.0499
163	163	0.526
164	164	0.55
165	165	0.0751
166	166	0.8
167	167	0.17
168	168	0.918
169	169	0.165
17	17	0.463
18	18	0.85
19	19	0.44
2	2	0.294
20	20	0.78
21	21	0.543
22	22	0.181
23	23	0.518
24	24	0.547
25	25	0.175
26	26	0.374
27	27	0.402
28	28	0.219
29	29	0.604
3	3	0.647
30	30	0.112
31	31	0.34
32	32	0.00215
33	33	0.727
34	34	0.129
35	35	0.266
36	36	0.624
37	37	0.39
38	38	0.745
39	39	0.312
4	4	0.555
40	40	0.0242
41	41	0.282
42	42	0.488
43	43	0.911
44	44	0.865
45	45	0.155
46	46	0.639
47	47	0.972
48	48	0.676
49	49	0.581
5	5	0.281
50	50	0.298
51	51	0.387
52	52	0.281
53	53	0.402
54	54	0.381
55	55	0.342
56	56	0.365
57	57	0.511
58	58	0.278
59	59	0.0419
6	6	0.241
60	60	0.604
61	61	0.589
62	62	0.216
63	63	0.472
64	64	0.398
65	65	0.0709
66	66	0.583
67	67	0.421
68	68	0.0393
69	69	0.15
7	7	0.571
70	70	0.622
71	71	0.519
72	72	0.323
73	73	0.0705
74	74	0.179
75	75	0.727
76	76	0.076
77	77	0.0201
78	78	0.861
79	79	0.573
8	8	0.297
80	80	0.635
81	81	0.275
82	82	0.696
83	83	0.69
84	84	0.717
85	85	0.814
86	86	0.714
87	87	0.367
88	88	0.354
89	89	0.142
9	9	0.387
90	90	0.00206
91	91	0.341
92	92	0.813
93	93	0.302
94	94	0.466
95	95	0.434
96	96	0.467
97	97	0.74
98	98	0.914
99	99	0.00488

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12121

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000154 human renal mesangial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000183 (contractile cell)
0000630 (supportive cell)
0000255 (eukaryotic cell)
0000669 (pericyte cell)
0000650 (mesangial cell)
1000500 (kidney interstitial cell)
1000618 (juxtaglomerular complex cell)
1001318 (renal interstitial pericyte)
1000746 (glomerular cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
1000612 (kidney corpuscule cell)
0002173 (extraglomerular mesangial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0003891 (stroma)
0005172 (abdomen element)
0003567 (abdomen connective tissue)
0003838 (abdominal segment connective tissue)
0003586 (trunk connective tissue)
0010317 (germ layer / neural crest derived structure)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0005169 (interstitial tissue)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0002321 (extraglomerular mesangium)
0000074 (renal glomerulus)
0001225 (cortex of kidney)
0005215 (kidney interstitium)
0001229 (renal corpuscle)
0002303 (juxtaglomerular apparatus)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
0002319 (mesangium)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000154 (human renal mesangial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005379
-|accession_numbers=CAGE;DRX008436;DRR009308;DRZ000733;DRZ002118
+|accession_numbers=CAGE;DRX008436;DRR009308;DRZ000733;DRZ002118;DRZ012083;DRZ013468
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0003891,UBERON:0005172,UBERON:0003567,UBERON:0003838,UBERON:0003586,UBERON:0010317,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0005169,UBERON:0004810,UBERON:0001285,UBERON:0002321,UBERON:0000074,UBERON:0001225,UBERON:0005215,UBERON:0001229,UBERON:0002303,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916,UBERON:0002319
