FF:11527-119I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005596 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005596 | ||
|accession_numbers=CAGE;DRX008316;DRR009188;DRZ000613;DRZ001998;DRZ011963;DRZ013348 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037059;DRR041425;DRZ007067 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0000020,UBERON:0003566,UBERON:0003891,UBERON:0001032,UBERON:0010317,UBERON:0000964,UBERON:0001777,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0010409,UBERON:0004456,UBERON:0001456,UBERON:0010230 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002363 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000084 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.71!508.26!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.67!56.04!FOXF1;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.51!HIF3A;;chr2:239756671..239756732,+!p1@TWIST2!1.44!82.76!TWIST2;;chr6:34204921..34204939,+!p3@HMGA1!1.42!732.74!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!126.41!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.42!68.09!TWIST1;;chr20:55204351..55204377,+!p1@TFAP2C!1.39!29.65!TFAP2C;;chr4:111558135..111558198,-!p2@PITX2!1.38!22.81!PITX2;;chr5:2751762..2751784,-!p1@IRX2!1.36!21.83!IRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.35!21.50!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.28!23.78!PRRX2;;chr2:239756739..239756755,+!p2@TWIST2!1.26!29.00!TWIST2;;chr6:1389789..1389821,+!p1@FOXF2!1.20!20.53!FOXF2;;chr20:42543441..42543497,+!p1@TOX2!1.18!62.56!TOX2;;chr3:138665937..138665968,-!p1@FOXL2!1.16!13.36!FOXL2;;chr17:46132044..46132080,+!p4@NFE2L1!1.14!12.71!NFE2L1;;chr14:61116183..61116208,-!p1@SIX1!1.13!47.89!SIX1;;chr4:111544219..111544240,-!p1@PITX2!1.13!12.38!PITX2;;chr1:170633348..170633399,+!p2@PRRX1!1.10!15.96!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!1.09!301.05!FOSL1;;chr16:86600870..86600921,+!p2@FOXC2!1.08!11.08!FOXC2;;chr5:321810..321877,+!p1@AHRR!1.07!34.21!AHRR;;chr11:615570..615721,-!p2@IRF7!1.06!20.85!IRF7;;chr11:46299539..46299620,+!p2@CREB3L1!1.06!17.92!CREB3L1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.06!10.43!POU3F3;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.73!BNC1;;chr6:50786591..50786614,+!p1@TFAP2B!1.05!10.10!TFAP2B;;chr12:66218255..66218304,+!p3@HMGA2!1.02!26.06!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!0.97!33.23!FOSL1;;chr11:113930425..113930471,+!p1@ZBTB16!0.97!12.05!ZBTB16;;chr7:19157043..19157088,-!p2@TWIST1!0.96!21.18!TWIST1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.96!12.38!ZNF853;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!10.10!TFAP2A;;chr8:60031619..60031676,-!p1@TOX!0.95!17.59!TOX;;chr10:119303078..119303169,+!p2@EMX2!0.95!7.82!EMX2;;chr17:41622765..41622821,-!p2@ETV4!0.94!12.05!ETV4;;chr11:65687222..65687240,+!p7@DRAP1!0.94!10.10!DRAP1;;chr8:60031682..60031710,-!p2@TOX!0.93!12.38!TOX;;chr7:28448965..28448994,+!p2@CREB5!0.91!26.39!CREB5;;chr17:41623009..41623053,-!p4@ETV4!0.91!11.73!ETV4;;chr8:60031762..60031803,-!p3@TOX!0.90!10.43!TOX;;chr6:85473156..85473210,-!p2@TBX18!0.90!8.47!TBX18;;chr11:63684602..63684664,-!p1@RCOR2!0.89!14.01!RCOR2;;chr7:44143925..44143970,+!p1@AEBP1!0.88!156.71!AEBP1;;chr6:85474299..85474324,-!p1@TBX18!0.88!12.05!TBX18;;chr5:2751785..2751808,-!p2@IRX2!0.88!6.52!IRX2;;chr5:3595977..3595999,+!p1@IRX1!0.88!6.52!IRX1;;chr3:185826855..185826911,-!p1@ETV5!0.86!179.85!ETV5;;chr12:66218598..66218645,+!p2@HMGA2!0.84!29.32!HMGA2;;chr11:113930291..113930339,+!p2@ZBTB16!0.84!10.10!ZBTB16;;chr8:93074803..93074845,-!p1@RUNX1T1!0.84!5.86!RUNX1T1;;chr15:57511609..57511651,+!p2@TCF12!0.83!10.10!TCF12;;chr8:60031809..60031835,-!p4@TOX!0.83!7.49!TOX;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.83!7.49!PRDM11;;chr21:40177845..40177863,+!p1@ETS2!0.82!355.13!ETS2;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.82!DRAP1;;chr16:86600426..86600441,+!p1@FOXC2!0.80!14.01!FOXC2;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.36!TOX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.79!5.21!RUNX1T1;;chr18:52969844..52969895,-!p27@TCF4!0.79!5.21!TCF4;;chr11:64764435..64764449,-!p1@BATF2!0.78!7.17!BATF2;;chr11:615942..615957,-!p1@IRF7!0.77!50.83!IRF7;;chr5:72744594..72744609,-!p1@FOXD1!0.77!24.11!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.47!FOXD1;;chr17:8027418..8027432,-!p1@HES7!0.77!4.89!HES7;;chr12:85673977..85674015,+!p1@ALX1!0.77!4.89!ALX1;;chr12:57914286..57914304,-!p1@DDIT3!0.76!190.92!DDIT3;;chr3:185826286..185826318,-!p5@ETV5!0.76!5.54!ETV5;;chr11:65686952..65686975,+!p5@DRAP1!0.75!28.02!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.74!5.21!TFAP2A;;chr8:72756063..72756125,-!p1@MSC!0.73!9.45!MSC;;chr17:41622925..41622976,-!p3@ETV4!0.73!6.84!ETV4;;chr6:34204973..34204990,+!p4@HMGA1!0.72!63.86!HMGA1;;chr18:3451646..3451691,+!p3@TGIF1!0.72!12.38!TGIF1;;chr14:74256787..74256858,-!p6@C14orf43!0.72!4.24!C14orf43;;chr2:5832508..5832524,+!p1@SOX11!0.72!4.24!SOX11;;chr3:138665969..138665993,-!p2@FOXL2!0.72!4.24!FOXL2;;chr2:46524537..46524553,+!p1@EPAS1!0.70!451.90!EPAS1;;chr11:65687158..65687216,+!p4@DRAP1!0.70!25.74!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.70!6.52!ZBTB38;;chr12:10875351..10875422,-!p4@CSDA!0.69!8.15!CSDA;;chr16:54964740..54964789,+!p1@IRX5!0.69!5.86!IRX5;;chr1:2985726..2985752,+!p2@PRDM16!0.69!3.91!PRDM16;;chr5:3595961..3595975,+!p3@IRX1!0.69!3.91!IRX1;;chr6:41562324..41562340,+!p16@FOXP4!0.69!3.91!FOXP4;;chr8:60031934..60031986,-!p6@TOX!0.69!3.91!TOX;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.67!42.68!GLIS2;;chr11:65687362..65687436,+!p3@DRAP1!0.67!19.22!DRAP1;;chr17:59477233..59477263,+!p1@TBX2!0.67!12.71!TBX2;;chr20:48807779..48807802,+!p10@CEBPB!0.67!6.52!CEBPB;;chr6:34204672..34204692,+!p1@HMGA1!0.66!466.88!HMGA1;;chr22:38598086..38598105,+!p1@MAFF!0.66!44.31!MAFF;;chr19:45260775..45260838,+!p5@BCL3!0.66!4.89!BCL3;;chr1:2985760..2985774,+!p1@PRDM16!0.66!3.58!PRDM16;;chr9:129376201..129376225,+!p1@LMX1B!0.66!3.58!LMX1B;;chr11:65101305..65101359,+!p1@DPF2!0.65!160.62!DPF2;;chr2:231084639..231084654,-!p2@SP110!0.65!6.19!SP110;;chr16:54320101..54320125,-!p4@IRX3!0.65!5.21!IRX3;;chr1:170632959..170632987,+!p4@PRRX1!0.65!3.91!PRRX1;;chr18:3450161..3450183,+!p1@TGIF1!0.64!134.88!TGIF1;;chr5:178368186..178368238,+!p1@ZNF454!0.64!6.52!ZNF454;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.54!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!0.64!3.91!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!0.64!3.91!PRRX1;;chr8:48650715..48650735,-!p1@CEBPD!0.63!501.74!CEBPD;;chr6:35464817..35464894,-!p1@TEAD3!0.63!59.30!TEAD3;;chr3:128206762..128206781,-!p2@GATA2!0.63!23.78!GATA2;;chr21:40177892..40177903,+!p2@ETS2!0.63!14.99!ETS2;;chr9:110250697..110250738,-!p2@KLF4!0.63!3.91!KLF4;;chr1:170632250..170632277,+!p7@PRRX1!0.63!3.26!PRRX1;;chr12:2986206..2986258,-!p2@FOXM1!0.62!22.48!FOXM1;;chr1:25256756..25256774,-!p1@RUNX3!0.62!6.52!RUNX3;;chr16:54320158..54320200,-!p5@IRX3!0.62!4.89!IRX3;;chr12:56753869..56753930,-!p1@STAT2!0.61!162.90!STAT2;;chr21:47063625..47063658,+!p1@PCBP3!0.61!15.64!PCBP3;;chr3:12329397..12329433,+!p2@PPARG!0.61!7.82!PPARG;;chr14:24630902..24630948,+!p2@IRF9!0.61!3.91!IRF9;;chr14:61116168..61116180,-!p2@SIX1!0.61!3.58!SIX1;;chr17:38474489..38474548,+!p1@RARA!0.60!114.68!RARA;;chr19:19303731..19303783,+!p1@RFXANK!0.60!86.01!RFXANK;;chr9:110252035..110252057,-!p1@KLF4!0.60!57.67!KLF4;;chr3:52001448..52001478,-!p2@PCBP4!0.60!50.17!PCBP4;;chr11:62369108..62369183,-!p3@MTA2!0.60!46.92!MTA2;;chr5:92918919..92918942,+!p1@NR2F1!0.60!15.64!NR2F1;;chr3:12329358..12329393,+!p3@PPARG!0.60!8.47!PPARG;;chr5:43067636..43067674,+!p6@ZNF131!0.60!4.24!ZNF131;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.60!3.26!GLIS1;;chr17:46126136..46126152,+!p1@NFE2L1!0.59!183.76!NFE2L1;;chr20:48807875..48807982,+!p2@CEBPB!0.59!76.89!CEBPB;;chr8:72756667..72756736,-!p2@MSC!0.59!4.89!MSC;;chr5:3595934..3595957,+!p2@IRX1!0.59!2.93!IRX1;;chr16:54320127..54320148,-!p6@IRX3!0.59!2.93!IRX3;;chr17:41622982..41623001,-!p11@ETV4!0.59!2.93!ETV4;;chr18:52969674..52969685,-!p24@TCF4!0.59!2.93!TCF4;;chr3:12329464..12329472,+!p6@PPARG!0.59!2.93!PPARG;;chr11:45202609..45202623,+!p@chr11:45202609..45202623,+!0.59!2.93!PRDM11;;chr12:57853634..57853662,+!p2@GLI1!0.59!2.93!GLI1;;chr19:50432453..50432468,+!p1@ATF5!0.58!196.46!ATF5;;chr17:7590797..7590815,-!p1@TP53!0.58!152.48!TP53;;chr3:187463248..187463264,-!p1@BCL6!0.58!74.28!BCL6;;chr12:26277956..26277980,-!p1@BHLHE41!0.58!12.05!BHLHE41;;chr7:150946015..150946070,-!p3@SMARCD3!0.58!6.84!SMARCD3;;chr2:200323414..200323455,-!p1@SATB2!0.58!6.84!SATB2;;chr15:42749722..42749739,-!p2@ZFP106!0.58!5.54!ZFP106;;chr6:10412600..10412637,-!p1@TFAP2A!0.58!5.21!TFAP2A;;chr7:139762641..139762768,-!p1@PARP12!0.57!46.26!PARP12;;chr3:185826764..185826803,-!p2@ETV5!0.57!12.05!ETV5;;chr12:66218212..66218244,+!p5@HMGA2!0.57!4.24!HMGA2;;chr17:59477275..59477286,+!p3@TBX2!0.57!3.91!TBX2;;chr1:43148716..43148756,+!p6@YBX1!0.57!3.58!YBX1;;chr1:8938766..8938774,-!p2@ENO1!0.56!229.04!ENO1;;chr19:6424783..6424802,-!p2@KHSRP!0.56!67.44!KHSRP;;chr19:39390587..39390646,+!p1@NFKBIB!0.56!52.46!NFKBIB;;chr12:53625966..53626012,-!p2@RARG!0.56!8.15!RARG;;chr16:8962202..8962222,-!p3@CARHSP1!0.56!5.21!CARHSP1;;chr19:49864746..49864780,-!p2@TEAD2!0.56!3.91!TEAD2;;chr7:100076873..100076880,-!p6@TSC22D4!0.56!3.