FF:11527-119I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005596 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005596 | ||
|accession_numbers=CAGE;DRX008316;DRR009188;DRZ000613;DRZ001998;DRZ011963;DRZ013348 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037059;DRR041425;DRZ007067 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000970,UBERON:0000019,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0000047,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0000020,UBERON:0003566,UBERON:0003891,UBERON:0001032,UBERON:0010317,UBERON:0000964,UBERON:0001777,UBERON:0004088,UBERON:0000153,UBERON:0007811,UBERON:0002104,UBERON:0001801,UBERON:0010409,UBERON:0004456,UBERON:0001456,UBERON:0010230 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002363 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000084 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.71!508.26!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.67!56.04!FOXF1;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.51!HIF3A;;chr2:239756671..239756732,+!p1@TWIST2!1.44!82.76!TWIST2;;chr6:34204921..34204939,+!p3@HMGA1!1.42!732.74!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!126.41!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.42!68.09!TWIST1;;chr20:55204351..55204377,+!p1@TFAP2C!1.39!29.65!TFAP2C;;chr4:111558135..111558198,-!p2@PITX2!1.38!22.81!PITX2;;chr5:2751762..2751784,-!p1@IRX2!1.36!21.83!IRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.35!21.50!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.28!23.78!PRRX2;;chr2:239756739..239756755,+!p2@TWIST2!1.26!29.00!TWIST2;;chr6:1389789..1389821,+!p1@FOXF2!1.20!20.53!FOXF2;;chr20:42543441..42543497,+!p1@TOX2!1.18!62.56!TOX2;;chr3:138665937..138665968,-!p1@FOXL2!1.16!13.36!FOXL2;;chr17:46132044..46132080,+!p4@NFE2L1!1.14!12.71!NFE2L1;;chr14:61116183..61116208,-!p1@SIX1!1.13!47.89!SIX1;;chr4:111544219..111544240,-!p1@PITX2!1.13!12.38!PITX2;;chr1:170633348..170633399,+!p2@PRRX1!1.10!15.96!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!1.09!301.05!FOSL1;;chr16:86600870..86600921,+!p2@FOXC2!1.08!11.08!FOXC2;;chr5:321810..321877,+!p1@AHRR!1.07!34.21!AHRR;;chr11:615570..615721,-!p2@IRF7!1.06!20.85!IRF7;;chr11:46299539..46299620,+!p2@CREB3L1!1.06!17.92!CREB3L1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.06!10.43!POU3F3;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.73!BNC1;;chr6:50786591..50786614,+!p1@TFAP2B!1.05!10.10!TFAP2B;;chr12:66218255..66218304,+!p3@HMGA2!1.02!26.06!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!0.97!33.23!FOSL1;;chr11:113930425..113930471,+!p1@ZBTB16!0.97!12.05!ZBTB16;;chr7:19157043..19157088,-!p2@TWIST1!0.96!21.18!TWIST1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.96!12.38!ZNF853;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!10.10!TFAP2A;;chr8:60031619..60031676,-!p1@TOX!0.95!17.59!TOX;;chr10:119303078..119303169,+!p2@EMX2!0.95!7.82!EMX2;;chr17:41622765..41622821,-!p2@ETV4!0.94!12.05!ETV4;;chr11:65687222..65687240,+!p7@DRAP1!0.94!10.10!DRAP1;;chr8:60031682..60031710,-!p2@TOX!0.93!12.38!TOX;;chr7:28448965..28448994,+!p2@CREB5!0.91!26.39!CREB5;;chr17:41623009..41623053,-!p4@ETV4!0.91!11.73!ETV4;;chr8:60031762..60031803,-!p3@TOX!0.90!10.43!TOX;;chr6:85473156..85473210,-!p2@TBX18!0.90!8.47!TBX18;;chr11:63684602..63684664,-!p1@RCOR2!0.89!14.01!RCOR2;;chr7:44143925..44143970,+!p1@AEBP1!0.88!156.71!AEBP1;;chr6:85474299..85474324,-!p1@TBX18!0.88!12.05!TBX18;;chr5:2751785..2751808,-!p2@IRX2!0.88!6.52!IRX2;;chr5:3595977..3595999,+!p1@IRX1!0.88!6.52!IRX1;;chr3:185826855