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000183,CL:0000630,CL:0000255,CL:0000669,CL:0000650,CL:1000500,CL:1000618,CL:1001318,CL:1000746,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:1000612,CL:0002173
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.23!168.57!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.04!109.37!HNF1B;;chr1:201979703..201979721,+!p2@ELF3!1.94!86.29!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.94!86.29!ELF3;;chr11:61520075..61520136,+!p1@C11orf9!1.82!133.95!C11orf9;;chr17:46703687..46703740,-!p1@HOXB9!1.81!63.21!HOXB9;;chr16:86600426..86600441,+!p1@FOXC2!1.73!126.43!FOXC2;;chr17:46682321..46682362,-!p1@HOXB6!1.68!46.66!HOXB6;;chr11:32457075..32457095,-!p1@WT1!1.58!36.62!WT1;;chr6:134210243..134210257,+!p1@TCF21!1.56!35.12!TCF21;;chr7:27205136..27205164,-!p1@HOXA9!1.55!34.62!HOXA9;;chr7:27196217..27196246,-!p2@HOXA7!1.54!33.61!HOXA7;;chr7:27224842..27224872,-!p1@HOXA11!1.49!29.60!HOXA11;;chr12:54378923..54378966,+!p1@HOXC10!1.49!29.60!HOXC10;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.47!28.60!HOXC5;;chr17:35294075..35294102,+!p1@ENST00000559335!1.47!28.60!LHX1;;chr12:54393880..54393962,+!p1@HOXC9!1.45!27.09!HOXC9;;chr7:27153454..27153469,-!p2@HOXA3!1.40!24.08!HOXA3;;chr7:27224795..27224840,-!p2@HOXA11!1.39!23.58!HOXA11;;chr10:102505327..102505344,+!p1@PAX2!1.31!19.57!PAX2;;chr2:176969228..176969260,+!p1@HOXD11!1.30!19.06!HOXD11;;chr10:102505493..102505546,+!p2@PAX2!1.29!18.56!PAX2;;chr5:72744594..72744609,-!p1@FOXD1!1.28!80.77!FOXD1;;chr7:27205106..27205134,-!p2@HOXA9!1.28!18.06!HOXA9;;chr7:44143925..44143970,+!p1@AEBP1!1.26!376.27!AEBP1;;chr7:27192185..27192209,-!p1@HOXA3!1.22!15.55!HOXA3;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.19!15.55!GLIS1;;chr7:27213893..27213954,-!p1@HOXA10!1.19!14.55!HOXA10;;chr2:45236540..45236577,-!p1@SIX2!1.19!14.55!SIX2;;chr12:54379029..54379057,+!p2@HOXC10!1.18!14.05!HOXC10;;chr17:46688334..46688385,-!p1@HOXB7!1.17!20.07!HOXB7;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!1.15!131.44!GLIS2;;chr17:46622070..46622109,-!p1@HOXB2!1.14!28.60!HOXB2;;chr19:45260775..45260838,+!p5@BCL3!1.12!16.05!BCL3;;chr7:44143978..44143989,+!p2@AEBP1!1.10!21.57!AEBP1;;chr7:27170359..27170381,-!p1@HOXA4!1.10!11.54!HOXA4;;chr2:176994408..176994492,+!p1@HOXD8!1.10!11.54!HOXD8;;chr2:177053386..177053402,+!p1@HOXD1!1.10!11.54!HOXD1;;chr5:72744445..72744466,-!p2@FOXD1!1.09!19.06!FOXD1;;chr14:21994337..21994442,-!p1@SALL2!1.08!30.60!SALL2;;chr19:49864746..49864780,-!p2@TEAD2!1.08!15.05!TEAD2;;chr16:51185172..51185197,-!p1@SALL1!1.08!11.04!SALL1;;chr10:77161533..77161546,-!p2@ZNF503!1.07!43.15!ZNF503;;chr1:209979467..209979494,-!p1@IRF6!1.07!12.04!IRF6;;chr15:96874145..96874166,+!p7@NR2F2!1.06!20.07!NR2F2;;chr20:50721803..50721857,-!p2@ZFP64!1.05!16.05!ZFP64;;chr10:77161650..77161661,-!p4@ZNF503!1.04!14.05!ZNF503;;chr12:3069037..3