26!TSC22D4;;chr6:1389989..1390019,+!p2@FOXF2!0.56!2.61!FOXF2;;chr7:73038839..73038862,-!p1@MLXIPL!0.56!2.61!MLXIPL;;chr7:97840743..97840786,+!p1@BHLHA15!0.56!2.61!BHLHA15;;chr12:53625846..53625861,-!p6@RARG!0.56!2.61!RARG;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.56!2.61!POU3F3;;chr3:141121820..141121838,+!p9@ZBTB38!0.56!2.61!ZBTB38;;chr1:110613276..110613299,-!p2@ALX3!0.56!2.61!ALX3;;chr19:3366570..3366619,+!p1@NFIC!0.55!103.61!NFIC;;chr14:75894714..75894733,+!p1@JDP2!0.55!91.88!JDP2;;chr2:231084659..231084721,-!p1@SP110!0.55!75.91!SP110;;chr6:126102292..126102329,+!p3@NCOA7!0.55!10.10!NCOA7;;chr18:3449586..3449617,+!p8@TGIF1!0.55!4.56!TGIF1;;chr1:8926441..8926473,-!p10@ENO1!0.55!4.24!ENO1;;chr20:48807351..48807384,+!p1@CEBPB!0.54!325.16!CEBPB;;chr19:6424813..6424835,-!p1@KHSRP!0.54!197.11!KHSRP;;chr9:94186101..94186122,-!p1@NFIL3!0.54!43.66!NFIL3;;chr8:48650697..48650708,-!p2@CEBPD!0.54!23.78!CEBPD;;chr19:20188776..20188826,+!p1@ZNF90!0.54!7.82!ZNF90;;chr8:72756637..72756664,-!p3@MSC!0.54!2.93!MSC;;chr3:71179699..71179744,-!p2@FOXP1!0.53!22.81!FOXP1;;chr17:46621937..46621966,-!p2@HOXB2!0.53!7.82!HOXB2;;chr17:46622229..46622257,-!p6@HOXB2!0.53!2.93!HOXB2;;chr8:128748308..128748324,+!p2@MYC!0.52!83.41!MYC;;chr18:47807845..47807918,-!p1@MBD1!0.52!52.13!MBD1;;chr7:148892653..148892729,+!p1@ZNF282!0.52!43.66!ZNF282;;chr9:94186131..94186174,-!p2@NFIL3!0.52!24.44!NFIL3;;chr14:21994337..21994442,-!p1@SALL2!0.52!7.82!SALL2;;chr18:3450293..3450304,+!p4@TG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| |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.71!508.26!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.67!56.04!FOXF1;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.51!HIF3A;;chr2:239756671..239756732,+!p1@TWIST2!1.44!82.76!TWIST2;;chr6:34204921..34204939,+!p3@HMGA1!1.42!732.74!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!126.41!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.42!68.09!TWIST1;;chr20:55204351..55204377,+!p1@TFAP2C!1.39!29.65!TFAP2C;;chr4:111558135..111558198,-!p2@PITX2!1.38!22.81!PITX2;;chr5:2751762..2751784,-!p1@IRX2!1.36!21.83!IRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.35!21.50!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.28!23.78!PRRX2;;chr2:239756739..239756755,+!p2@TWIST2!1.26!29.00!TWIST2;;chr6:1389789..1389821,+!p1@FOXF2!1.20!20.53!FOXF2;;chr20:42543441..42543497,+!p1@TOX2!1.18!62.56!TOX2;;chr3:138665937..138665968,-!p1@FOXL2!1.16!13.36!FOXL2;;chr17:46132044..46132080,+!p4@NFE2L1!1.14!12.71!NFE2L1;;chr14:61116183..61116208,-!p1@SIX1!1.13!47.89!SIX1;;chr4:111544219..111544240,-!p1@PITX2!1.13!12.38!PITX2;;chr1:170633348..170633399,+!p2@PRRX1!1.10!15.96!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!1.09!301.05!FOSL1;;chr16:86600870..86600921,+!p2@FOXC2!1.08!11.08!FOXC2;;chr5:321810..321877,+!p1@AHRR!1.07!34.21!AHRR;;chr11:615570..615721,-!p2@IRF7!1.06!20.85!IRF7;;chr11:46299539..46299620,+!p2@CREB3L1!1.06!17.92!CREB3L1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.06!10.43!POU3F3;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.73!BNC1;;chr6:50786591..50786614,+!p1@TFAP2B!1.05!10.10!TFAP2B;;chr12:66218255..66218304,+!p3@HMGA2!1.02!26.06!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!0.97!33.23!FOSL1;;chr11:113930425..113930471,+!p1@ZBTB16!0.97!12.05!ZBTB16;;chr7:19157043..19157088,-!p2@TWIST1!0.96!21.18!TWIST1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.96!12.38!ZNF853;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!10.10!TFAP2A;;chr8:60031619..60031676,-!p1@TOX!0.95!17.59!TOX;;chr10:119303078..119303169,+!p2@EMX2!0.95!7.82!EMX2;;chr17:41622765..41622821,-!p2@ETV4!0.94!12.05!ETV4;;chr11:65687222..65687240,+!p7@DRAP1!0.94!10.10!DRAP1;;chr8:60031682..60031710,-!p2@TOX!0.93!12.38!TOX;;chr7:28448965..28448994,+!p2@CREB5!0.91!26.39!CREB5;;chr17:41623009..41623053,-!p4@ETV4!0.91!11.73!ETV4;;chr8:60031762..60031803,-!p3@TOX!0.90!10.43!TOX;;chr6:85473156..85473210,-!p2@TBX18!0.90!8.47!TBX18;;chr11:63684602..63684664,-!p1@RCOR2!0.89!14.01!RCOR2;;chr7:44143925..44143970,+!p1@AEBP1!0.88!156.71!AEBP1;;chr6:85474299..85474324,-!p1@TBX18!0.88!12.05!TBX18;;chr5:2751785..2751808,-!p2@IRX2!0.88!6.52!IRX2;;chr5:3595977..3595999,+!p1@IRX1!0.88!6.52!IRX1;;chr3:185826855..185826911,-!p1@ETV5!0.86!179.85!ETV5;;chr12:66218598..66218645,+!p2@HMGA2!0.84!29.32!HMGA2;;chr11:113930291..113930339,+!p2@ZBTB16!0.84!10.10!ZBTB16;;chr8:93074803..93074845,-!p1@RUNX1T1!0.84!5.86!RUNX1T1;;chr15:57511609..57511651,+!p2@TCF12!0.83!10.10!TCF12;;chr8:60031809..60031835,-!p4@TOX!0.83!7.49!TOX;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.83!7.49!PRDM11;;chr21:40177845..40177863,+!p1@ETS2!0.82!355.13!ETS2;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.82!DRAP1;;chr16:86600426..86600441,+!p1@FOXC2!0.80!14.01!FOXC2;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.36!TOX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.79!5.21!RUNX1T1;;chr18:52969844..52969895,-!p27@TCF4!0.79!5.21!TCF4;;chr11:64764435..64764449,-!p1@BATF2!0.78!7.17!BATF2;;chr11:615942..615957,-!p1@IRF7!0.77!50.83!IRF7;;chr5:72744594..72744609,-!p1@FOXD1!0.77!24.11!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.47!FOXD1;;chr17:8027418..8027432,-!p1@HES7!0.77!4.89!HES7;;chr12:85673977..85674015,+!p1@ALX1!0.77!4.89!ALX1;;chr12:57914286..57914304,-!p1@DDIT3!0.76!190.92!DDIT3;;chr3:185826286..185826318,-!p5@ETV5!0.76!5.54!ETV5;;chr11:65686952..65686975,+!p5@DRAP1!0.75!28.02!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.74!5.21!TFAP2A;;chr8:72756063..72756125,-!p1@MSC!0.73!9.45!MSC;;chr17:41622925..41622976,-!p3@ETV4!0.73!6.84!ETV4;;chr6:34204973..34204990,+!p4@HMGA1!0.72!63.86!HMGA1;;chr18:3451646..3451691,+!p3@TGIF1!0.72!12.38!TGIF1;;chr14:74256787..74256858,-!p6@C14orf43!0.72!4.24!C14orf43;;chr2:5832508..5832524,+!p1@SOX11!0.72!4.24!SOX11;;chr3:138665969..138665993,-!p2@FOXL2!0.72!4.24!FOXL2;;chr2:46524537..46524553,+!p1@EPAS1!0.70!451.90!EPAS1;;chr11:65687158..65687216,+!p4@DRAP1!0.70!25.74!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.70!6.52!ZBTB38;;chr12:10875351..10875422,-!p4@CSDA!0.69!8.15!CSDA;;chr16:54964740..54964789,+!p1@IRX5!0.69!5.86!IRX5;;chr1:2985726..2985752,+!p2@PRDM16!0.69!3.91!PRDM16;;chr5:3595961..3595975,+!p3@IRX1!0.69!3.91!IRX1;;chr6:41562324..41562340,+!p16@FOXP4!0.69!3.91!FOXP4;;chr8:60031934..60031986,-!p6@TOX!0.69!3.91!TOX;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.67!42.68!GLIS2;;chr11:65687362..65687436,+!p3@DRAP1!0.67!19.22!DRAP1;;chr17:59477233..59477263,+!p1@TBX2!0.67!12.71!TBX2;;chr20:48807779..48807802,+!p10@CEBPB!0.67!6.52!CEBPB;;chr6:34204672..34204692,+!p1@HMGA1!0.66!466.88!HMGA1;;chr22:38598086..38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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002363;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000964;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002342;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003891;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157 | |||
|ffid_belonging_in_development=CL:0000133,CL:0000134,CL:0000221,CL:0000008 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor1.CNhs11337.11527-119I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor1.CNhs11337.11527-119I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor1.CNhs11337.11527-119I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor1.CNhs11337.11527-119I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor1.CNhs11337.11527-119I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11527-119I6 | |id=FF:11527-119I6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000084 | ||
|is_obsolete= | |||
|library_id=CNhs11337 | |||
|library_id_phase_based=2:CNhs11337 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11527 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GCCAAT.11527 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11527 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GCCAAT.11527 | |||
