FF:11453-119A4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005472 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005472 | ||
|accession_numbers=CAGE;DRX008122;DRR008994;DRZ000419;DRZ001804;DRZ011769;DRZ013154 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037124;DRR041490;DRZ007132 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002048,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004802,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0009569,UBERON:0005178,UBERON:0000485,UBERON:0000072,UBERON:0005177,UBERON:0004807,UBERON:0004815,UBERON:0000117,UBERON:0000171,UBERON:0000115,UBERON:0000464,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0002031,UBERON:0002185,UBERON:0000065,UBERON:0001558,UBERON:0000170,UBERON:0001004,UBERON:0002224,UBERON:0000915 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000082,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0002328 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000015 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.59!385.24!SOX15;;chr1:6479968..6479986,-!p1@HES2!1.98!94.70!HES2;;chr15:83953397..83953425,-!p1@BNC1!1.79!69.88!BNC1;;chr1:209979467..209979494,-!p1@IRF6!1.76!63.44!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.70!49.65!IRF6;;chr11:34642612..34642646,+!p1@EHF!1.70!48.73!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.61!39.54!ZBED2;;chr5:134369905..134369972,-!p1@PITX1!1.60!57.92!PITX1;;chr6:34524093..34524135,-!p1@SPDEF!1.60!38.62!SPDEF;;chr12:54785074..54785122,-!p2@ZNF385A!1.59!57.00!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.59!43.21!ZNF385A;;chr6:34524049..34524089,-!p2@SPDEF!1.53!33.10!SPDEF;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.94!TFAP2A;;chr4:57547454..57547469,-!p1@HOPX!1.47!28.50!HOPX;;chr11:65686802..65686818,+!p6@DRAP1!1.44!45.97!DRAP1;;chr6:10412600..10412637,-!p1@TFAP2A!1.41!40.45!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!1.41!24.82!SPDEF;;chr22:19748231..19748317,+!p1@TBX1!1.40!23.90!TBX1;;chr17:7492684..7492778,-!p2@SOX15!1.39!48.73!SOX15;;chr3:189507432..189507459,+!p1@TP63!1.35!21.15!TP63;;chr11:120107344..120107351,+!p1@POU2F3!1.33!24.82!POU2F3;;chr8:10588010..10588030,-!p1@SOX7!1.33!20.23!SOX7;;chr5:134369879..134369898,-!p2@PITX1!1.20!14.71!PITX1;;chr11:129245526..129245553,+!p1@BARX2!1.20!14.71!BARX2;;chr5:2751762..2751784,-!p1@IRX2!1.14!12.87!IRX2;;chr19:45579725..45579743,-!p1@ZNF296!1.13!56.08!ZNF296;;chr14:38064429..38064486,-!p1@FOXA1!1.11!11.95!FOXA1;;chr14:90085820..90085840,-!p6@FOXN3!1.11!11.95!FOXN3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.10!102.06!PPP1R13L;;chr2:46524897..46524911,+!p2@EPAS1!1.08!31.26!EPAS1;;chr6:10415484..10415508,-!p3@TFAP2A!1.08!11.03!TFAP2A;;chr12:27485762..27485776,+!p3@ARNTL2!1.05!27.58!ARNTL2;;chr11:34645791..34645836,+!p3@EHF!1.05!10.11!EHF;;chr14:37131058..37131139,+!p1@PAX9!1.05!10.11!PAX9;;chr1:2461692..2461710,-!p1@HES5!1.05!10.11!HES5;;chr15:101069113..101069169,-!p1@CERS3!1.05!10.11!CERS3;;chr13:73633131..73633149,+!p1@KLF5!1.02!102.06!KLF5;;chr11:65686732..65686756,+!p2@DRAP1!1.02!40.45!DRAP1;;chr17:45928443..45928473,-!p2@SP6!1.01!9.19!SP6;;chr17:8027418..8027432,-!p1@HES7!1.01!9.19!HES7;;chr2:122042770..122042785,-!p1@TFCP2L1!1.01!9.19!TFCP2L1;;chr8:128748308..128748324,+!p2@MYC!0.99!250.08!MYC;;chr1:37940170..37940190,+!p1@ZC3H12A!0.99!111.25!ZC3H12A;;chr8:128747661..128747703,+!p6@MYC!0.99!11.95!MYC;;chr8:49833948..49833973,-!p2@SNAI2!0.98!55.17!SNAI2;;chr1:24645832..24645853,+!p1@GRHL3!0.97!8.27!GRHL3;;chr17:7492979..7492991,-!p5@SOX15!0.97!8.27!SOX15;;chr1:8934931..8934947,-!p4@ENO1!0.93!25.74!ENO1;;chr17:80797886..80797906,-!p1@ZNF750!0.92!7.36!ZNF750;;chr11:34642656..34642667,+!p2@EHF!0.92!7.36!EHF;;chr2:113994526..113994556,-!p3@PAX8!0.92!7.36!PAX8;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.36!KDM5D;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.02!HMGA2;;chr14:21566731..21566836,-!p1@ZNF219!0.90!78.15!ZNF219;;chr12:66218255..66218304,+!p3@HMGA2!0.90!19.31!HMGA2;;chr22:21355865..21355886,-!p5@THAP7!0.87!7.36!THAP7;;chr2:45236540..45236577,-!p1@SIX2!0.87!6.44!SIX2;;chr3:111314230..111314241,-!p2@ZBED2!0.87!6.44!ZBED2;;chr17:45928521..45928539,-!p1@SP6!0.87!6.44!SP6;;chr1:201979703..201979721,+!p2@ELF3!0.87!6.44!ELF3;;chr6:10412576..10412599,-!p5@TFAP2A!0.87!6.44!TFAP2A;;chr6:10415263..10415274,-!p8@TFAP2A!0.87!6.44!TFAP2A;;chr20:42295745..42295765,+!p1@MYBL2!0.86!108.49!MYBL2;;chr16:54964740..54964789,+!p1@IRX5!0.86!9.19!IRX5;;chr12:7079780..7079791,-!p2@PHB2!0.85!34.02!PHB2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.84!453.27!TAX1BP3;;chr1:8926369..8926385,-!p12@ENO1!0.84!8.27!ENO1;;chr2:169312600..169312606,+!p2@CERS6!0.82!9.19!CERS6;;chr11:65667846..65667868,-!p1@FOSL1!0.81!157