069119,+!p2@TEAD4!1.02!33.11!TEAD4;;chr17:1959369..1959388,+!p2@HIC1!1.02!25.08!HIC1;;chr19:17356436..17356481,-!p3@NR2F6!1.02!16.56!NR2F6;;chr17:46622114..46622138,-!p4@HOXB2!1.02!14.55!HOXB2;;chr17:46622205..46622218,-!p3@HOXB2!1.02!11.04!HOXB2;;chr2:5832508..5832524,+!p1@SOX11!1.02!9.53!SOX11;;chr20:30433396..30433414,-!p1@FOXS1!1.02!9.53!FOXS1;;chr7:27183263..27183284,-!p2@HOXA5!1.02!9.53!HOXA5;;chr2:239148671..239148686,-!p1@HES6!1.00!33.61!HES6;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.00!9.03!HOXC5;;chr11:32457413..32457431,-!p2@WT1!0.98!8.53!WT1;;chr17:46675558..46675577,-!p2@HOXB6!0.98!8.53!HOXB6;;chr15:96874012..96874042,+!p2@NR2F2!0.95!74.25!NR2F2;;chr19:49865646..49865718,-!p1@TEAD2!0.94!68.23!TEAD2;;chr6:34204672..34204692,+!p1@HMGA1!0.93!873.44!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!0.93!9.53!FOXF1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.92!85.79!TAX1BP3;;chr17:38465413..38465438,+!p5@RARA!0.92!12.04!RARA;;chr11:46299199..46299233,+!p1@CREB3L1!0.90!37.63!CREB3L1;;chr5:92918919..92918942,+!p1@NR2F1!0.90!32.61!NR2F1;;chr12:66218255..66218304,+!p3@HMGA2!0.90!19.57!HMGA2;;chr7:44143997..44144008,+!p3@AEBP1!0.90!9.03!AEBP1;;chr17:46675420..46675465,-!p3@HOXB6!0.90!8.03!HOXB6;;chr17:46667594..46667619,-!p1@HOXB3!0.90!7.02!HOXB3;;chr17:46690839..46690884,-!p1@HOXB8!0.90!7.02!HOXB8;;chr7:27196196..27196210,-!p5@HOXA7!0.90!7.02!HOXA7;;chr6:34204921..34204939,+!p3@HMGA1!0.89!214.72!HMGA1;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.89!33.61!GLIS2;;chr10:77161504..77161530,-!p1@ZNF503!0.88!93.31!ZNF503;;chr2:121493425..121493474,+!p1@GLI2!0.88!15.05!GLI2;;chr20:31350184..31350200,+!p1@DNMT3B!0.88!14.05!DNMT3B;;chr2:25475120..25475176,-!p2@DNMT3A!0.88!9.03!DNMT3A;;chr2:176969097..176969109,+!p3@HOXD11!0.88!6.52!HOXD11;;chr16:86600870..86600921,+!p2@FOXC2!0.88!6.52!FOXC2;;chr11:63684602..63684664,-!p1@RCOR2!0.87!13.04!RCOR2;;chr2:121493492..121493537,+!p2@GLI2!0.87!11.04!GLI2;;chr20:6748325..6748352,+!p1@BMP2!0.87!9.53!BMP2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.85!464.06!TAX1BP3;;chr15:96874244..96874259,+!p5@NR2F2!0.85!15.55!NR2F2;;chr2:176969179..176969226,+!p2@HOXD11!0.85!6.02!HOXD11;;chr2:176972000..176972025,+!p4@HOXD11!0.85!6.02!HOXD11;;chr2:176973498..176973524,+!p1@HOXD10!0.85!6.02!HOXD10;;chr7:27219833..27219845,-!p7@HOXA10!0.85!6.02!HOXA10;;chr5:72743793..72743855,-!p4@FOXD1!0.84!7.02!FOXD1;;chr17:46622229..46622257,-!p6@HOXB2!0.84!7.02!HOXB2;;chr3:52001448..52001478,-!p2@PCBP4!0.83!85.79!PCBP4;;chr16:79633894..79633954,-!p3@MAF!0.83!11.54!MAF;;chr12:54772960..54773015,-!p3@ZNF385A!0.82!29.10!ZNF385A;;chr1:935467..935484,-!p1@HES4!0.82!26.59!HES4;;chr6:21593973..21593988,+!p1@SOX4!0.81!210.71!SOX4;;chr3:52001426..52001447,-!p3@PCBP4!0.81!16.56!PCBP4;;chr12:66218183..66218209,+!p4@HMGA2!0.81!11.04!HMGA2;;chr11:46299539..46299620,+!p2@CREB3L1!0.81!9.53!CREB3L1;;chr15:80696703..80696754,+!p1@ARNT2!0.81!7.53!ARNT2;;chr16:86600458..86600461,+!p3@FOXC2!0.81!5.