|name=Keratocytes, donor1 | |name=Keratocytes, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11337,LSID768,release014,COMPLETED | |profile_hcage=CNhs11337,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0378372948292622,0,0.142435313787245,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.147759072234396,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.419797445980759,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0212628584604581,0,0,0,-0.0625791608309809,-0.0300284446625304,0,0,0,0,-0.0980353512377064,-0.0772368331723335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.035133226293899,0,0,0,0,-0.0300789111476054,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC6525 | |rna_catalog_number=SC6525 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119I6 | |rna_tube_id=119I6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10005.GCCAAT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.00195554292725e-237!GO:0043231;intracellular membrane-bound organelle;6.39172862279961e-199!GO:0043227;membrane-bound organelle;1.66882863146803e-198!GO:0043226;organelle;8.27021300182794e-194!GO:0043229;intracellular organelle;1.4226563656165e-193!GO:0005737;cytoplasm;7.31448054344111e-178!GO:0044422;organelle part;2.00169223091004e-133!GO:0044446;intracellular organelle part;2.72208740244535e-132!GO:0044444;cytoplasmic part;7.96614001911382e-127!GO:0044238;primary metabolic process;8.15813358266927e-92!GO:0044237;cellular metabolic process;6.87889547247622e-91!GO:0032991;macromolecular complex;6.48285760246647e-90!GO:0030529;ribonucleoprotein complex;1.3614268321552e-86!GO:0043170;macromolecule metabolic process;2.3466665786332e-84!GO:0005634;nucleus;4.81492609108238e-83!GO:0043233;organelle lumen;2.81052233257627e-74!GO:0031974;membrane-enclosed lumen;2.81052233257627e-74!GO:0005739;mitochondrion;6.59006943962392e-73!GO:0003723;RNA binding;2.38370501922974e-69!GO:0044428;nuclear part;1.27202189055534e-68!GO:0005515;protein binding;2.81505460317958e-67!GO:0005840;ribosome;4.00831386178216e-53!GO:0010467;gene expression;3.38786371382665e-50!GO:0006412;translation;3.96421523752578e-50!GO:0043283;biopolymer metabolic process;4.08185500347073e-49!GO:0044429;mitochondrial part;1.83444284193696e-48!GO:0006396;RNA processing;5.79927261321292e-48!GO:0031090;organelle membrane;1.59347647463763e-47!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.01588968276582e-46!GO:0003735;structural constituent of ribosome;7.73217672377211e-46!GO:0019538;protein metabolic process;5.59465369251581e-45!GO:0016043;cellular component organization and biogenesis;1.18556429631858e-44!GO:0031981;nuclear lumen;4.44443499193522e-44!GO:0043234;protein complex;1.43564626729809e-42!GO:0009058;biosynthetic process;3.53434578535896e-42!GO:0044249;cellular biosynthetic process;4.5900938799232e-41!GO:0044260;cellular macromolecule metabolic process;1.84957659365968e-40!GO:0033279;ribosomal subunit;6.07227543742612e-40!GO:0044267;cellular protein metabolic process;8.32386134951515e-40!GO:0031967;organelle envelope;9.84885730851071e-40!GO:0031975;envelope;1.56033638893248e-39!GO:0009059;macromolecule biosynthetic process;1.87446436023269e-39!GO:0015031;protein transport;5.85186689841533e-39!GO:0033036;macromolecule localization;1.56051846121648e-38!GO:0016071;mRNA metabolic process;7.81193170690887e-36!GO:0045184;establishment of protein localization;1.54816246411131e-35!GO:0008104;protein localization;3.19335852254901e-35!GO:0005829;cytosol;2.2624966602839e-34!GO:0008380;RNA splicing;6.13745818056347e-33!GO:0006996;organelle organization and biogenesis;1.34200872139499e-32!GO:0005740;mitochondrial envelope;3.22918567215534e-31!GO:0046907;intracellular transport;6.84104717411359e-31!GO:0006397;mRNA processing;4.41468100989278e-30!GO:0065003;macromolecular complex assembly;6.42449506843365e-30!GO:0031966;mitochondrial membrane;2.23607930381369e-29!GO:0003676;nucleic acid binding;1.06257200979298e-28!GO:0019866;organelle inner membrane;9.80913011104406e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.05237773973589e-27!GO:0043228;non-membrane-bound organelle;1.29196583473694e-27!GO:0043232;intracellular non-membrane-bound organelle;1.29196583473694e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.25720383828357e-27!GO:0006886;intracellular protein transport;7.06096687685843e-27!GO:0005654;nucleoplasm;8.0600479115058e-27!GO:0022607;cellular component assembly;1.66991579788986e-26!GO:0005743;mitochondrial inner membrane;3.18361399744155e-26!GO:0006259;DNA metabolic process;3.18478279305344e-24!GO:0016070;RNA metabolic process;4.81415738294464e-24!GO:0005681;spliceosome;6.3805639330738e-24!GO:0044451;nucleoplasm part;2.93363157256468e-23!GO:0044445;cytosolic part;6.25058741311623e-22!GO:0015934;large ribosomal subunit;3.7744377649716e-21!GO:0031980;mitochondrial lumen;9.04523856307723e-21!GO:0005759;mitochondrial matrix;9.04523856307723e-21!GO:0006457;protein folding;3.56138133601787e-20!GO:0006119;oxidative phosphorylation;5.03708692738093e-20!GO:0007049;cell cycle;6.32614324681092e-20!GO:0015935;small ribosomal subunit;7.60888309498164e-20!GO:0005730;nucleolus;1.62752469574166e-19!GO:0008134;transcription factor binding;1.91595309301993e-19!GO:0044455;mitochondrial membrane part;3.99471235601807e-19!GO:0051649;establishment of cellular localization;2.01092253584209e-18!GO:0000166;nucleotide binding;3.88245802084455e-18!GO:0051641;cellular localization;4.03687263552581e-18!GO:0048770;pigment granule;5.96226112844897e-18!GO:0042470;melanosome;5.96226112844897e-18!GO:0005783;endoplasmic reticulum;6.22104458357641e-18!GO:0016874;ligase activity;2.66539148631749e-17!GO:0012505;endomembrane system;7.6654686442638e-17!GO:0005761;mitochondrial ribosome;4.01854896630834e-16!GO:0000313;organellar ribosome;4.01854896630834e-16!GO:0022402;cell cycle process;5.67628472359346e-16!GO:0016462;pyrophosphatase activity;7.40094000963397e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.94036719344657e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;1.14952097448808e-15!GO:0005746;mitochondrial respiratory chain;1.3933171782215e-15!GO:0051186;cofactor metabolic process;2.8432320257321e-15!GO:0017111;nucleoside-triphosphatase activity;3.73635378528641e-15!GO:0044432;endoplasmic reticulum part;3.73635378528641e-15!GO:0006512;ubiquitin cycle;5.1117260382594e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.53515380229535e-15!GO:0022618;protein-RNA complex assembly;1.47727431231971e-14!GO:0044265;cellular macromolecule catabolic process;3.77130118755829e-14!GO:0043285;biopolymer catabolic process;5.39478728814954e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.51362991677152e-14!GO:0051082;unfolded protein binding;7.19630275487377e-14!GO:0050136;NADH dehydrogenase (quinone) activity;8.47963345558162e-14!GO:0003954;NADH dehydrogenase activity;8.47963345558162e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;8.47963345558162e-14!GO:0000278;mitotic cell cycle;1.11351237667865e-13!GO:0008135;translation factor activity, nucleic acid binding;1.22102310600913e-13!GO:0006605;protein targeting;1.22244207489084e-13!GO:0051276;chromosome organization and biogenesis;1.87170376292611e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.46120764454846e-13!GO:0003712;transcription cofactor activity;3.72323244213001e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.15477596741494e-13!GO:0005794;Golgi apparatus;7.30191630612363e-13!GO:0009057;macromolecule catabolic process;9.37564103221024e-13!GO:0042254;ribosome biogenesis and assembly;9.64735087575559e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.24034044381195e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;1.30217654973807e-12!GO:0019941;modification-dependent protein catabolic process;1.3057106841477e-12!GO:0043632;modification-dependent macromolecule catabolic process;1.3057106841477e-12!GO:0032553;ribonucleotide binding;1.36624335411998e-12!GO:0032555;purine ribonucleotide binding;1.36624335411998e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.53670635339412e-12!GO:0000375;RNA splicing, via transesterification reactions;1.53670635339412e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.53670635339412e-12!GO:0017076;purine nucleotide binding;2.39950225476302e-12!GO:0044257;cellular protein catabolic process;2.40203956327849e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.95524720720168e-12!GO:0012501;programmed cell death;3.54738205787293e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.99990242116533e-12!GO:0042773;ATP synthesis coupled electron transport;3.99990242116533e-12!GO:0044248;cellular catabolic process;5.30371386384499e-12!GO:0006732;coenzyme metabolic process;5.30371386384499e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.87356445911629e-12!GO:0006915;apoptosis;6.42146468139541e-12!GO:0006323;DNA packaging;6.6581564536076e-12!GO:0030964;NADH dehydrogenase complex (quinone);6.96757484805903e-12!GO:0045271;respiratory chain complex I;6.96757484805903e-12!GO:0005747;mitochondrial respiratory chain complex I;6.96757484805903e-12!GO:0043412;biopolymer modification;1.51681855622855e-11!GO:0050794;regulation of cellular process;1.67285176163596e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.15926728685649e-11!GO:0048193;Golgi vesicle transport;2.60705682064936e-11!GO:0000074;regulation of progression through cell cycle;3.11182043537294e-11!GO:0051726;regulation of cell cycle;3.40415131212284e-11!GO:0006366;transcription from RNA polymerase II promoter;5.65813849350173e-11!GO:0005694;chromosome;6.03795923633996e-11!GO:0006974;response to DNA damage stimulus;6.282167147362e-11!GO:0016604;nuclear body;7.12322107495757e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.45140657284741e-11!GO:0006399;tRNA metabolic process;7.52113891213342e-11!GO:0030163;protein catabolic process;7.67807147196489e-11!GO:0009055;electron carrier activity;7.87906643449821e-11!GO:0008219;cell death;8.33089240066756e-11!GO:0016265;death;8.33089240066756e-11!GO:0065004;protein-DNA complex assembly;1.25012466152088e-10!GO:0005793;ER-Golgi intermediate compartment;1.38021232750533e-10!GO:0005789;endoplasmic reticulum membrane;1.47689384782378e-10!GO:0003743;translation initiation factor activity;2.30298601818503e-10!GO:0005524;ATP binding;3.0299066442303e-10!GO:0044427;chromosomal part;3.46874489677161e-10!GO:0006464;protein modification process;4.36654119581099e-10!GO:0032559;adenyl ribonucleotide binding;4.59989380105588e-10!GO:0005635;nuclear envelope;5.48606877306961e-10!GO:0000087;M phase of mitotic cell cycle;7.58287386986811e-10!GO:0007067;mitosis;8.0748535520733e-10!GO:0016192;vesicle-mediated transport;8.47603641578067e-10!GO:0030554;adenyl