.22!FOSL1;;chr12:27485785..27485816,+!p1@ARNTL2!0.81!41.37!ARNTL2;;chr2:70314240..70314256,+!p4@PCBP1!0.81!11.95!PCBP1;;chr4:121843402..121843416,+!p4@PRDM5!0.81!5.52!PRDM5;;chr1:209979449..209979460,-!p3@IRF6!0.81!5.52!IRF6;;chr1:24645921..24645973,+!p2@GRHL3!0.81!5.52!GRHL3;;chr20:18038521..18038571,-!p1@OVOL2!0.81!5.52!OVOL2;;chr17:7492504..7492520,-!p3@SOX15!0.81!5.52!SOX15;;chr11:65554528..65554546,+!p1@OVOL1!0.81!5.52!OVOL1;;chr11:65554563..65554576,+!p2@OVOL1!0.81!5.52!OVOL1;;chr9:22447422..22447483,+!p1@DMRTA1!0.81!5.52!DMRTA1;;chr2:239756739..239756755,+!p2@TWIST2!0.79!9.19!TWIST2;;chr17:41623692..41623715,-!p1@ETV4!0.78!22.99!ETV4;;chr11:47236584..47236679,+!p1@DDB2!0.76!57.00!DDB2;;chr3:141121847..141121868,+!p5@ZBTB38!0.75!7.36!ZBTB38;;chr2:63277948..63277974,+!p1@OTX1!0.75!4.60!OTX1;;chr3:189507460..189507471,+!p3@TP63!0.75!4.60!TP63;;chr4:299227..299272,-!p1@ZNF732!0.75!4.60!ZNF732;;chr19:45579699..45579704,-!p3@ZNF296!0.75!4.60!ZNF296;;chr8:102504690..102504704,+!p3@GRHL2!0.75!4.60!GRHL2;;chr14:37051798..37051831,-!p1@NKX2-8!0.75!4.60!NKX2-8;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.06!SNAI2;;chr12:53625966..53626012,-!p2@RARG!0.74!12.87!RARG;;chr20:50721803..50721857,-!p2@ZFP64!0.74!7.36!ZFP64;;chr1:8938709..8938720,-!p3@ENO1!0.72!233.53!ENO1;;chr16:29818160..29818188,+!p6@MAZ!0.72!22.07!MAZ;;chr16:29818199..29818216,+!p11@MAZ!0.72!7.36!MAZ;;chr11:64073022..64073056,+!p1@ESRRA!0.71!55.17!ESRRA;;chr2:239756671..239756732,+!p1@TWIST2!0.71!14.71!TWIST2;;chr12:48298765..48298783,-!p2@VDR!0.71!9.19!VDR;;chr11:62369806..62369837,-!p8@MTA2!0.71!5.52!MTA2;;chr5:138609782..138609826,+!p5@MATR3!0.70!29.42!MATR3;;chr8:128747757..128747800,+!p7@MYC!0.69!5.52!MYC;;chr6:10412392..10412409,-!p4@TFAP2A!0.69!4.60!TFAP2A;;chr6:41040923..41040952,+!p2@NFYA!0.68!11.03!NFYA;;chr17:41623075..41623101,-!p9@ETV4!0.68!4.60!ETV4;;chr11:65686776..65686787,+!p9@DRAP1!0.68!4.60!DRAP1;;chr14:61116183..61116208,-!p1@SIX1!0.67!15.63!SIX1;;chr18:3448455..3448480,+!p5@TGIF1!0.67!7.36!TGIF1;;chr3:32023232..32023273,+!p1@ZNF860!0.67!5.52!ZNF860;;chr2:45236579..45236596,-!p2@SIX2!0.67!3.68!SIX2;;chr15:83953373..83953386,-!p2@BNC1!0.67!3.68!BNC1;;chr17:26833339..26833378,+!p1@FOXN1!0.67!3.68!FOXN1;;chr6:10413188..10413249,-!p7@TFAP2A!0.67!3.68!TFAP2A;;chr1:24646263..24646277,+!p4@GRHL3!0.67!3.68!GRHL3;;chr1:50889103..50889145,-!p1@DMRTA2!0.67!3.68!DMRTA2;;chr6:20402102..20402152,+!p1@E2F3!0.66!16.55!E2F3;;chr19:42636586..42636607,-!p1@POU2F2!0.66!11.03!POU2F2;;chr22:42229210..42229229,+!p3@SREBF2!0.66!9.19!SREBF2;;chr14:21566882..21566898,-!p3@ZNF219!0.66!5.52!ZNF219;;chr20:42295713..42295738,+!p2@MYBL2!0.64!22.99!MYBL2;;chr12:27485823..27485868,+!p2@ARNTL2!0.64!15.63!ARNTL2;;chr15:90544532..90544563,+!p1@ZNF710!0.64!7.36!ZNF710;;chr1:8924055..8924074,-!p9@ENO1!0.64!6.44!ENO1;;chr11:65687362..65687436,+!p3@DRAP1!0.63!17.47!DRAP1;;chr1:6640110..6640130,+!p2@ZBTB48!0.63!4.60!ZBTB48;;chr16:29817841..29817865,+!p1@MAZ!0.62!80.91!MAZ;;chr1:158979792..158979814,+!p2@IFI16!0.62!35.86!IFI16;;chr1:26496382..26496457,+!p1@ZNF593!0.61!224.34!ZNF593;;chr14:69262789..69262822,-!p2@ZFP36L1!0.61!9.19!ZFP36L1;;chr1:26496459..26496470,+!p2@ZNF593!0.61!6.44!ZNF593;;chr6:1312325..1312340,+!p1@FOXQ1!0.61!5.52!FOXQ1;;chr11:65687882..65687902,+!p10@DRAP1!0.61!4.60!DRAP1;;chr20:50808667..50808729,-!p3@ZFP64!0.60!6.44!ZFP64;;chr12:66218836..66218888,+!p1@HMGA2!0.59!33.10!HMGA2;;chr12:48298785..48298828,-!p1@VDR!0.59!18.39!VDR;;chr12:66218212..66218244,+!p5@HMGA2!0.59!4.60!HMGA2;;chr12:27485889..27485900,+!p4@ARNTL2!0.59!3.68!ARNTL2;;chr1:8938736..8938756,-!p1@ENO1!0.58!3848.70!ENO1;;chr1:8938766..8938774,-!p2@ENO1!0.58!237.21!ENO1;;chr19:19303731..19303783,+!p1@RFXANK!0.58!80.91!RFXANK;;chr11:46722560..46722595,+!p1@ZNF408!0.57!17.47!ZNF408;;chr11:47270436..47270464,+!p2@NR1H3!0.57!6.44!NR1H3;;chr12:66218378..66218401,+!p6@HMGA2!0.57!4.60!HMGA2;;chr11:65687222..65687240,+!p7@DRAP1!0.57!3.68!DRAP1;;chr20:55204351..55204377,+!p1@TFAP2C!0.57!3.68!TFAP2C;;chr1:209979375..209979386,-!p4@IRF6!0.57!2.76!IRF6;;chr20:18038486..18038520,-!p2@OVOL2!0.57!2.76!OVOL2;;chr20:22565185..22565223,-!p3@FOXA2!0.57!2.76!FOXA2;;chr20:22565370..22565388,-!p2@FOXA2!0.57!2.76!FOXA2;;chr20:55205825..55205847,+!p2@TFAP2C!0.57!2.76!TFAP2C;;chr11:128563652..128563689,+!p3@FLI1!0.57!2.76!FLI1;;chr11:129245736..129245758,+!p2@BARX2!0.57!2.76!BARX2;;chr14:38064307..38064323,-!p3@FOXA1!0.57!2.76!FOXA1;;chrY:2803415..2803468,+!p1@ZFY!0.57!2.76!ZFY;;chr5:2751785..2751808,-!p2@IRX2!0.57!2.76!IRX2;;chr5:3595934..3595957,+!p2@IRX1!0.57!2.76!IRX1;;chr5:50679228..50679288,+!p1@ISL1!0.57!2.76!ISL1;;chr6:10419768..10419819,-!p6@TFAP2A!0.57!2.76!TFAP2A;;chr6:10419824..10419840,-!p9@TFAP2A!0.57!2.76!TFAP2A;;chr8:123875175..123875188,+!