52!FOXC2;;chr17:46621146..46621180,-!p10@HOXB2!0.81!5.52!HOXB2;;chr2:176971685..176971700,+!p6@HOXD11!0.81!5.52!HOXD11;;chr2:45236579..45236596,-!p2@SIX2!0.81!5.52!SIX2;;chr16:29817841..29817865,+!p1@MAZ!0.80!122.91!MAZ;;chr6:21597765..21597779,+!p2@SOX4!0.80!46.16!SOX4;;chr14:61116183..61116208,-!p1@SIX1!0.80!21.57!SIX1;;chr12:80084167..80084197,-!p5@PAWR!0.80!13.04!PAWR;;chr15:96869255..96869291,+!p6@NR2F2!0.80!10.03!NR2F2;;chr15:96869114..96869160,+!p11@NR2F2!0.80!7.53!NR2F2;;chr17:46621937..46621966,-!p2@HOXB2!0.79!15.05!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.79!6.02!BNC1;;chr17:38498402..38498445,+!p3@RARA!0.78!19.57!RARA;;chr14:21994449..21994524,-!p2@SALL2!0.78!16.05!SALL2;;chr11:32456954..32456965,-!p4@WT1!0.78!5.02!WT1;;chr16:86601088..86601105,+!p5@FOXC2!0.78!5.02!FOXC2;;chr2:25475094..25475112,-!p3@DNMT3A!0.78!5.02!DNMT3A;;chr6:50786591..50786614,+!p1@TFAP2B!0.78!5.02!TFAP2B;;chr16:79634624..79634642,-!p1@MAF!0.77!21.07!MAF;;chr1:151032922..151032951,+!p2@MLLT11!0.77!8.53!MLLT11;;chr5:178368186..178368238,+!p1@ZNF454!0.76!9.03!ZNF454;;chr6:41514078..41514158,+!p1@FOXP4!0.75!46.16!FOXP4;;chr7:28448965..28448994,+!p2@CREB5!0.75!17.56!CREB5;;chr19:56092195..56092248,-!p1@ZNF579!0.74!53.18!ZNF579;;chr7:6655225..6655279,+!p1@ENST00000457543!0.74!7.02!ZNF853;;chr7:27153428..27153440,-!p3@HOXA3!0.74!4.52!HOXA3;;chr10:102505954..102505973,+!p3@PAX2!0.74!4.52!PAX2;;chr12:54394309..54394336,+!p2@HOXC9!0.74!4.52!HOXC9;;chr12:54402745..54402788,+!p1@HOXC8!0.74!4.52!HOXC8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.74!4.52!POU3F3;;chr2:177001290..177001315,+!p1@HOXD3!0.74!4.52!HOXD3;;chr3:111314186..111314204,-!p1@ZBED2!0.74!4.52!ZBED2;;chr4:57522598..57522664,-!p3@HOPX!0.74!4.52!HOPX;;chr5:92919100..92919135,+!p3@NR2F1!0.73!5.52!NR2F1;;chr16:29817789..29817838,+!p2@MAZ!0.72!64.22!MAZ;;chr1:151032860..151032918,+!p1@MLLT11!0.72!57.19!MLLT11;;chr17:38498594..38498661,+!p2@RARA!0.72!15.55!RARA;;chr2:28615716..28615733,+!p1@FOSL2!0.71!220.24!FOSL2;;chr19:19303731..19303783,+!p1@RFXANK!0.71!111.38!RFXANK;;chr9:35732647..35732678,+!p2@CREB3!0.71!25.59!CREB3;;chr22:42229246..42229270,+!p2@SREBF2!0.70!57.19!SREBF2;;chr12:54447599..54447630,+!p3@HOXC4!0.70!5.02!HOXC4;;chr10:102495136..102495146,+!p8@PAX2!0.70!4.01!PAX2;;chr10:119303078..119303169,+!p2@EMX2!0.70!4.01!EMX2;;chr10:134599649..134599653,-!p1@NKX6-2!0.70!4.01!NKX6-2;;chr12:54394059..54394088,+!p3@HOXC9!0.70!4.01!HOXC9;;chr21:38071430..38071456,+!p1@SIM2!0.70!4.01!SIM2;;chr5:2751762..2751784,-!p1@IRX2!0.70!4.01!IRX2;;chr6:35464729..35464738,-!p3@TEAD3!0.70!4.01!TEAD3;;chr7:27219754..27219759,-!p16@HOXA10!0.70!4.01!HOXA10;;chr7:27219849..27219867,-!p6@HOXA10!0.70!4.01!HOXA10;;chr2:96012353..96012378,+!p4@KCNIP3!0.70!4.01!KCNIP3;;chr2:96012397..96012417,+!p3@KCNIP3!0.70!4.01!KCNIP3;;chr16:86612320..86612394,+!p1@FOXL1!0.70!4.01!FOXL1;;chr17:36104873..36104903,-!p3@HNF1B!0.70!4.01!HNF1B;;chr17:46622175..46622186,-!p12@HOXB2!0.70!4.01!HOXB2;;chr17:46667561..46