nucleotide binding;1.10265794842149e-09!GO:0048523;negative regulation of cellular process;1.15011774405727e-09!GO:0006913;nucleocytoplasmic transport;1.29045800995625e-09!GO:0051169;nuclear transport;2.14832656214472e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.22226505573736e-09!GO:0006163;purine nucleotide metabolic process;4.73551169275905e-09!GO:0008639;small protein conjugating enzyme activity;4.836245161277e-09!GO:0009259;ribonucleotide metabolic process;5.97470993050109e-09!GO:0006333;chromatin assembly or disassembly;6.14680733469985e-09!GO:0051188;cofactor biosynthetic process;6.66127452882193e-09!GO:0031965;nuclear membrane;6.96988451639961e-09!GO:0006413;translational initiation;7.20554541976666e-09!GO:0006364;rRNA processing;8.15379892611553e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;8.56394648813361e-09!GO:0022403;cell cycle phase;8.68290196050669e-09!GO:0009150;purine ribonucleotide metabolic process;9.52949926104699e-09!GO:0016607;nuclear speck;9.91768486076058e-09!GO:0004842;ubiquitin-protein ligase activity;1.15524161792292e-08!GO:0000785;chromatin;1.15524161792292e-08!GO:0016072;rRNA metabolic process;1.33737317072692e-08!GO:0006164;purine nucleotide biosynthetic process;1.36814197631806e-08!GO:0065002;intracellular protein transport across a membrane;1.62210812051056e-08!GO:0043687;post-translational protein modification;1.6837989478556e-08!GO:0042981;regulation of apoptosis;1.84948760273617e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.18869231409748e-08!GO:0044453;nuclear membrane part;2.18869231409748e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.20250313139161e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.20250313139161e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.20250313139161e-08!GO:0043067;regulation of programmed cell death;2.25716659839193e-08!GO:0019787;small conjugating protein ligase activity;2.32243469243889e-08!GO:0017038;protein import;2.39419584834666e-08!GO:0007005;mitochondrion organization and biogenesis;2.51342063491026e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.65179822573789e-08!GO:0009260;ribonucleotide biosynthetic process;2.8529673519313e-08!GO:0006446;regulation of translational initiation;2.92964016938749e-08!GO:0006281;DNA repair;3.33970920737159e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.72096528993903e-08!GO:0008565;protein transporter activity;3.78245687003273e-08!GO:0048519;negative regulation of biological process;4.01550163525544e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.44272825597552e-08!GO:0050789;regulation of biological process;5.03855691288718e-08!GO:0003713;transcription coactivator activity;5.86417131900813e-08!GO:0006334;nucleosome assembly;6.44923109984466e-08!GO:0006461;protein complex assembly;6.77245969208335e-08!GO:0031497;chromatin assembly;6.95812362644455e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.32761553652951e-08!GO:0009144;purine nucleoside triphosphate metabolic process;7.32761553652951e-08!GO:0043038;amino acid activation;7.49802629448238e-08!GO:0006418;tRNA aminoacylation for protein translation;7.49802629448238e-08!GO:0043039;tRNA aminoacylation;7.49802629448238e-08!GO:0009719;response to endogenous stimulus;7.94821102653565e-08!GO:0009141;nucleoside triphosphate metabolic process;8.37656022521002e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.7723297535764e-08!GO:0016563;transcription activator activity;1.02170146259752e-07!GO:0016881;acid-amino acid ligase activity;1.55034130721786e-07!GO:0005768;endosome;1.63595408959499e-07!GO:0015986;ATP synthesis coupled proton transport;1.65344591846658e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.65344591846658e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.78480460536632e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.78480460536632e-07!GO:0005667;transcription factor complex;2.06138014138833e-07!GO:0051301;cell division;2.30068633806221e-07!GO:0019222;regulation of metabolic process;2.49575517574469e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.03247505136262e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.03247505136262e-07!GO:0016568;chromatin modification;3.13806692672776e-07!GO:0042623;ATPase activity, coupled;3.16038318882565e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.62211412491822e-07!GO:0006888;ER to Golgi vesicle-mediated transport;3.76253234404887e-07!GO:0051246;regulation of protein metabolic process;4.56142533743071e-07!GO:0046034;ATP metabolic process;4.80879254568508e-07!GO:0009108;coenzyme biosynthetic process;6.70392039659498e-07!GO:0003924;GTPase activity;6.74401106368823e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;6.77017367507173e-07!GO:0019829;cation-transporting ATPase activity;6.8301080971515e-07!GO:0016887;ATPase activity;7.13299642346332e-07!GO:0005643;nuclear pore;7.13790014460228e-07!GO:0045786;negative regulation of progression through cell cycle;7.14686843111473e-07!GO:0009056;catabolic process;7.68080949035348e-07!GO:0009060;aerobic respiration;7.89547839285248e-07!GO:0005788;endoplasmic reticulum lumen;8.05412183828673e-07!GO:0016779;nucleotidyltransferase activity;8.39241291925976e-07!GO:0048475;coated membrane;8.52737498773766e-07!GO:0030117;membrane coat;8.52737498773766e-07!GO:0031324;negative regulation of cellular metabolic process;8.66737839347919e-07!GO:0000279;M phase;9.25161331678726e-07!GO:0008026;ATP-dependent helicase activity;9.34628871337921e-07!GO:0006260;DNA replication;1.32404201540723e-06!GO:0015630;microtubule cytoskeleton;1.44533988644764e-06!GO:0004386;helicase activity;1.46038142217516e-06!GO:0006754;ATP biosynthetic process;1.72900589607193e-06!GO:0006753;nucleoside phosphate metabolic process;1.72900589607193e-06!GO:0050657;nucleic acid transport;1.75505766189183e-06!GO:0051236;establishment of RNA localization;1.75505766189183e-06!GO:0050658;RNA transport;1.75505766189183e-06!GO:0045333;cellular respiration;1.92202881197426e-06!GO:0006403;RNA localization;1.97867423200626e-06!GO:0009117;nucleotide metabolic process;2.03103178583705e-06!GO:0016564;transcription repressor activity;2.10341782804803e-06!GO:0032446;protein modification by small protein conjugation;2.15610217029012e-06!GO:0030120;vesicle coat;2.62139899299884e-06!GO:0030662;coated vesicle membrane;2.62139899299884e-06!GO:0043069;negative regulation of programmed cell death;2.64428999670115e-06!GO:0005770;late endosome;2.66580256085274e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.82608398607158e-06!GO:0016740;transferase activity;2.93147412809407e-06!GO:0046930;pore complex;2.98838842733017e-06!GO:0043066;negative regulation of apoptosis;3.05260906802366e-06!GO:0006916;anti-apoptosis;3.07310215875625e-06!GO:0016567;protein ubiquitination;3.39565395590709e-06!GO:0005773;vacuole;4.0034228181046e-06!GO:0003697;single-stranded DNA binding;4.63074376038172e-06!GO:0045454;cell redox homeostasis;5.03021201130458e-06!GO:0045259;proton-transporting ATP synthase complex;5.877557513923e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.3016043231249e-06!GO:0005762;mitochondrial large ribosomal subunit;6.71743819898815e-06!GO:0000315;organellar large ribosomal subunit;6.71743819898815e-06!GO:0044440;endosomal part;7.143299918501e-06!GO:0010008;endosome membrane;7.143299918501e-06!GO:0003714;transcription corepressor activity;7.71672467773399e-06!GO:0006099;tricarboxylic acid cycle;1.23721243766554e-05!GO:0046356;acetyl-CoA catabolic process;1.23721243766554e-05!GO:0044431;Golgi apparatus part;1.27520128590256e-05!GO:0000314;organellar small ribosomal subunit;1.29726965241221e-05!GO:0005763;mitochondrial small ribosomal subunit;1.29726965241221e-05!GO:0008654;phospholipid biosynthetic process;1.30086036990977e-05!GO:0000245;spliceosome assembly;1.3882740096003e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.42789205306738e-05!GO:0051427;hormone receptor binding;1.5385085825197e-05!GO:0006752;group transfer coenzyme metabolic process;1.54944504494829e-05!GO:0051187;cofactor catabolic process;1.60972882883935e-05!GO:0016491;oxidoreductase activity;1.67597387338865e-05!GO:0006084;acetyl-CoA metabolic process;1.72115029063047e-05!GO:0006091;generation of precursor metabolites and energy;1.91063470759854e-05!GO:0009892;negative regulation of metabolic process;1.93173812126146e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.06451618882072e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.0989248420803e-05!GO:0009109;coenzyme catabolic process;2.13113277370233e-05!GO:0043566;structure-specific DNA binding;2.23698083951188e-05!GO:0016481;negative regulation of transcription;2.26738581377831e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.69574045425827e-05!GO:0035257;nuclear hormone receptor binding;3.30760443160651e-05!GO:0031323;regulation of cellular metabolic process;3.4471983372552e-05!GO:0043623;cellular protein complex assembly;3.51470269796741e-05!GO:0051170;nuclear import;4.37082816001363e-05!GO:0004298;threonine endopeptidase activity;4.48408954914556e-05!GO:0003899;DNA-directed RNA polymerase activity;4.48883418390121e-05!GO:0000323;lytic vacuole;4.52733435940028e-05!GO:0005764;lysosome;4.52733435940028e-05!GO:0006350;transcription;4.55144142105851e-05!GO:0016853;isomerase activity;4.62472225634971e-05!GO:0005905;coated pit;5.25619059812297e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.46969467336839e-05!GO:0051329;interphase of mitotic cell cycle;5.53623000014824e-05!GO:0051028;mRNA transport;5.70107493148823e-05!GO:0005525;GTP binding;5.93079462686952e-05!GO:0048522;positive regulation of cellular process;6.25515898776984e-05!GO:0016859;cis-trans isomerase activity;6.71019658530886e-05!GO:0006606;protein import into nucleus;6.87056389698561e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.24110574984578e-05!GO:0031252;leading edge;9.44187189615389e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.71443343548756e-05!GO:0045941;positive regulation of transcription;9.8270312310623e-05!GO:0006613;cotranslational protein targeting to membrane;9.96037364106436e-05!GO:0000151;ubiquitin ligase complex;0.000103119857311212!GO:0030176;integral to endoplasmic reticulum membrane;0.000114435501977692!GO:0030867;rough endoplasmic reticulum membrane;0.000115043049730524!GO:0065007;biological regulation;0.000116158935120786!