p22@ZHX2!0.57!2.76!ZHX2;;chr8:128747729..128747748,+!p14@MYC!0.57!2.76!MYC;;chr9:100615499..100615519,+!p1@FOXE1!0.57!2.76!FOXE1;;chr15:83953474..83953483,-!p3@BNC1!0.57!2.76!BNC1;;chr2:113994491..113994515,-!p7@PAX8!0.57!2.76!PAX8;;chr3:181429704..181429722,+!p1@SOX2!0.57!2.76!SOX2;;chr6:34204642..34204664,+!p2@HMGA1!0.55!432.13!HMGA1;;chr11:64072981..64073005,+!p2@ESRRA!0.55!21.15!ESRRA;;chr17:41623667..41623682,-!p8@ETV4!0.55!2.76!ETV4;;chr19:56154958..56155027,+!p1@ZNF581!0.54!103.89!ZNF581;;chr6:34204973..34204990,+!p4@HMGA1!0.54!41.37!HMGA1;;chr12:53614115..53614154,-!p1@RARG!0.54!16.55!RARG;;chr12:10875351..10875422,-!p4@CSDA!0.54!5.52!CSDA;;chr17:61920116..61920131,-!p5@SMARCD2!0.54!5.52!SMARCD2;;chr16:67881588..67881612,-!p2@CENPT!0.54!3.68!CENPT;;chr1:149858461..149858479,+!p1@BOLA1!0.53!1206.28!BOLA1;;chr6:34204672..34204692,+!p1@HMGA1!0.53!349.38!HMGA1;;chr19:1863568..1863586,-!p1@KLF16!0.53!102.06!KLF16;;chr11:47235980..47236028,+!p3@DDB2!0.53!6.44!DDB2;;chr19:15543565..15543579,-!p2@WIZ!0.52!12.87!WIZ;;chr19:56135928..56135936,-!p1@ZNF784!0.52!11.03!ZNF784;;chr4:95128841..95128865,+!p4@SMARCAD1!0.52!5.52!SMARCAD1;;chr8:145159324..145159333,+!p5@MAF1!0.52!5.52!MAF1;;chr16:30407021..30407061,+!p3@ZNF48!0.52!2.76!ZNF48;;chr4:57522166..57522260,-!p2@HOPX!0.52!2.76!HOPX;;chr22:41864662..41864708,-!p1@PHF5A!0.51!125.96!PHF5A;;chr16:3162557..3162600,+!p1@ZNF205!0.51!24.82!ZNF205;;chr11:128392273..128392308,-!p2@ETS1!0.51!11.95!ETS1;;chr1:45805872..45805900,+!p2@TOE1!0.51!6.44!TOE1;;chr1:154975110..154975149,+!p2@ZBTB7B!0.51!5.52!ZBTB7B;;chr1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| |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.59!385.24!SOX15;;chr1:6479968..6479986,-!p1@HES2!1.98!94.70!HES2;;chr15:83953397..83953425,-!p1@BNC1!1.79!69.88!BNC1;;chr1:209979467..209979494,-!p1@IRF6!1.76!63.44!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.70!49.65!IRF6;;chr11:34642612..34642646,+!p1@EHF!1.70!48.73!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.61!39.54!ZBED2;;chr5:134369905..134369972,-!p1@PITX1!1.60!57.92!PITX1;;chr6:34524093..34524135,-!p1@SPDEF!1.60!38.62!SPDEF;;chr12:54785074..54785122,-!p2@ZNF385A!1.59!57.00!ZNF385A;;chr12:54785054..54785072,-!p4@ZNF385A!1.59!43.21!ZNF385A;;chr6:34524049..34524089,-!p2@SPDEF!1.53!33.10!SPDEF;;chr6:10415276..10415341,-!p2@TFAP2A!1.47!34.94!TFAP2A;;chr4:57547454..57547469,-!p1@HOPX!1.47!28.50!HOPX;;chr11:65686802..65686818,+!p6@DRAP1!1.44!45.97!DRAP1;;chr6:10412600..10412637,-!p1@TFAP2A!1.41!40.45!TFAP2A;;chr6:34524025..34524045,-!p3@SPDEF!1.41!24.82!SPDEF;;chr22:19748231..19748317,+!p1@TBX1!1.40!23.90!TBX1;;chr17:7492684..7492778,-!p2@SOX15!1.39!48.73!SOX15;;chr3:189507432..189507459,+!p1@TP63!1.35!21.15!TP63;;chr11:120107344..120107351,+!p1@POU2F3!1.33!24.82!POU2F3;;chr8:10588010..10588030,-!p1@SOX7!1.33!20.23!SOX7;;chr5:134369879..134369898,-!p2@PITX1!1.20!14.71!PITX1;;chr11:129245526..129245553,+!p1@BARX2!1.20!14.71!BARX2;;chr5:2751762..2751784,-!p1@IRX2!1.14!12.87!IRX2;;chr19:45579725..45579743,-!p1@ZNF296!1.13!56.08!ZNF296;;chr14:38064429..38064486,-!p1@FOXA1!1.11!11.95!FOXA1;;chr14:90085820..90085840,-!p6@FOXN3!1.11!11.95!FOXN3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.10!102.06!PPP1R13L;;chr2:46524897..46524911,+!p2@EPAS1!1.08!31.26!EPAS1;;chr6:10415484..10415508,-!p3@TFAP2A!1.08!11.03!TFAP2A;;chr12:27485762..27485776,+!p3@ARNTL2!1.05!27.58!ARNTL2;;chr11:34645791..34645836,+!p3@EHF!1.05!10.11!EHF;;chr14:37131058..37131139,+!p1@PAX9!1.05!10.11!PAX9;;chr1:2461692..2461710,-!p1@HES5!1.05!10.11!HES5;;chr15:101069113..101069169,-!p1@CERS3!1.05!10.11!CERS3;;chr13:73633131..73633149,+!p1@KLF5!1.02!102.06!KLF5;;chr11:65686732..65686756,+!p2@DRAP1!1.02!40.45!DRAP1;;chr17:45928443..45928473,-!p2@SP6!1.01!9.19!SP6;;chr17:8027418..8027432,-!p1@HES7!1.01!9.19!HES7;;chr2:122042770..122042785,-!p1@TFCP2L1!1.01!9.19!TFCP2L1;;chr8:128748308..128748324,+!p2@MYC!0.99!250.08!MYC;;chr1:37940170..37940190,+!p1@ZC3H12A!0.99!111.25!ZC3H12A;;chr8:128747661..128747703,+!p6@MYC!0.99!11.95!MYC;;chr8:49833948..49833973,-!p2@SNAI2!0.98!55.17!SNAI2;;chr1:24645832..24645853,+!p1@GRHL3!0.97!8.27!GRHL3;;chr17:7492979..7492991,-!p5@SOX15!0.97!8.27!SOX15;;chr1:8934931..8934947,-!p4@ENO1!0.93!25.74!ENO1;;chr17:80797886..80797906,-!p1@ZNF750!0.92!7.36!ZNF750;;chr11:34642656..34642667,+!p2@EHF!0.92!7.36!EHF;;chr2:113994526..113994556,-!p3@PAX8!0.92!7.36!PAX8;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.36!KDM5D;;chr12:66218598..66218645,+!p2@HMGA2!0.91!34.02!HMGA2;;chr14:21566731..21566836,-!p1@ZNF219!0.90!78.15!ZNF219;;chr12:66218255..66218304,+!p3@HMGA2!0.90!19.31!HMGA2;;chr22:21355865..21355886,-!p5@THAP7!0.87!7.36!THAP7;;chr2:45236540..45236577,-!p1@SIX2!0.87!6.44!SIX2;;chr3:111314230..111314