667572,-!p4@HOXB3!0.70!4.01!HOXB3;;chr17:46692457..46692484,-!p2@HOXB8!0.70!4.01!HOXB8;;chr15:96873984..96873999,+!p3@NR2F2!0.69!32.61!NR2F2;;chr16:8962853..8962878,-!p1@CARHSP1!0.68!255.86!CARHSP1;;chr12:50479109..50479146,+!p2@SMARCD1!0.68!73.75!SMARCD1;;chr20:306489..306564,+!p1@SOX12!0.68!47.16!SOX12;;chr12:80084137..80084165,-!p10@PAWR!0.68!5.02!PAWR;;chr1:935519..935532,-!p4@HES4!0.68!4.52!HES4;;chr15:96869222..96869251,+!p18@NR2F2!0.68!4.52!NR2F2;;chr19:17356697..17356762,-!p1@NR2F6!0.67!58.70!NR2F6;;chr7:150974206..150974255,-!p1@SMARCD3!0.67!26.09!SMARCD3;;chr8:128749984..128750033,+!p4@MYC!0.67!15.05!MYC;;chr17:7492684..7492778,-!p2@SOX15!0.67!8.53!SOX15;;chr12:80084279..80084293,-!p8@PAWR!0.67!6.52!PAWR;;chr15:96874216..96874236,+!p13@NR2F2!0.67!6.02!NR2F2;;chr6:44233252..44233296,-!p1@NFKBIE!0.66!40.64!NFKBIE;;chr19:45504688..45504782,+!p1@RELB!0.66!25.08!RELB;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.08!MYBL2;;chr7:150076406..150076456,+!p1@ZNF775!0.66!19.06!ZNF775;;chr3:71630980..71631110,-!p3@FOXP1!0.66!14.05!FOXP1;;chr1:41827095..41827155,+!p1@FOXO6!0.66!5.02!FOXO6;;chr5:72744562..72744573,-!p3@FOXD1!0.65!4.52!FOXD1;;chr7:27183291..27183324,-!p1@HOXA5!0.65!3.51!HOXA5;;chr4:57522513..57522548,-!p4@HOPX!0.65!3.51!HOPX;;chr10:119302508..119302559,+!p5@EMX2!0.65!3.51!EMX2;;chr10:119302645..119302712,+!p3@EMX2!0.65!3.51!EMX2;;chr16:51185573..51185593,-!p3@SALL1!0.65!3.51!SALL1;;chr17:467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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000630;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000669;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000746;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1001318;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003891;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004875;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004876;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009201
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Mesangial%2520Cells%252c%2520donor3.CNhs12121.11679-122H5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11679-122H5
 |is_a=EFO:0002091;;FF:0000154
 |is_obsolete=
 |library_id=CNhs12121
-|library_id_phase_based=1:CNhs12121
+|library_id_phase_based=2:CNhs12121
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11679
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11679
 |name=Renal Mesangial Cells, donor3
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12121,LSID839,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10005,,,
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@@ Line 90: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11679-122H5;search_select_hide=table117:FF:11679-122H5
 }}

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FF:11679-122H5: Difference between revisions

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Latest revision as of 18:14, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0