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000126154303850905!GO:0005813;centrosome;0.000135618863669474!GO:0051789;response to protein stimulus;0.000139906872668979!GO:0006986;response to unfolded protein;0.000139906872668979!GO:0003724;RNA helicase activity;0.000147116249139602!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000150911415343084!GO:0000139;Golgi membrane;0.00015176022933341!GO:0010468;regulation of gene expression;0.00015958514024511!GO:0033116;ER-Golgi intermediate compartment membrane;0.000162285836144727!GO:0000786;nucleosome;0.000171791405405288!GO:0008632;apoptotic program;0.000173150689698972!GO:0031968;organelle outer membrane;0.000177827744094136!GO:0007006;mitochondrial membrane organization and biogenesis;0.00019332288241905!GO:0008033;tRNA processing;0.00020115356357422!GO:0005819;spindle;0.000218274624371848!GO:0006793;phosphorus metabolic process;0.000243136653725301!GO:0006796;phosphate metabolic process;0.000243136653725301!GO:0019867;outer membrane;0.000244821500846889!GO:0016023;cytoplasmic membrane-bound vesicle;0.000249023607428969!GO:0051325;interphase;0.000260037807465086!GO:0015980;energy derivation by oxidation of organic compounds;0.000263636978760818!GO:0006626;protein targeting to mitochondrion;0.000269400137941351!GO:0031072;heat shock protein binding;0.000281471083345981!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000286537054796574!GO:0006839;mitochondrial transport;0.000305725582099347!GO:0043681;protein import into mitochondrion;0.000308051231744932!GO:0031988;membrane-bound vesicle;0.000320371378675932!GO:0005798;Golgi-associated vesicle;0.000327238251821816!GO:0005815;microtubule organizing center;0.000331943764168535!GO:0005774;vacuolar membrane;0.000333159705723332!GO:0005741;mitochondrial outer membrane;0.000336435394702245!GO:0006402;mRNA catabolic process;0.000345038916433489!GO:0019899;enzyme binding;0.000360068228510713!GO:0032561;guanyl ribonucleotide binding;0.000368340165366453!GO:0019001;guanyl nucleotide binding;0.000368340165366453!GO:0008361;regulation of cell size;0.000405074477021148!GO:0008250;oligosaccharyl transferase complex;0.000443985213662154!GO:0046474;glycerophospholipid biosynthetic process;0.000445685993260305!GO:0045893;positive regulation of transcription, DNA-dependent;0.000447163768778413!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000487535015135124!GO:0045892;negative regulation of transcription, DNA-dependent;0.000520135337826868!GO:0031902;late endosome membrane;0.000548861206874986!GO:0005048;signal sequence binding;0.000550725934820104!GO:0043021;ribonucleoprotein binding;0.000577730136348063!GO:0016049;cell growth;0.000620779723907298!GO:0009165;nucleotide biosynthetic process;0.000627684651005386!GO:0005791;rough endoplasmic reticulum;0.000671819692149637!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000768798247256355!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000790828623695727!GO:0051168;nuclear export;0.000812041815987331!GO:0042802;identical protein binding;0.00100231398175759!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00100484820400296!GO:0044437;vacuolar part;0.0010332590332071!GO:0005765;lysosomal membrane;0.00106008997030671!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00111008832163133!GO:0006414;translational elongation;0.00115744094993532!GO:0031982;vesicle;0.00116288033032357!GO:0031410;cytoplasmic vesicle;0.00117555585203509!GO:0019843;rRNA binding;0.00123649756858321!GO:0030880;RNA polymerase complex;0.00128038724683026!GO:0018196;peptidyl-asparagine modification;0.00128038724683026!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00128038724683026!GO:0048487;beta-tubulin binding;0.00128235095349416!GO:0006401;RNA catabolic process;0.00130972228595084!GO:0065009;regulation of a molecular function;0.00131352381069841!GO:0046467;membrane lipid biosynthetic process;0.0013843522801207!GO:0005684;U2-dependent spliceosome;0.00142931466814516!GO:0051920;peroxiredoxin activity;0.00142931466814516!GO:0008186;RNA-dependent ATPase activity;0.00145340421483835!GO:0005769;early endosome;0.00146539169627131!GO:0016310;phosphorylation;0.00147542026832983!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00151908554399127!GO:0016787;hydrolase activity;0.00155145599606703!GO:0044452;nucleolar part;0.00165762909303605!GO:0030133;transport vesicle;0.00168159880973124!GO:0006352;transcription initiation;0.00174962986613814!GO:0016044;membrane organization and biogenesis;0.00175247306591786!GO:0007050;cell cycle arrest;0.00178814894205804!GO:0043284;biopolymer biosynthetic process;0.00189274268752019!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00194925610568951!GO:0030036;actin cytoskeleton organization and biogenesis;0.00201775719002554!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00203796991279292!GO:0006984;ER-nuclear signaling pathway;0.00206993064250676!GO:0005885;Arp2/3 protein complex;0.00208014566103882!GO:0046489;phosphoinositide biosynthetic process;0.00208014566103882!GO:0032774;RNA biosynthetic process;0.00208014566103882!GO:0006351;transcription, DNA-dependent;0.00211069829152103!GO:0043488;regulation of mRNA stability;0.00230684535930418!GO:0043487;regulation of RNA stability;0.00230684535930418!GO:0030118;clathrin coat;0.00230684535930418!GO:0004576;oligosaccharyl transferase activity;0.00244973911589439!GO:0044262;cellular carbohydrate metabolic process;0.0026475870923472!GO:0051087;chaperone binding;0.00272012886398331!GO:0006612;protein targeting to membrane;0.00274472413013434!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00284698923641185!GO:0016272;prefoldin complex;0.00287506807453486!GO:0048471;perinuclear region of cytoplasm;0.00293724942825502!GO:0001558;regulation of cell growth;0.00293724942825502!GO:0048518;positive regulation of biological process;0.00295043894687018!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00300434619859683!GO:0000428;DNA-directed RNA polymerase complex;0.00300434619859683!GO:0006595;polyamine metabolic process;0.00300434619859683!GO:0007051;spindle organization and biogenesis;0.00302496721460258!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00307141053556449!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00307141053556449!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00307141053556449!GO:0006383;transcription from RNA polymerase III promoter;0.00325033734286386!GO:0008637;apoptotic mitochondrial changes;0.00326975293414218!GO:0045449;regulation of transcription;0.00343499195107147!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00365431277084342!GO:0004004;ATP-dependent RNA helicase activity;0.00373918520669776!GO:0007010;cytoskeleton organization and biogenesis;0.00375456510905718!GO:0030132;clathrin coat of coated pit;0.00383650599291541!GO:0051098;regulation of binding;0.00405246343042482!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0040706933234459!GO:0007040;lysosome organization and biogenesis;0.00412678414796632!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00435175029946293!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00435175029946293!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00435175029946293!GO:0015002;heme-copper terminal oxidase activity;0.00435175029946293!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00435175029946293!GO:0004129;cytochrome-c oxidase activity;0.00435175029946293!GO:0006520;amino acid metabolic process;0.00457264398368806!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00460039101159096!GO:0006818;hydrogen transport;0.00478267916140975!GO:0016363;nuclear matrix;0.00490239482409753!GO:0007033;vacuole organization and biogenesis;0.00511611472927468!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00537365095983162!GO:0015992;proton transport;0.0054191013369534!