241,-!p2@ZBED2!0.87!6.44!ZBED2;;chr17:45928521..45928539,-!p1@SP6!0.87!6.44!SP6;;chr1:201979703..201979721,+!p2@ELF3!0.87!6.44!ELF3;;chr6:10412576..10412599,-!p5@TFAP2A!0.87!6.44!TFAP2A;;chr6:10415263..10415274,-!p8@TFAP2A!0.87!6.44!TFAP2A;;chr20:42295745..42295765,+!p1@MYBL2!0.86!108.49!MYBL2;;chr16:54964740..54964789,+!p1@IRX5!0.86!9.19!IRX5;;chr12:7079780..7079791,-!p2@PHB2!0.85!34.02!PHB2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.84!453.27!TAX1BP3;;chr1:8926369..8926385,-!p12@ENO1!0.84!8.27!ENO1;;chr2:169312600..169312606,+!p2@CERS6!0.82!9.19!CERS6;;chr11:65667846..65667868,-!p1@FOSL1!0.81!157.22!FOSL1;;chr12:27485785..27485816,+!p1@ARNTL2!0.81!41.37!ARNTL2;;chr2:70314240..70314256,+!p4@PCBP1!0.81!11.95!PCBP1;;chr4:121843402..121843416,+!p4@PRDM5!0.81!5.52!PRDM5;;chr1:209979449..209979460,-!p3@IRF6!0.81!5.52!IRF6;;chr1:24645921..24645973,+!p2@GRHL3!0.81!5.52!GRHL3;;chr20:18038521..18038571,-!p1@OVOL2!0.81!5.52!OVOL2;;chr17:7492504..7492520,-!p3@SOX15!0.81!5.52!SOX15;;chr11:65554528..65554546,+!p1@OVOL1!0.81!5.52!OVOL1;;chr11:65554563..65554576,+!p2@OVOL1!0.81!5.52!OVOL1;;chr9:22447422..22447483,+!p1@DMRTA1!0.81!5.52!DMRTA1;;chr2:239756739..239756755,+!p2@TWIST2!0.79!9.19!TWIST2;;chr17:41623692..41623715,-!p1@ETV4!0.78!22.99!ETV4;;chr11:47236584..47236679,+!p1@DDB2!0.76!57.00!DDB2;;chr3:141121847..141121868,+!p5@ZBTB38!0.75!7.36!ZBTB38;;chr2:63277948..63277974,+!p1@OTX1!0.75!4.60!OTX1;;chr3:189507460..189507471,+!p3@TP63!0.75!4.60!TP63;;chr4:299227..299272,-!p1@ZNF732!0.75!4.60!ZNF732;;chr19:45579699..45579704,-!p3@ZNF296!0.75!4.60!ZNF296;;chr8:102504690..102504704,+!p3@GRHL2!0.75!4.60!GRHL2;;chr14:37051798..37051831,-!p1@NKX2-8!0.75!4.60!NKX2-8;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.06!SNAI2;;chr12:53625966..53626012,-!p2@RARG!0.74!12.87!RARG;;chr20:50721803..50721857,-!p2@ZFP64!0.74!7.36!ZFP64;;chr1:8938709..8938720,-!p3@ENO1!0.72!233.53!ENO1;;chr16:29818160..29818188,+!p6@MAZ!0.72!22.07!MAZ;;chr16:29818199..29818216,+!p11@MAZ!0.72!7.36!MAZ;;chr11:64073022..64073056,+!p1@ESRRA!0.71!55.17!ESRRA;;chr2:239756671..239756732,+!p1@TWIST2!0.71!14.71!TWIST2;;chr12:48298765..48298783,-!p2@VDR!0.71!9.19!VDR;;chr11:62369806..62369837,-!p8@MTA2!0.71!5.52!MTA2;;chr5:138609782..138609826,+!p5@MATR3!0.70!29.42!MATR3;;chr8:128747757..128747800,+!p7@MYC!0.69!5.52!MYC;;chr6:10412392..10412409,-!p4@TFAP2A!0.69!4.60!TFAP2A;;chr6:41040923..41040952,+!p2@NFYA!0.68!11.03!NFYA;;chr17:41623075..41623101,-!p9@ETV4!0.68!4.60!ETV4;;chr11:65686776..65686787,+!p9@DRAP1!0.68!4.60!DRAP1;;chr14:61116183..61116208,-!p1@SIX1!0.67!15.63!SIX1;;chr18:3448455..3448480,+!p5@TGIF1!0.67!7.36!TGIF1;;chr3:32023232..32023273,+!p1@ZNF860!0.67!5.52!ZNF860;;chr2:45236579..45236596,-!p2@SIX2!0.67!3.68!SIX2;;chr15:83953373..83953386,-!p2@BNC1!0.67!3.68!BNC1;;chr17:26833339..26833378,+!p1@FOXN1!0.67!3.68!FOXN1;;chr6:10413188..10413249,-!p7@TFAP2A!0.67!3.68!TFAP2A;;chr1:24646263..24646277,+!p4@GRHL3!0.67!3.68!GRHL3;;chr1:50889103..50889145,-!p1@DMRTA2!0.67!3.68!DMRTA2;;chr6:20402102..20402152,+!p1@E2F3!0.66!16.55!E2F3;;chr19:42636586..42636607,-!p1@POU2F2!0.66!11.03!POU2F2;;chr22:42229210..42229229,+!p3@SREBF2!0.66!9.19!SREBF2;;chr14:21566882..21566898,-!p3@ZNF219!0.66!5.52!ZNF219;;chr20:42295713..42295738,+!p2@MYBL2!0.64!22.99!MYBL2;;chr12:27485823..27485868,+!p2@ARNTL2!0.64!15.63!ARNTL2;;chr15:90544532..90544563,+!p1@ZNF710!0.64!7.36!ZNF710;;chr1:8924055..8924074,-!p9@ENO1!0.64!6.44!ENO1;;chr11:65687362..65687436,+!p3@DRAP1!0.63!17.47!DRAP1;;chr1:6640110..6640130,+!p2@ZBTB48!0.63!4.60!ZBTB48;;chr16:29817841..29817865,+!p1@MAZ!0.62!80.91!MAZ;;chr1:158979792..158979814,+!p2@IFI16!0.62!35.86!IFI16;;chr1:26496382..26496457,+!p1@ZNF593!0.61!224.34!ZNF593;;chr14:69262789..69262822,-!p2@ZFP36L1!0.61!9.19!ZFP36L1;;chr1:26496459..26496470,+!p2@ZNF593!0.61!6.44!ZNF593;;chr6:1312325..1312340,+!p1@FOXQ1!0.61!5.52!FOXQ1;;chr11:65687882..65687902,+!p10@DRAP1!0.61!4.60!DRAP1;;chr20:50808667..50808729,-!p3@ZFP64!0.60!6.44!ZFP64;;chr12:66218836..66218888,+!p1@HMGA2!0.59!33.10!HMGA2;;chr12:48298785..48298828,-!p1@VDR!0.59!18.39!VDR;;chr12:66218212..66218244,+!p5@HMGA2!0.59!4.60!HMGA2;;chr12:27485889..27485900,+!p4@ARNTL2!0.59!3.68!ARNTL2;;chr1:8938736..8938756,-!p1@ENO1!0.58!3848.70!ENO1;;chr1:8938766..8938774,-!p2@ENO1!0.58!237.21!ENO1;;chr19:19303731..19303783,+!p1@RFXANK!0.58!80.91!RFXANK;;chr11:46722560..46722595,+!p1@ZNF408!0.57!17.47!ZNF408;;chr11:47270436..47270464,+!p2@NR1H3!0.57!6.44!NR1H3;;chr12:66218378..66218401,+!p6@HMGA2!0.57!4.60!HMGA2;;chr11:65687222..65687240,+!p7@DRAP1!0.57!3.68!DRAP1;;chr20:55204351..55204377,+!p1@TFAP2C!0.57!3.68!TFAP2C;;chr1:209979375..209979386,-!p4@IRF6!0.57!2.76!IRF6;;chr20:18038486..18038520,-!p2@OVOL2!0.57!2.76!OVOL2;;chr20:22565185..22565223,-!p3@FOXA2