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00549349968138078!GO:0015399;primary active transmembrane transporter activity;0.00549349968138078!GO:0051540;metal cluster binding;0.00551727233802262!GO:0051536;iron-sulfur cluster binding;0.00551727233802262!GO:0000075;cell cycle checkpoint;0.00558895980755317!GO:0048468;cell development;0.00601734605187921!GO:0016741;transferase activity, transferring one-carbon groups;0.0060299123331346!GO:0043065;positive regulation of apoptosis;0.00613938640262003!GO:0017166;vinculin binding;0.00622136211409018!GO:0000049;tRNA binding;0.00627550853877239!GO:0030521;androgen receptor signaling pathway;0.00632189388387081!GO:0006979;response to oxidative stress;0.00632817971770768!GO:0008168;methyltransferase activity;0.00655483291822944!GO:0030663;COPI coated vesicle membrane;0.00663547851635961!GO:0030126;COPI vesicle coat;0.00663547851635961!GO:0016197;endosome transport;0.00664176255604829!GO:0040029;regulation of gene expression, epigenetic;0.00671178846854231!GO:0043068;positive regulation of programmed cell death;0.00697930465345976!GO:0006405;RNA export from nucleus;0.00709639138279143!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.007167019460242!GO:0007243;protein kinase cascade;0.00716857377328111!GO:0051287;NAD binding;0.00740804061291405!GO:0019206;nucleoside kinase activity;0.00749468033810378!GO:0046966;thyroid hormone receptor binding;0.00754529458975497!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00774361600499706!GO:0015631;tubulin binding;0.00799535605903512!GO:0019752;carboxylic acid metabolic process;0.00812277066326943!GO:0046483;heterocycle metabolic process;0.00817986180685868!GO:0051101;regulation of DNA binding;0.00837559382023851!GO:0006082;organic acid metabolic process;0.00848126688410539!GO:0008139;nuclear localization sequence binding;0.00898256626291718!GO:0016251;general RNA polymerase II transcription factor activity;0.00923282278706559!GO:0030134;ER to Golgi transport vesicle;0.00936753914138797!GO:0006497;protein amino acid lipidation;0.0098713266872331!GO:0001872;zymosan binding;0.00997029278203644!GO:0001878;response to yeast;0.00997029278203644!GO:0005874;microtubule;0.00997725847471283!GO:0003684;damaged DNA binding;0.0100243119917638!GO:0007264;small GTPase mediated signal transduction;0.0101882459752202!GO:0006778;porphyrin metabolic process;0.0104334849414318!GO:0033013;tetrapyrrole metabolic process;0.0104334849414318!GO:0003729;mRNA binding;0.0105860706864704!GO:0048500;signal recognition particle;0.0106350150761365!GO:0051252;regulation of RNA metabolic process;0.010871041445794!GO:0000209;protein polyubiquitination;0.010871041445794!GO:0008312;7S RNA binding;0.0108980310932551!GO:0001836;release of cytochrome c from mitochondria;0.0109380678788173!GO:0006891;intra-Golgi vesicle-mediated transport;0.0112777078667881!GO:0051539;4 iron, 4 sulfur cluster binding;0.011461225537639!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0116853188590245!GO:0006509;membrane protein ectodomain proteolysis;0.0118469981796083!GO:0033619;membrane protein proteolysis;0.0118469981796083!GO:0030137;COPI-coated vesicle;0.0120022495504256!GO:0008652;amino acid biosynthetic process;0.0120022495504256!GO:0030029;actin filament-based process;0.0120022495504256!GO:0030503;regulation of cell redox homeostasis;0.0120404117453162!GO:0003702;RNA polymerase II transcription factor activity;0.0121023730115076!GO:0030658;transport vesicle membrane;0.0130691564090355!GO:0006740;NADPH regeneration;0.0131349098286506!GO:0006098;pentose-phosphate shunt;0.0131349098286506!GO:0007346;regulation of progression through mitotic cell cycle;0.0133859945748477!GO:0006338;chromatin remodeling;0.0134184832530643!GO:0032508;DNA duplex unwinding;0.0135026136303349!GO:0032392;DNA geometric change;0.0135026136303349!GO:0007034;vacuolar transport;0.0135571781126762!GO:0003682;chromatin binding;0.0135865564380427!GO:0008610;lipid biosynthetic process;0.0136292750557858!GO:0042158;lipoprotein biosynthetic process;0.0137174793042832!GO:0030119;AP-type membrane coat adaptor complex;0.0137174793042832!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0137174793042832!GO:0003746;translation elongation factor activity;0.0137591576614139!GO:0003711;transcription elongation regulator activity;0.0143856895987376!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.014444432879799!GO:0050662;coenzyme binding;0.0144836513920054!GO:0035258;steroid hormone receptor binding;0.0148801626824477!GO:0000082;G1/S transition of mitotic cell cycle;0.0151192473159934!GO:0045792;negative regulation of cell size;0.0151787862764096!GO:0006506;GPI anchor biosynthetic process;0.0156692344334851!GO:0006289;nucleotide-excision repair;0.0160237516205504!GO:0000775;chromosome, pericentric region;0.0160939727970562!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0163195293539142!GO:0045047;protein targeting to ER;0.0163195293539142!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0166067635774182!GO:0010257;NADH dehydrogenase complex assembly;0.0166067635774182!GO:0033108;mitochondrial respiratory chain complex assembly;0.0166067635774182!GO:0022890;inorganic cation transmembrane transporter activity;0.016840224249177!GO:0006779;porphyrin biosynthetic process;0.016840224249177!GO:0033014;tetrapyrrole biosynthetic process;0.016840224249177!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0169044393847691!GO:0030145;manganese ion binding;0.0169112421415284!GO:0006220;pyrimidine nucleotide metabolic process;0.0169365967152846!GO:0035035;histone acetyltransferase binding;0.0172304047749658!GO:0006354;RNA elongation;0.0173035499094138!GO:0030433;ER-associated protein catabolic process;0.0174454832280633!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0174454832280633!GO:0042168;heme metabolic process;0.0174454832280633!GO:0005869;dynactin complex;0.0175133541304476!GO:0006650;glycerophospholipid metabolic process;0.0175706383050185!GO:0031272;regulation of pseudopodium formation;0.0184755638940734!GO:0031269;pseudopodium formation;0.0184755638940734!GO:0031344;regulation of cell projection organization and biogenesis;0.0184755638940734!GO:0031268;pseudopodium organization and biogenesis;0.0184755638940734!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0184755638940734!GO:0031274;positive regulation of pseudopodium formation;0.0184755638940734!GO:0030131;clathrin adaptor complex;0.0192395988983553!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0192632500275823!GO:0009451;RNA modification;0.0194462127341843!GO:0005862;muscle thin filament tropomyosin;0.0197166494091692!GO:0008538;proteasome activator activity;0.0197166494091692!GO:0006261;DNA-dependent DNA replication;0.0197512526522462!GO:0043281;regulation of caspase activity;0.0198069679483022!GO:0007021;tubulin folding;0.0198322908685145!GO:0005637;nuclear inner membrane;0.0201290289739434!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0203781075839945!GO:0030308;negative regulation of cell growth;0.0204200222692237!GO:0030041;actin filament polymerization;0.0214534111281509!GO:0030127;COPII vesicle coat;0.0214802512029043!GO:0012507;ER to Golgi transport vesicle membrane;0.0214802512029043!GO:0000096;sulfur amino acid metabolic process;0.0215926201721101!GO:0000123;histone acetyltransferase complex;0.0218622192741168!GO:0006417;regulation of translation;0.0224408820701927!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0227238579693021!GO:0001726;ruffle;0.0227287265574412!GO:0007088;regulation of mitosis;0.022902231848384!GO:0008286;insulin receptor signaling pathway;0.0236630292433847!GO:0046426;negative regulation of JAK-STAT cascade;0.0238046386962942!GO:0030508;thiol-disulfide exchange intermediate activity;0.0238261479177392!GO:0031301;integral to organelle membrane;0.0239253162038547!GO:0006505;GPI anchor metabolic process;0.0241568684550309!GO:0000059;protein import into nucleus, docking;0.0241568684550309!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0243857929879944!GO:0009893;positive regulation of metabolic process;0.0249409279910681!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0251580596722358!GO:0016584;nucleosome positioning;0.0253016359031629!GO:0022408;negative regulation of cell-cell adhesion;0.025354317593346!GO:0006355;regulation of transcription, DNA-dependent;0.0254985397620624!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0263218953552694!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0265365725723036!GO:0030518;steroid hormone receptor signaling pathway;0.0266828612153013!GO:0030027;lamellipodium;0.0267088851088086!GO:0040008;regulation of growth;0.0269421864719296!GO:0051775;response to redox state;0.0272543189169324!GO:0006980;redox signal response;0.0272543189169324!GO:0006783;heme biosynthetic process;0.0272543189169324!GO:0016126;sterol biosynthetic process;0.0276484445864046!GO:0043022;ribosome binding;0.0283170065923141!GO:0048037;cofactor binding;0.0283170065923141!GO:0051059;NF-kappaB binding;0.0286700476972355!GO:0030660;Golgi-associated vesicle membrane;0.0287095492969666!GO:0030968;unfolded protein response;0.0288039427125955!GO:0005100;Rho GTPase activator activity;0.0289040259995758!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0293064207646447!GO:0050811;GABA receptor binding;0.0303164789270766!GO:0030125;clathrin vesicle coat;0.0303164789270766!GO:0030665;clathrin coated vesicle membrane;0.0303164789270766!GO:0006739;NADP metabolic process;0.0307649485899622!GO:0000910;cytokinesis;0.0314395867784343!GO:0031529;ruffle organization and biogenesis;0.0314737384113829!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.031824863989213!GO:0004177;aminopeptidase activity;0.031884381663292!GO:0004674;protein serine/threonine kinase activity;0.031895087960284!GO:0043492;ATPase activity, coupled to movement of substances;0.0324633591163288!GO:0009303;rRNA transcription;0.0331008180925023!GO:0003678;DNA helicase activity;0.0331845962261992!GO:0006611;protein export from nucleus;0.0331845962261992!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0336553241992385!GO:0051128;regulation of cellular component organization and biogenesis;0.0336553241992385!GO:0005758;mitochondrial intermembrane space;0.0336591028780774!GO:0045926;negative regulation of growth;0.033782751457808!GO:0043433;negative regulation of transcription factor activity;0.033945379287434!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0341147979379009!GO:0004680;casein kinase activity;0.0346997698625144!GO:0009112;nucleobase metabolic process;0.0346997698625144!GO:0031418;L-ascorbic acid binding;0.035208155832845!GO:0005669;transcription factor TFIID complex;0.0353297594323128!GO:0015036;disulfide oxidoreductase activity;0.0357779134113607!GO:0007041;lysosomal transport;0.0361579348980514!GO:0006458;'de novo' protein folding;0.0361579348980514!GO:0051084;'de novo' posttranslational protein folding;0.0361579348980514!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0363525679821347!GO:0030833;regulation of actin filament polymerization;0.036625833552299!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.037249014777972!GO:0003756;protein disulfide isomerase activity;0.0375247562604411!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0375247562604411!GO:0030384;phosphoinositide metabolic process;0.0378664946218478!GO:0046128;purine ribonucleoside metabolic process;0.0378910852751792!GO:0042278;purine nucleoside metabolic process;0.0378910852751792!GO:0043414;biopolymer methylation;0.0380154605857047!GO:0008287;protein serine/threonine phosphatase complex;0.0381136378435047!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0382099366034847!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0384032905879355!GO:0031124;mRNA 3'-end processing;0.0385526842663527!GO:0004527;exonuclease activity;0.0385755638829663!GO:0000118;histone deacetylase complex;0.0386292231860468!GO:0022415;viral reproductive process;0.038889447729517!GO:0048011;nerve growth factor receptor signaling pathway;0.0391286046253083!GO:0006917;induction of apoptosis;0.0393475569638991!GO:0004722;protein serine/threonine phosphatase activity;0.0394390111434491!GO:0050790;regulation of catalytic activity;0.0397428807693816!GO:0006564;L-serine biosynthetic process;0.039836993531265!GO:0006268;DNA unwinding during replication;0.0407018978089088!GO:0043189;H4/H2A histone acetyltransferase complex;0.0408040290025498!GO:0031970;organelle envelope lumen;0.0411602219090878!GO:0046983;protein dimerization activity;0.0412757150470749!GO:0016791;phosphoric monoester hydrolase activity;0.0414755505989568!GO:0042809;vitamin D receptor binding;0.0425661374157208!GO:0033559;unsaturated fatty acid metabolic process;0.0425661374157208!GO:0006636;unsaturated fatty acid biosynthetic process;0.0425661374157208!GO:0048144;fibroblast proliferation;0.0432739990098112!GO:0048145;regulation of fibroblast proliferation;0.0432739990098112!GO:0035303;regulation of dephosphorylation;0.0434972719119702!GO:0031543;peptidyl-proline dioxygenase activity;0.0435388591174159!GO:0000287;magnesium ion binding;0.0437443961110177!GO:0031371;ubiquitin conjugating enzyme complex;0.0440589486191926!GO:0030496;midbody;0.0445893792448982!GO:0042393;histone binding;0.0448954909737664!GO:0003677;DNA binding;0.0451799897022588!GO:0051348;negative regulation of transferase activity;0.0456109892514612!GO:0000792;heterochromatin;0.0456109892514612!GO:0033673;negative regulation of kinase activity;0.0456109892514612!GO:0006469;negative regulation of protein kinase activity;0.0456109892514612!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0459582896130067!GO:0001953;negative regulation of cell-matrix adhesion;0.0466624829660234!GO:0008180;signalosome;0.046718898985518!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.046718898985518!GO:0006643;membrane lipid metabolic process;0.0467304564781548!GO:0009967;positive regulation of signal transduction;0.0470517316530593!GO:0008537;proteasome activator complex;0.0470517316530593!GO:0016860;intramolecular oxidoreductase activity;0.047663309675098!GO:0006118;electron transport;0.0477156516868035!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0479853582061946!GO:0012502;induction of programmed cell death;0.0482309711489304!GO:0006376;mRNA splice site selection;0.0484923379148145!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0484923379148145!GO:0003690;double-stranded DNA binding;0.049161971986952!GO:0009116;nucleoside metabolic process;0.0495521656437568 | |||
|sample_id=11527 | |sample_id=11527 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=eye | |sample_tissue=eye | ||
|top_motifs=bHLH_family:1.82063488014;GTF2A1,2:1.44789600353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37079695304;LHX3,4:1.2956175113;HOX{A6,A7,B6,B7}:1.2654545821;RXR{A,B,G}:1.24351315152;ZNF238:1.20178506656;EBF1:1.10589218577;CRX:1.00339842039;NR1H4:0.966426681978;TP53:0.960654607899;HES1:0.843849667591;TBX4,5:0.81979253853;TFAP4:0.817377606751;NR3C1:0.812042649082;CEBPA,B_DDIT3:0.807824448642;GZF1:0.807660402501;ESR1:0.79494971077;NFIX:0.771838533655;TLX1..3_NFIC{dimer}:0.758588825838;PBX1:0.69184879407;HOX{A5,B5}:0.652455446153;ZNF148:0.649977315876;TEF:0.623208973653;HLF:0.620722476443;TFAP2{A,C}:0.573085788792;STAT5{A,B}:0.548834159382;POU1F1:0.477255173176;SOX17:0.453422976384;PRRX1,2:0.443046800566;RREB1:0.441305578336;GFI1B:0.438878827278;RXRA_VDR{dimer}:0.433340248026;TFDP1:0.381462180952;TEAD1:0.380873299042;ZIC1..3:0.370994883693;IRF7:0.370555455423;LEF1_TCF7_TCF7L1,2:0.368763529222;SOX5:0.367452479748;POU2F1..3:0.358037723419;ZNF423:0.35588325796;ZBTB6:0.34975134338;PATZ1:0.348505442083;NKX2-2,8:0.344445430127;EN1,2:0.33961375303;GLI1..3:0.32984512687;NR5A1,2:0.327770509834;TFAP2B:0.326660887797;HAND1,2:0.309797833357;FOXA2:0.28508329586;ELK1,4_GABP{A,B1}:0.277434801165;GTF2I:0.259041912365;NR6A1:0.207547776393;PDX1:0.203330774231;MYB:0.198401060049;NFE2:0.192307514542;GFI1:0.188460178121;YY1:0.183916085786;NKX2-3_NKX2-5:0.180618508807;BACH2:0.153145130047;NANOG:0.149411627449;TAL1_TCF{3,4,12}:0.143207322137;KLF4:0.142960970183;XBP1:0.133909997766;HNF4A_NR2F1,2:0.129807950058;FOX{F1,F2,J1}:0.124263348012;RORA:0.0915474898546;NFE2L2:0.0883434727416;HIC1:0.0855539431078;FOX{I1,J2}:0.0782738694301;ALX1:0.0755271251692;ADNP_IRX_SIX_ZHX:0.0646225903368;LMO2:0.0621647026646;PAX8:0.0590668771714;FOS_FOS{B,L1}_JUN{B,D}:0.0586335249621;PAX5:0.0585976882847;TFCP2:0.0570929356366;XCPE1{core}:0.0511376214612;NKX3-1:0.05001380567;MZF1:0.0411188298881;CUX2:0.0394331576706;MYBL2:0.0376985225248;MYOD1:0.0303632032723;FOSL2:0.0268036486007;SRF:0.0215346129056;PAX1,9:0.0167080897802;GATA6:0.00776711762362;NFE2L1:0.00632605887996;ONECUT1,2:-0.00666900374878;SP1:-0.00671708601258;PAX3,7:-0.0190252959438;RFX1:-0.0218699493489;HNF1A:-0.0309358345408;TOPORS:-0.0347188470856;JUN:-0.0365016755836;ZNF143:-0.0449480844283;HIF1A:-0.0503469395553;AHR_ARNT_ARNT2:-0.0602791209705;IRF1,2:-0.061023724554;HOX{A4,D4}:-0.0928396743025;CDX1,2,4:-0.0941942542045;AR:-0.0942104104363;SREBF1,2:-0.111473378725;NFIL3:-0.113459821549;FOXM1:-0.117956638577;ALX4:-0.121493994755;IKZF1:-0.121768857186;TBP:-0.125556857796;MTF1:-0.139053100824;MED-1{core}:-0.163911685068;NFATC1..3:-0.174720957696;STAT2,4,6:-0.175117630506;RUNX1..3:-0.17735854883;TLX2:-0.188458044472;SPZ1:-0.191147704643;ESRRA:-0.199244102818;VSX1,2:-0.20835293325;NFKB1_REL_RELA:-0.208693175592;NFY{A,B,C}:-0.211006244284;MAZ:-0.211394235937;MEF2{A,B,C,D}:-0.225011186894;HOXA9_MEIS1:-0.254017103587;CDC5L:-0.262002317708;UFEwm:-0.264869398211;EVI1:-0.267325303047;SNAI1..3:-0.27671094031;CREB1:-0.279623960096;FOXD3:-0.284149212725;FOXO1,3,4:-0.288684383828;PRDM1:-0.289723682117;ATF6:-0.292822119838;GCM1,2:-0.311551303995;MTE{core}:-0.315971492239;OCT4_SOX2{dimer}:-0.325855840626;TGIF1:-0.337905798593;REST:-0.345510109294;ATF4:-0.35301978053;MYFfamily:-0.36423982283;POU5F1:-0.372426538551;HBP1_HMGB_SSRP1_UBTF:-0.374761084008;NKX6-1,2:-0.378038745355;POU6F1:-0.380329855017;SOX{8,9,10}:-0.386390910395;NHLH1,2:-0.403244758875;POU3F1..4:-0.435075941013;RFX2..5_RFXANK_RFXAP:-0.450889907997;SPIB:-0.451992542039;BREu{core}:-0.46097892896;ATF2:-0.469314312428;NKX2-1,4:-0.495438973813;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.52047565194;FOXQ1:-0.521002409855;AIRE:-0.521161117154;E2F1..5:-0.524292090982;PPARG:-0.529094067798;NANOG{mouse}:-0.530482409369;SPI1:-0.530802446966;NRF1:-0.546779740237;ARID5B:-0.553642556514;ETS1,2:-0.579476944103;EGR1..3:-0.588135019192;ZNF384:-0.59369327071;DBP:-0.59825991719;T:-0.604665944574;PAX4:-0.60558601316;NKX3-2:-0.62749149718;FOX{D1,D2}:-0.634966698258;HMX1:-0.636374943603;ATF5_CREB3:-0.657933212555;BPTF:-0.661350052034;ZEB1:-0.67037001181;FOXL1:-0.686491171142;FOXP3:-0.712376978745;HMGA1,2:-0.727115741758;SOX2:-0.727368784362;PITX1..3:-0.734616633154;ELF1,2,4:-0.762939337651;PAX6:-0.812151196896;DMAP1_NCOR{1,2}_SMARC:-0.815491323065;STAT1,3:-0.86899839862;EP300:-0.880369300438;RBPJ:-0.899753842227;FOXP1:-0.923243083764;ZFP161:-0.933812277475;MAFB:-0.953577118925;PAX2:-0.959086260827;SMAD1..7,9:-1.00698173214;GATA4:-1.03303079221;HSF1,2:-1.03911305831;IKZF2:-1.14811816189;ZBTB16:-1.32562024065;FOXN1:-1.81931146469 | |top_motifs=bHLH_family:1.82063488014;GTF2A1,2:1.44789600353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37079695304;LHX3,4:1.2956175113;HOX{A6,A7,B6,B7}:1.2654545821;RXR{A,B,G}:1.24351315152;ZNF238:1.20178506656;EBF1:1.10589218577;CRX:1.00339842039;NR1H4:0.966426681978;TP53:0.960654607899;HES1:0.843849667591;TBX4,5:0.81979253853;TFAP4:0.817377606751;NR3C1:0.812042649082;CEBPA,B_DDIT3:0.807824448642;GZF1:0.807660402501;ESR1:0.79494971077;NFIX:0.771838533655;TLX1..3_NFIC{dimer}:0.758588825838;PBX1:0.69184879407;HOX{A5,B5}:0.652455446153;ZNF148:0.649977315876;TEF:0.623208973653;HLF:0.620722476443;TFAP2{A,C}:0.573085788792;STAT5{A,B}:0.548834159382;POU1F1:0.477255173176;SOX17:0.453422976384;PRRX1,2:0.443046800566;RREB1:0.441305578336;GFI1B:0.438878827278;RXRA_VDR{dimer}:0.433340248026;TFDP1:0.381462180952;TEAD1:0.380873299042;ZIC1..3:0.370994883693;IRF7:0.370555455423;LEF1_TCF7_TCF7L1,2:0.368763529222;SOX5:0.367452479748;POU2F1..3:0.358037723419;ZNF423:0.35588325796;ZBTB6:0.34975134338;PATZ1:0.348505442083;NKX2-2,8:0.344445430127;EN1,2:0.33961375303;GLI1..3:0.32984512687;NR5A1,2:0.327770509834;TFAP2B:0.326660887797;HAND1,2:0.309797833357;FOXA2:0.28508329586;ELK1,4_GABP{A,B1}:0.277434801165;GTF2I:0.259041912365;NR6A1:0.207547776393;PDX1:0.203330774231;MYB:0.198401060049;NFE2:0.192307514542;GFI1:0.188460178121;YY1:0.183916085786;NKX2-3_NKX2-5:0.180618508807;BACH2:0.153145130047;NANOG:0.149411627449;TAL1_TCF{3,4,12}:0.143207322137;KLF4:0.142960970183;XBP1:0.133909997766;HNF4A_NR2F1,2:0.129807950058;FOX{F1,F2,J1}:0.124263348012;RORA:0.0915474898546;NFE2L2:0.0883434727416;HIC1:0.0855539431078;FOX{I1,J2}:0.0782738694301;ALX1:0.0755271251692;ADNP_IRX_SIX_ZHX:0.0646225903368;LMO2:0.0621647026646;PAX8:0.0590668771714;FOS_FOS{B,L1}_JUN{B,D}:0.0586335249621;PAX5:0.0585976882847;TFCP2:0.0570929356366;XCPE1{core}:0.0511376214612;NKX3-1:0.05001380567;MZF1:0.0411188298881;CUX2:0.0394331576706;MYBL2:0.0376985225248;MYOD1:0.0303632032723;FOSL2:0.0268036486007;SRF:0.0215346129056;PAX1,9:0.0167080897802;GATA6:0.00776711762362;NFE2L1:0.00632605887996;ONECUT1,2:-0.00666900374878;SP1:-0.00671708601258;PAX3,7:-0.0190252959438;RFX1:-0.0218699493489;HNF1A:-0.0309358345408;TOPORS:-0.0347188470856;JUN:-0.0365016755836;ZNF143:-0.0449480844283;HIF1A:-0.0503469395553;AHR_ARNT_ARNT2:-0.0602791209705;IRF1,2:-0.061023724554;HOX{A4,D4}:-0.0928396743025;CDX1,2,4:-0.0941942542045;AR:-0.0942104104363;SREBF1,2:-0.111473378725;NFIL3:-0.113459821549;FOXM1:-0.117956638577;ALX4:-0.121493994755;IKZF1:-0.121768857186;TBP:-0.125556857796;MTF1:-0.139053100824;MED-1{core}:-0.163911685068;NFATC1..3:-0.174720957696;STAT2,4,6:-0.175117630506;RUNX1..3:-0.17735854883;TLX2:-0.188458044472;SPZ1:-0.191147704643;ESRRA:-0.199244102818;VSX1,2:-0.20835293325;NFKB1_REL_RELA:-0.208693175592;NFY{A,B,C}:-0.211006244284;MAZ:-0.211394235937;MEF2{A,B,C,D}:-0.225011186894;HOXA9_MEIS1:-0.254017103587;CDC5L:-0.262002317708;UFEwm:-0.264869398211;EVI1:-0.267325303047;SNAI1..3:-0.27671094031;CREB1:-0.279623960096;FOXD3:-0.284149212725;FOXO1,3,4:-0.288684383828;PRDM1:-0.289723682117;ATF6:-0.292822119838;GCM1,2:-0.311551303995;MTE{core}:-0.315971492239;OCT4_SOX2{dimer}:-0.325855840626;TGIF1:-0.337905798593;REST:-0.345510109294;ATF4:-0.35301978053;MYFfamily:-0.36423982283;POU5F1:-0.372426538551;HBP1_HMGB_SSRP1_UBTF:-0.374761084008;NKX6-1,2:-0.378038745355;POU6F1:-0.380329855017;SOX{8,9,10}:-0.386390910395;NHLH1,2:-0.403244758875;POU3F1..4:-0.435075941013;RFX2..5_RFXANK_RFXAP:-0.450889907997;SPIB:-0.451992542039;BREu{core}:-0.46097892896;ATF2:-0.469314312428;NKX2-1,4:-0.495438973813;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.52047565194;FOXQ1:-0.521002409855;AIRE:-0.521161117154;E2F1..5:-0.524292090982;PPARG:-0.529094067798;NANOG{mouse}:-0.530482409369;SPI1:-0.530802446966;NRF1:-0.546779740237;ARID5B:-0.553642556514;ETS1,2:-0.579476944103;EGR1..3:-0.588135019192;ZNF384:-0.59369327071;DBP:-0.59825991719;T:-0.604665944574;PAX4:-0.60558601316;NKX3-2:-0.62749149718;FOX{D1,D2}:-0.634966698258;HMX1:-0.636374943603;ATF5_CREB3:-0.657933212555;BPTF:-0.661350052034;ZEB1:-0.67037001181;FOXL1:-0.686491171142;FOXP3:-0.712376978745;HMGA1,2:-0.727115741758;SOX2:-0.727368784362;PITX1..3:-0.734616633154;ELF1,2,4:-0.762939337651;PAX6:-0.812151196896;DMAP1_NCOR{1,2}_SMARC:-0.815491323065;STAT1,3:-0.86899839862;EP300:-0.880369300438;RBPJ:-0.899753842227;FOXP1:-0.923243083764;ZFP161:-0.933812277475;MAFB:-0.953577118925;PAX2:-0.959086260827;SMAD1..7,9:-1.00698173214;GATA4:-1.03303079221;HSF1,2:-1.03911305831;IKZF2:-1.14811816189;ZBTB16:-1.32562024065;FOXN1:-1.81931146469 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11527-119I6;search_select_hide=table117:FF:11527-119I6 | |||
}} | }} | ||
Latest revision as of 18:06, 4 June 2020
| Name: | Keratocytes, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11337 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11337
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11337
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.844 |
| 10 | 10 | 0.792 |
| 100 | 100 | 0.61 |
| 101 | 101 | 0.657 |
| 102 | 102 | 0.42 |
| 103 | 103 | 0.434 |
| 104 | 104 | 0.0537 |
| 105 | 105 | 0.0859 |
| 106 | 106 | 0.0711 |
| 107 | 107 | 0.0131 |
| 108 | 108 | 0.841 |
| 109 | 109 | 0.0106 |
| 11 | 11 | 0.0372 |
| 110 | 110 | 0.101 |
| 111 | 111 | 0.994 |
| 112 | 112 | 0.63 |
| 113 | 113 | 0.263 |
| 114 | 114 | 0.73 |
| 115 | 115 | 0.815 |
| 116 | 116 | 0.0657 |
| 117 | 117 | 0.31 |
| 118 | 118 | 0.516 |
| 119 | 119 | 0.928 |
| 12 | 12 | 0.731 |
| 120 | 120 | 0.598 |
| 121 | 121 | 0.778 |
| 122 | 122 | 0.311 |
| 123 | 123 | 0.189 |
| 124 | 124 | 0.576 |
| 125 | 125 | 0.479 |
| 126 | 126 | 0.99 |
| 127 | 127 | 0.901 |
| 128 | 128 | 0.555 |
| 129 | 129 | 0.749 |
| 13 | 13 | 0.302 |
| 130 | 130 | 0.105 |
| 131 | 131 | 0.72 |
| 132 | 132 | 0.444 |
| 133 | 133 | 0.0112 |
| 134 | 134 | 0.216 |
| 135 | 135 | 0.948 |
| 136 | 136 | 0.807 |
| 137 | 137 | 0.258 |
| 138 | 138 | 0.74 |
| 139 | 139 | 0.947 |
| 14 | 14 | 0.836 |
| 140 | 140 | 0.337 |
| 141 | 141 | 0.659 |
| 142 | 142 | 0.237 |
| 143 | 143 | 0.482 |
| 144 | 144 | 0.962 |
| 145 | 145 | 0.318 |
| 146 | 146 | 0.0451 |
| 147 | 147 | 0.576 |
| 148 | 148 | 0.863 |
| 149 | 149 | 0.924 |
| 15 | 15 | 0.49 |
| 150 | 150 | 0.259 |
| 151 | 151 | 0.661 |
| 152 | 152 | 0.0583 |
| 153 | 153 | 0.347 |
| 154 | 154 | 0.166 |
| 155 | 155 | 0.32 |
| 156 | 156 | 0.358 |
| 157 | 157 | 0.0486 |
| 158 | 158 | 0.52 |
| 159 | 159 | 0.579 |
| 16 | 16 | 0.186 |
| 160 | 160 | 0.0436 |
| 161 | 161 | 0.607 |
| 162 | 162 | 0.0439 |
| 163 | 163 | 0.809 |
| 164 | 164 | 0.368 |
| 165 | 165 | 0.236 |
| 166 | 166 | 0.675 |
| 167 | 167 | 0.897 |
| 168 | 168 | 0.92 |
| 169 | 169 | 0.1 |
| 17 | 17 | 0.161 |
| 18 | 18 | 6.73356e-4 |
| 19 | 19 | 0.118 |
| 2 | 2 | 0.55 |
| 20 | 20 | 0.536 |
| 21 | 21 | 0.335 |
| 22 | 22 | 0.135 |
| 23 | 23 | 0.257 |
| 24 | 24 | 0.249 |
| 25 | 25 | 0.317 |
| 26 | 26 | 0.184 |
| 27 | 27 | 0.612 |
| 28 | 28 | 0.507 |
| 29 | 29 | 0.886 |
| 3 | 3 | 0.393 |
| 30 | 30 | 0.172 |
| 31 | 31 | 0.252 |
| 32 | 32 | 0.175 |
| 33 | 33 | 0.0796 |
| 34 | 34 | 0.0873 |
| 35 | 35 | 0.344 |
| 36 | 36 | 0.894 |
| 37 | 37 | 0.0469 |
| 38 | 38 | 0.663 |
| 39 | 39 | 0.395 |
| 4 | 4 | 0.635 |
| 40 | 40 | 0.0333 |
| 41 | 41 | 0.483 |
| 42 | 42 | 0.565 |
| 43 | 43 | 0.0842 |
| 44 | 44 | 0.147 |
| 45 | 45 | 0.252 |
| 46 | 46 | 0.174 |
| 47 | 47 | 0.16 |
| 48 | 48 | 0.0694 |
| 49 | 49 | 0.0648 |
| 5 | 5 | 0.575 |
| 50 | 50 | 0.235 |
| 51 | 51 | 0.342 |
| 52 | 52 | 0.447 |
| 53 | 53 | 0.667 |
| 54 | 54 | 0.337 |
| 55 | 55 | 0.636 |
| 56 | 56 | 0.128 |
| 57 | 57 | 0.318 |
| 58 | 58 | 0.329 |
| 59 | 59 | 0.0437 |
| 6 | 6 | 0.837 |
| 60 | 60 | 0.137 |
| 61 | 61 | 0.226 |
| 62 | 62 | 0.671 |
| 63 | 63 | 0.159 |
| 64 | 64 | 0.0631 |
| 65 | 65 | 0.0326 |
| 66 | 66 | 0.248 |
| 67 | 67 | 0.889 |
| 68 | 68 | 0.207 |
| 69 | 69 | 0.0364 |
| 7 | 7 | 0.986 |
| 70 | 70 | 0.00569 |
| 71 | 71 | 0.474 |
| 72 | 72 | 0.472 |
| 73 | 73 | 0.0258 |
| 74 | 74 | 0.963 |
| 75 | 75 | 0.375 |
| 76 | 76 | 0.902 |
| 77 | 77 | 0.018 |
| 78 | 78 | 0.595 |
| 79 | 79 | 0.684 |
| 8 | 8 | 0.105 |
| 80 | 80 | 0.815 |
| 81 | 81 | 0.467 |
| 82 | 82 | 0.887 |
| 83 | 83 | 0.198 |
| 84 | 84 | 0.641 |
| 85 | 85 | 0.0732 |
| 86 | 86 | 0.986 |
| 87 | 87 | 0.233 |
| 88 | 88 | 0.0888 |
| 89 | 89 | 0.0828 |
| 9 | 9 | 0.262 |
| 90 | 90 | 0.196 |
| 91 | 91 | 0.935 |
| 92 | 92 | 0.634 |
| 93 | 93 | 0.752 |
| 94 | 94 | 0.121 |
| 95 | 95 | 0.161 |
| 96 | 96 | 0.644 |
| 97 | 97 | 0.258 |
| 98 | 98 | 0.698 |
| 99 | 99 | 0.0112 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11337
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000084 human keratocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002363 (keratocyte)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0000020 (sense organ)
0003566 (head connective tissue)
0003891 (stroma)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000964 (cornea)
0001777 (substantia propria of cornea)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0010409 (eye surface)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000084 (human keratocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000221 (ectodermal cell)
CL:0000008 (migratory cranial neural crest cell)