!0.57!2.76!FOXA2;;chr20:22565370..22565388,-!p2@FOXA2!0.57!2.76!FOXA2;;chr20:55205825..55205847,+!p2@TFAP2C!0.57!2.76!TFAP2C;;chr11:128563652..128563689,+!p3@FLI1!0.57!2.76!FLI1;;chr11:129245736..129245758,+!p2@BARX2!0.57!2.76!BARX2;;chr14:38064307..38064323,-!p3@FOXA1!0.57!2.76!FOXA1;;chrY:2803415..2803468,+!p1@ZFY!0.57!2.76!ZFY;;chr5:2751785..2751808,-!p2@IRX2!0.57!2.76!IRX2;;chr5:3595934..3595957,+!p2@IRX1!0.57!2.76!IRX1;;chr5:50679228..50679288,+!p1@ISL1!0.57!2.76!ISL1;;chr6:10419768..10419819,-!p6@TFAP2A!0.57!2.76!TFAP2A;;chr6:10419824..10419840,-!p9@TFAP2A!0.57!2.76!TFAP2A;;chr8:123875175..123875188,+!p22@ZHX2!0.57!2.76!ZHX2;;chr8:128747729..128747748,+!p14@MYC!0.57!2.76!MYC;;chr9:100615499..100615519,+!p1@FOXE1!0.57!2.76!FOXE1;;chr15:83953474..83953483,-!p3@BNC1!0.57!2.76!BNC1;;chr2:113994491..113994515,-!p7@PAX8!0.57!2.76!PAX8;;chr3:181429704..181429722,+!p1@SOX2!0.57!2.76!SOX2;;chr6:34204642..34204664,+!p2@HMGA1!0.55!432.13!HMGA1;;chr11:64072981..64073005,+!p2@ESRRA!0.55!21.15!ESRRA;;chr17:41623667..41623682,-!p8@ETV4!0.55!2.76!ETV4;;chr19:56154958..56155027,+!p1@ZNF581!0.54!103.89!ZNF581;;chr6:34204973..34204990,+!p4@HMGA1!0.54!41.37!HMGA1;;chr12:53614115..53614154,-!p1@RARG!0.54!16.55!RARG;;chr12:10875351..10875422,-!p4@CSDA!0.54!5.52!CSDA;;chr17:61920116..61920131,-!p5@SMARCD2!0.54!5.52!SMARCD2;;chr16:67881588..67881612,-!p2@CENPT!0.54!3.68!CENPT;;chr1:149858461..149858479,+!p1@BOLA1!0.53!1206.28!BOLA1;;chr6:34204672..34204692,+!p1@HMGA1!0.53!349.38!HMGA1;;chr19:1863568..1863586,-!p1@KLF16!0.53!102.06!KLF16;;chr11:47235980..47236028,+!p3@DDB2!0.53!6.44!DDB2;;chr19:15543565..15543579,-!p2@WIZ!0.52!12.87!WIZ;;chr19:56135928..56135936,-!p1@ZNF784!0.52!11.03!ZNF784;;chr4:95128841..95128865,+!p4@SMARCAD1!0.52!5.52!SMARCAD1;;chr8:145159324..145159333,+!p5@MAF1!0.52!5.52!MAF1;;chr16:30407021..30407061,+!p3@ZNF48!0.52!2.76!ZNF48;;chr4:57522166..57522260,-!p2@HOPX!0.52!2.76!HOPX;;chr22:41864662..41864708,-!p1@PHF5A!0.51!125.96!PHF5A;;chr16:3162557..3162600,+!p1@ZNF205!0.51!24.82!ZNF205;;chr11:128392273..128392308,-!p2@ETS1!0.51!11.95!ETS1;;chr1:45805872..45805900,+!p2@TOE1!0.51!6.44!TOE1;;chr1:154975110..154975149,+!p2@ZBTB7B!0.51!5.52!ZBTB7B;;chr1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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000082;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002328;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002632;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000065;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000485;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001558;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002048;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002185;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005181;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008947 | |||
|ffid_belonging_in_development=CL:0000223 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Bronchial%2520Epithelial%2520Cell%252c%2520donor4.CNhs12054.11453-119A4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11453-119A4 | |id=FF:11453-119A4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000015 | ||
|is_obsolete= | |||
|library_id=CNhs12054 | |||
|library_id_phase_based=2:CNhs12054 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11453 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.GTGAAA.11453 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11453 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.GTGAAA.11453 | |||
|name=Bronchial Epithelial Cell, donor4 | |name=Bronchial Epithelial Cell, donor4 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12054,LSID838,release011,COMPLETED | |profile_hcage=CNhs12054,LSID838,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10008,,, | |profile_srnaseq=SRhi10008,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.122852262727471,0,0.17830799236595,0.710538951047645,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129847282465429,0,0,0,0.226570645286021,0,0.355183394303983,0,0,0.537074373375002,0,0,0,0,0,0,0,0,0,0,0,0,0.15608284205575,0.320832334918863,0,0,0.453141290572041,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.00587703905386108,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.283170292813857,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0620560133640373,0,0,0,0.075154617903222,-0.211197402695869,0,0,0,0,-0.0980353512377064,0.666554986261324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.283170292813857,0,0,0.227364932125649,0.372932761287145,0,0,0.10515063012018,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=CA502-R10a | |rna_catalog_number=CA502-R10a | ||
| Line 56: | Line 82: | ||
|rna_tube_id=119A4 | |rna_tube_id=119A4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10008.GTGAAA | |||
|sample_age=20 | |sample_age=20 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 77: | Line 105: | ||
|sample_tissue=lung | |sample_tissue=lung | ||
|top_motifs=PPARG:2.51016496887;NR5A1,2:2.47466840946;TP53:2.38509655325;POU2F1..3:2.14712405396;VSX1,2:1.8612811267;TBX4,5:1.68703432619;ZEB1:1.68108265608;SNAI1..3:1.58990274903;NKX2-3_NKX2-5:1.39059873034;ZNF148:1.38111726694;MYOD1:1.19106403608;TBP:1.1775867697;HAND1,2:1.00462749178;IKZF1:0.993720045574;ZNF423:0.975010630055;PAX1,9:0.927019630365;HMX1:0.914078385619;ADNP_IRX_SIX_ZHX:0.900967425156;TFCP2:0.893037459499;XCPE1{core}:0.872466695288;TEAD1:0.785403303583;FOXQ1:0.746927068806;RBPJ:0.693877903939;NANOG:0.683201537444;ARID5B:0.677016004501;STAT5{A,B}:0.675606341898;LEF1_TCF7_TCF7L1,2:0.6592579442;ONECUT1,2:0.635637544563;FOS_FOS{B,L1}_JUN{B,D}:0.631662179641;GLI1..3:0.621382197122;TFAP2{A,C}:0.614757692348;NFIL3:0.613932660619;SP1:0.572612236277;POU3F1..4:0.562020334163;AR:0.559232865313;bHLH_family:0.543106132702;HIF1A:0.534965792076;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.528647494219;ELK1,4_GABP{A,B1}:0.512421752273;BACH2:0.498149792711;REST:0.491729555593;ESR1:0.47213941488;FOXL1:0.457433869968;SOX{8,9,10}:0.451043618235;GFI1:0.430380822944;GTF2A1,2:0.429402963252;EP300:0.422648107757;FOXM1:0.361044356922;TLX1..3_NFIC{dimer}:0.332545337637;LHX3,4:0.318872098934;ZNF143:0.315705946986;FOSL2:0.314080331261;PBX1:0.31085932552;TFAP4:0.29424627313;YY1:0.267812312113;ELF1,2,4:0.244378372586;NKX2-2,8:0.235233295017;E2F1..5:0.233647913985;ZBTB6:0.233594030336;HLF:0.226814168657;MTF1:0.224191632189;ZIC1..3:0.220955577968;EBF1:0.218390773528;GFI1B:0.201249749547;ZNF238:0.197242738401;PAX2:0.178723057953;RXR{A,B,G}:0.170318786875;OCT4_SOX2{dimer}:0.168921803864;SOX17:0.145777700439;NFE2:0.134474878863;NFY{A,B,C}:0.131742729269;LMO2:0.12591668868;HNF4A_NR2F1,2:0.102420843008;TLX2:0.0970228322883;HOX{A5,B5}:0.0951002586735;RXRA_VDR{dimer}:0.0839140556127;GCM1,2:0.0799251775054;GATA6:0.0459128565717;CEBPA,B_DDIT3:0.0440336743595;ESRRA:0.0409552585798;POU1F1:0.0282506404632;GZF1:0.00222988212501;POU6F1:-0.0188424265183;PAX8:-0.0469297401059;NKX3-2:-0.049177206616;FOX{F1,F2,J1}:-0.0540823741088;CRX:-0.0591766730292;NANOG{mouse}:-0.064545267152;NRF1:-0.0683891989532;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0689298612245;CDC5L:-0.0733284066209;POU5F1:-0.0772807401568;NFKB1_REL_RELA:-0.084099557285;HES1:-0.10790652777;MYB:-0.137645395837;HSF1,2:-0.177272967895;ETS1,2:-0.195252377689;TFDP1:-0.201790874687;SPZ1:-0.205151551377;HOXA9_MEIS1:-0.20570490752;T:-0.223042982925;JUN:-0.272292425475;FOX{I1,J2}:-0.275229258338;STAT2,4,6:-0.2837913822;PAX5:-0.295544247744;MAZ:-0.314912866688;HNF1A:-0.352104800195;SOX2:-0.382305863136;UFEwm:-0.386685553933;NR1H4:-0.406142484239;NR6A1:-0.428863387011;KLF4:-0.429061618767;CREB1:-0.437750879902;SPI1:-0.450200973408;TFAP2B:-0.451859658197;SPIB:-0.458968500365;HOX{A4,D4}:-0.475566559241;RFX1:-0.486706388303;SMAD1..7,9:-0.488336803149;RREB1:-0.50306517287;EN1,2:-0.510147739956;ATF5_CREB3:-0.549780232658;ZBTB16:-0.568451579998;NHLH1,2:-0.575551443509;AIRE:-0.576375538875;HIC1:-0.601373116362;HOX{A6,A7,B6,B7}:-0.612184671716;ATF4:-0.614126864757;NFE2L2:-0.62641585045;GTF2I:-0.63545220014;RUNX1..3:-0.642527418458;IRF7:-0.656855050163;PAX3,7:-0.661347626946;PDX1:-0.664038274295;MEF2{A,B,C,D}:-0.67099215698;MYBL2:-0.685022659275;NFE2L1:-0.698834871691;PAX6:-0.719345901066;FOXN1:-0.744296010175;PITX1..3:-0.754934256709;TEF:-0.76510416364;AHR_ARNT_ARNT2:-0.766532024606;FOXO1,3,4:-0.771977383076;RFX2..5_RFXANK_RFXAP:-0.776262734304;NR3C1:-0.779563897049;PRRX1,2:-0.782827858004;RORA:-0.794460263499;NFIX:-0.802554808129;ATF2:-0.813895640041;CUX2:-0.819167090548;ZFP161:-0.83549534737;SRF:-0.838257512255;MED-1{core}:-0.88416616126;MAFB:-0.886234685877;TGIF1:-0.936464227235;MYFfamily:-0.991004582093;ALX1:-1.03082119485;CDX1,2,4:-1.0319028677;FOXA2:-1.0377606119;TOPORS:-1.15845913641;BREu{core}:-1.16865021423;NFATC1..3:-1.16977727615;FOXP1:-1.17754061503;STAT1,3:-1.18387028385;DMAP1_NCOR{1,2}_SMARC:-1.20823548582;SOX5:-1.21420509183;ZNF384:-1.21838292342;TAL1_TCF{3,4,12}:-1.21986003243;ALX4:-1.22985502897;PATZ1:-1.26536824786;EVI1:-1.26858537575;IRF1,2:-1.28107376309;HMGA1,2:-1.28843058813;EGR1..3:-1.37176199256;PAX4:-1.41627897054;NKX3-1:-1.43880637504;GATA4:-1.44163583658;PRDM1:-1.45332593106;XBP1:-1.45860567874;NKX2-1,4:-1.46727105348;MZF1:-1.47194119149;SREBF1,2:-1.49241311685;MTE{core}:-1.51407934818;IKZF2:-1.51418060629;FOXP3:-1.52522123221;ATF6:-1.54311771788;FOX{D1,D2}:-1.55458003967;NKX6-1,2:-1.57021295066;DBP:-1.71033568299;HBP1_HMGB_SSRP1_UBTF:-1.74724130726;BPTF:-1.94121199602;FOXD3:-2.01668583146 | |top_motifs=PPARG:2.51016496887;NR5A1,2:2.47466840946;TP53:2.38509655325;POU2F1..3:2.14712405396;VSX1,2:1.8612811267;TBX4,5:1.68703432619;ZEB1:1.68108265608;SNAI1..3:1.58990274903;NKX2-3_NKX2-5:1.39059873034;ZNF148:1.38111726694;MYOD1:1.19106403608;TBP:1.1775867697;HAND1,2:1.00462749178;IKZF1:0.993720045574;ZNF423:0.975010630055;PAX1,9:0.927019630365;HMX1:0.914078385619;ADNP_IRX_SIX_ZHX:0.900967425156;TFCP2:0.893037459499;XCPE1{core}:0.872466695288;TEAD1:0.785403303583;FOXQ1:0.746927068806;RBPJ:0.693877903939;NANOG:0.683201537444;ARID5B:0.677016004501;STAT5{A,B}:0.675606341898;LEF1_TCF7_TCF7L1,2:0.6592579442;ONECUT1,2:0.635637544563;FOS_FOS{B,L1}_JUN{B,D}:0.631662179641;GLI1..3:0.621382197122;TFAP2{A,C}:0.614757692348;NFIL3:0.613932660619;SP1:0.572612236277;POU3F1..4:0.562020334163;AR:0.559232865313;bHLH_family:0.543106132702;HIF1A:0.534965792076;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.528647494219;ELK1,4_GABP{A,B1}:0.512421752273;BACH2:0.498149792711;REST:0.491729555593;ESR1:0.47213941488;FOXL1:0.457433869968;SOX{8,9,10}:0.451043618235;GFI1:0.430380822944;GTF2A1,2:0.429402963252;EP300:0.422648107757;FOXM1:0.361044356922;TLX1..3_NFIC{dimer}:0.332545337637;LHX3,4:0.318872098934;ZNF143:0.315705946986;FOSL2:0.314080331261;PBX1:0.31085932552;TFAP4:0.29424627313;YY1:0.267812312113;ELF1,2,4:0.244378372586;NKX2-2,8:0.235233295017;E2F1..5:0.233647913985;ZBTB6:0.233594030336;HLF:0.226814168657;MTF1:0.224191632189;ZIC1..3:0.220955577968;EBF1:0.218390773528;GFI1B:0.201249749547;ZNF238:0.197242738401;PAX2:0.178723057953;RXR{A,B,G}:0.170318786875;OCT4_SOX2{dimer}:0.168921803864;SOX17:0.145777700439;NFE2:0.134474878863;NFY{A,B,C}:0.131742729269;LMO2:0.12591668868;HNF4A_NR2F1,2:0.102420843008;TLX2:0.0970228322883;HOX{A5,B5}:0.0951002586735;RXRA_VDR{dimer}:0.0839140556127;GCM1,2:0.0799251775054;GATA6:0.0459128565717;CEBPA,B_DDIT3:0.0440336743595;ESRRA:0.0409552585798;POU1F1:0.0282506404632;GZF1:0.00222988212501;POU6F1:-0.0188424265183;PAX8:-0.0469297401059;NKX3-2:-0.049177206616;FOX{F1,F2,J1}:-0.0540823741088;CRX:-0.0591766730292;NANOG{mouse}:-0.064545267152;NRF1:-0.0683891989532;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0689298612245;CDC5L:-0.0733284066209;POU5F1:-0.0772807401568;NFKB1_REL_RELA:-0.084099557285;HES1:-0.10790652777;MYB:-0.137645395837;HSF1,2:-0.177272967895;ETS1,2:-0.195252377689;TFDP1:-0.201790874687;SPZ1:-0.205151551377;HOXA9_MEIS1:-0.20570490752;T:-0.223042982925;JUN:-0.272292425475;FOX{I1,J2}:-0.275229258338;STAT2,4,6:-0.2837913822;PAX5:-0.295544247744;MAZ:-0.314912866688;HNF1A:-0.352104800195;SOX2:-0.382305863136;UFEwm:-0.386685553933;NR1H4:-0.406142484239;NR6A1:-0.428863387011;KLF4:-0.429061618767;CREB1:-0.437750879902;SPI1:-0.450200973408;TFAP2B:-0.451859658197;SPIB:-0.458968500365;HOX{A4,D4}:-0.475566559241;RFX1:-0.486706388303;SMAD1..7,9:-0.488336803149;RREB1:-0.50306517287;EN1,2:-0.510147739956;ATF5_CREB3:-0.549780232658;ZBTB16:-0.568451579998;NHLH1,2:-0.575551443509;AIRE:-0.576375538875;HIC1:-0.601373116362;HOX{A6,A7,B6,B7}:-0.612184671716;ATF4:-0.614126864757;NFE2L2:-0.62641585045;GTF2I:-0.63545220014;RUNX1..3:-0.642527418458;IRF7:-0.656855050163;PAX3,7:-0.661347626946;PDX1:-0.664038274295;MEF2{A,B,C,D}:-0.67099215698;MYBL2:-0.685022659275;NFE2L1:-0.698834871691;PAX6:-0.719345901066;FOXN1:-0.744296010175;PITX1..3:-0.754934256709;TEF:-0.76510416364;AHR_ARNT_ARNT2:-0.766532024606;FOXO1,3,4:-0.771977383076;RFX2..5_RFXANK_RFXAP:-0.776262734304;NR3C1:-0.779563897049;PRRX1,2:-0.782827858004;RORA:-0.794460263499;NFIX:-0.802554808129;ATF2:-0.813895640041;CUX2:-0.819167090548;ZFP161:-0.83549534737;SRF:-0.838257512255;MED-1{core}:-0.88416616126;MAFB:-0.886234685877;TGIF1:-0.936464227235;MYFfamily:-0.991004582093;ALX1:-1.03082119485;CDX1,2,4:-1.0319028677;FOXA2:-1.0377606119;TOPORS:-1.15845913641;BREu{core}:-1.16865021423;NFATC1..3:-1.16977727615;FOXP1:-1.17754061503;STAT1,3:-1.18387028385;DMAP1_NCOR{1,2}_SMARC:-1.20823548582;SOX5:-1.21420509183;ZNF384:-1.21838292342;TAL1_TCF{3,4,12}:-1.21986003243;ALX4:-1.22985502897;PATZ1:-1.26536824786;EVI1:-1.26858537575;IRF1,2:-1.28107376309;HMGA1,2:-1.28843058813;EGR1..3:-1.37176199256;PAX4:-1.41627897054;NKX3-1:-1.43880637504;GATA4:-1.44163583658;PRDM1:-1.45332593106;XBP1:-1.45860567874;NKX2-1,4:-1.46727105348;MZF1:-1.47194119149;SREBF1,2:-1.49241311685;MTE{core}:-1.51407934818;IKZF2:-1.51418060629;FOXP3:-1.52522123221;ATF6:-1.54311771788;FOX{D1,D2}:-1.55458003967;NKX6-1,2:-1.57021295066;DBP:-1.71033568299;HBP1_HMGB_SSRP1_UBTF:-1.74724130726;BPTF:-1.94121199602;FOXD3:-2.01668583146 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11453-119A4;search_select_hide=table117:FF:11453-119A4 | |||
}} | }} | ||
Latest revision as of 18:02, 4 June 2020
| Name: | Bronchial Epithelial Cell, donor4 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12054 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12054
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12054
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.434 |
| 10 | 10 | 0.77 |
| 100 | 100 | 0.183 |
| 101 | 101 | 0.00547 |
| 102 | 102 | 0.28 |
| 103 | 103 | 0.219 |
| 104 | 104 | 0.575 |
| 105 | 105 | 0.163 |
| 106 | 106 | 0.264 |
| 107 | 107 | 0.344 |
| 108 | 108 | 0.837 |
| 109 | 109 | 1.58616e-4 |
| 11 | 11 | 0.0463 |
| 110 | 110 | 0.0168 |
| 111 | 111 | 0.594 |
| 112 | 112 | 0.63 |
| 113 | 113 | 0.528 |
| 114 | 114 | 0.45 |
| 115 | 115 | 0.333 |
| 116 | 116 | 0.142 |
| 117 | 117 | 0.175 |
| 118 | 118 | 0.688 |
| 119 | 119 | 0.212 |
| 12 | 12 | 0.303 |
| 120 | 120 | 0.06 |
| 121 | 121 | 0.38 |
| 122 | 122 | 0.0166 |
| 123 | 123 | 0.56 |
| 124 | 124 | 0.566 |
| 125 | 125 | 0.676 |
| 126 | 126 | 0.437 |
| 127 | 127 | 0.107 |
| 128 | 128 | 0.983 |
| 129 | 129 | 0.114 |
| 13 | 13 | 0.00426 |
| 130 | 130 | 0.414 |
| 131 | 131 | 0.253 |
| 132 | 132 | 0.602 |
| 133 | 133 | 0.0029 |
| 134 | 134 | 0.191 |
| 135 | 135 | 0.769 |
| 136 | 136 | 0.0956 |
| 137 | 137 | 0.378 |
| 138 | 138 | 0.968 |
| 139 | 139 | 0.718 |
| 14 | 14 | 0.941 |
| 140 | 140 | 0.91 |
| 141 | 141 | 0.966 |
| 142 | 142 | 0.0592 |
| 143 | 143 | 0.923 |
| 144 | 144 | 0.123 |
| 145 | 145 | 0.852 |
| 146 | 146 | 0.0113 |
| 147 | 147 | 0.141 |
| 148 | 148 | 0.618 |
| 149 | 149 | 0.949 |
| 15 | 15 | 0.635 |
| 150 | 150 | 0.539 |
| 151 | 151 | 0.518 |
| 152 | 152 | 0.111 |
| 153 | 153 | 0.597 |
| 154 | 154 | 0.312 |
| 155 | 155 | 0.402 |
| 156 | 156 | 0.276 |
| 157 | 157 | 0.731 |
| 158 | 158 | 0.316 |
| 159 | 159 | 0.795 |
| 16 | 16 | 0.153 |
| 160 | 160 | 0.0854 |
| 161 | 161 | 0.0894 |
| 162 | 162 | 0.625 |
| 163 | 163 | 0.481 |
| 164 | 164 | 0.467 |
| 165 | 165 | 0.647 |
| 166 | 166 | 0.57 |
| 167 | 167 | 0.719 |
| 168 | 168 | 0.518 |
| 169 | 169 | 0.0716 |
| 17 | 17 | 0.112 |
| 18 | 18 | 0.525 |
| 19 | 19 | 0.806 |
| 2 | 2 | 0.126 |
| 20 | 20 | 0.971 |
| 21 | 21 | 0.973 |
| 22 | 22 | 0.157 |
| 23 | 23 | 0.973 |
| 24 | 24 | 0.0398 |
| 25 | 25 | 0.623 |
| 26 | 26 | 0.0721 |
| 27 | 27 | 0.224 |
| 28 | 28 | 0.849 |
| 29 | 29 | 0.223 |
| 3 | 3 | 0.618 |
| 30 | 30 | 0.12 |
| 31 | 31 | 0.644 |
| 32 | 32 | 0.968 |
| 33 | 33 | 0.142 |
| 34 | 34 | 0.772 |
| 35 | 35 | 0.502 |
| 36 | 36 | 0.0794 |
| 37 | 37 | 0.248 |
| 38 | 38 | 0.132 |
| 39 | 39 | 0.604 |
| 4 | 4 | 0.593 |
| 40 | 40 | 0.00154 |
| 41 | 41 | 0.669 |
| 42 | 42 | 0.624 |
| 43 | 43 | 0.666 |
| 44 | 44 | 0.673 |
| 45 | 45 | 0.21 |
| 46 | 46 | 0.391 |
| 47 | 47 | 0.149 |
| 48 | 48 | 0.042 |
| 49 | 49 | 0.955 |
| 5 | 5 | 0.577 |
| 50 | 50 | 0.506 |
| 51 | 51 | 0.808 |
| 52 | 52 | 0.431 |
| 53 | 53 | 0.587 |
| 54 | 54 | 0.893 |
| 55 | 55 | 0.523 |
| 56 | 56 | 0.364 |
| 57 | 57 | 0.369 |
| 58 | 58 | 0.784 |
| 59 | 59 | 0.0539 |
| 6 | 6 | 0.231 |
| 60 | 60 | 0.228 |
| 61 | 61 | 0.489 |
| 62 | 62 | 0.899 |
| 63 | 63 | 0.279 |
| 64 | 64 | 0.166 |
| 65 | 65 | 0.326 |
| 66 | 66 | 0.206 |
| 67 | 67 | 0.965 |
| 68 | 68 | 0.911 |
| 69 | 69 | 0.337 |
| 7 | 7 | 0.203 |
| 70 | 70 | 0.0684 |
| 71 | 71 | 0.1 |
| 72 | 72 | 0.951 |
| 73 | 73 | 0.0402 |
| 74 | 74 | 0.041 |
| 75 | 75 | 0.206 |
| 76 | 76 | 0.719 |
| 77 | 77 | 0.0293 |
| 78 | 78 | 0.0594 |
| 79 | 79 | 0.467 |
| 8 | 8 | 0.141 |
| 80 | 80 | 0.729 |
| 81 | 81 | 0.965 |
| 82 | 82 | 0.774 |
| 83 | 83 | 0.993 |
| 84 | 84 | 0.732 |
| 85 | 85 | 0.899 |
| 86 | 86 | 0.919 |
| 87 | 87 | 0.00712 |
| 88 | 88 | 0.774 |
| 89 | 89 | 0.0607 |
| 9 | 9 | 0.642 |
| 90 | 90 | 0.00702 |
| 91 | 91 | 0.694 |
| 92 | 92 | 0.81 |
| 93 | 93 | 0.831 |
| 94 | 94 | 0.835 |
| 95 | 95 | 0.00644 |
| 96 | 96 | 0.654 |
| 97 | 97 | 0.712 |
| 98 | 98 | 0.205 |
| 99 | 99 | 0.0543 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12054
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000082 (epithelial cell of lung)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0002328 (bronchial epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002048 (lung)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004802 (respiratory tract epithelium)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000485 (simple columnar epithelium)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0004807 (respiratory system epithelium)
0004815 (lower respiratory tract epithelium)
0000117 (respiratory tube)
0000171 (respiration organ)
0000115 (lung epithelium)
0000464 (anatomical space)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0002031 (epithelium of bronchus)
0002185 (bronchus)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0000170 (pair of lungs)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000015 (human bronchial epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