..185826911,-!p1@ETV5!0.86!179.85!ETV5;;chr12:66218598..66218645,+!p2@HMGA2!0.84!29.32!HMGA2;;chr11:113930291..113930339,+!p2@ZBTB16!0.84!10.10!ZBTB16;;chr8:93074803..93074845,-!p1@RUNX1T1!0.84!5.86!RUNX1T1;;chr15:57511609..57511651,+!p2@TCF12!0.83!10.10!TCF12;;chr8:60031809..60031835,-!p4@TOX!0.83!7.49!TOX;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.83!7.49!PRDM11;;chr21:40177845..40177863,+!p1@ETS2!0.82!355.13!ETS2;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.82!DRAP1;;chr16:86600426..86600441,+!p1@FOXC2!0.80!14.01!FOXC2;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.36!TOX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.79!5.21!RUNX1T1;;chr18:52969844..52969895,-!p27@TCF4!0.79!5.21!TCF4;;chr11:64764435..64764449,-!p1@BATF2!0.78!7.17!BATF2;;chr11:615942..615957,-!p1@IRF7!0.77!50.83!IRF7;;chr5:72744594..72744609,-!p1@FOXD1!0.77!24.11!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.47!FOXD1;;chr17:8027418..8027432,-!p1@HES7!0.77!4.89!HES7;;chr12:85673977..85674015,+!p1@ALX1!0.77!4.89!ALX1;;chr12:57914286..57914304,-!p1@DDIT3!0.76!190.92!DDIT3;;chr3:185826286..185826318,-!p5@ETV5!0.76!5.54!ETV5;;chr11:65686952..65686975,+!p5@DRAP1!0.75!28.02!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.74!5.21!TFAP2A;;chr8:72756063..72756125,-!p1@MSC!0.73!9.45!MSC;;chr17:41622925..41622976,-!p3@ETV4!0.73!6.84!ETV4;;chr6:34204973..34204990,+!p4@HMGA1!0.72!63.86!HMGA1;;chr18:3451646..3451691,+!p3@TGIF1!0.72!12.38!TGIF1;;chr14:74256787..74256858,-!p6@C14orf43!0.72!4.24!C14orf43;;chr2:5832508..5832524,+!p1@SOX11!0.72!4.24!SOX11;;chr3:138665969..138665993,-!p2@FOXL2!0.72!4.24!FOXL2;;chr2:46524537..46524553,+!p1@EPAS1!0.70!451.90!EPAS1;;chr11:65687158..65687216,+!p4@DRAP1!0.70!25.74!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.70!6.52!ZBTB38;;chr12:10875351..10875422,-!p4@CSDA!0.69!8.15!CSDA;;chr16:54964740..54964789,+!p1@IRX5!0.69!5.86!IRX5;;chr1:2985726..2985752,+!p2@PRDM16!0.69!3.91!PRDM16;;chr5:3595961..3595975,+!p3@IRX1!0.69!3.91!IRX1;;chr6:41562324..41562340,+!p16@FOXP4!0.69!3.91!FOXP4;;chr8:60031934..60031986,-!p6@TOX!0.69!3.91!TOX;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.67!42.68!GLIS2;;chr11:65687362..65687436,+!p3@DRAP1!0.67!19.22!DRAP1;;chr17:59477233..59477263,+!p1@TBX2!0.67!12.71!TBX2;;chr20:48807779..48807802,+!p10@CEBPB!0.67!6.52!CEBPB;;chr6:34204672..34204692,+!p1@HMGA1!0.66!466.88!HMGA1;;chr22:38598086..38598105,+!p1@MAFF!0.66!44.31!MAFF;;chr19:45260775..45260838,+!p5@BCL3!0.66!4.89!BCL3;;chr1:2985760..2985774,+!p1@PRDM16!0.66!3.58!PRDM16;;chr9:129376201..129376225,+!p1@LMX1B!0.66!3.58!LMX1B;;chr11:65101305..65101359,+!p1@DPF2!0.65!160.62!DPF2;;chr2:231084639..231084654,-!p2@SP110!0.65!6.19!SP110;;chr16:54320101..54320125,-!p4@IRX3!0.65!5.21!IRX3;;chr1:170632959..170632987,+!p4@PRRX1!0.65!3.91!PRRX1;;chr18:3450161..3450183,+!p1@TGIF1!0.64!134.88!TGIF1;;chr5:178368186..178368238,+!p1@ZNF454!0.64!6.52!ZNF454;;chr12:66218378..66218401,+!p6@HMGA2!0.64!5.54!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!0.64!3.91!PRRX1;;chr1:170633262..170633285,+!p3@PRRX1!0.64!3.91!PRRX1;;chr8:48650715..48650735,-!p1@CEBPD!0.63!501.74!CEBPD;;chr6:35464817..35464894,-!p1@TEAD3!0.63!59.30!TEAD3;;chr3:128206762..128206781,-!p2@GATA2!0.63!23.78!GATA2;;chr21:40177892..40177903,+!p2@ETS2!0.63!14.99!ETS2;;chr9:110250697..110250738,-!p2@KLF4!0.63!3.91!KLF4;;chr1:170632250..170632277,+!p7@PRRX1!0.63!3.26!PRRX1;;chr12:2986206..2986258,-!p2@FOXM1!0.62!22.48!FOXM1;;chr1:25256756..25256774,-!p1@RUNX3!0.62!6.52!RUNX3;;chr16:54320158..54320200,-!p5@IRX3!0.62!4.89!IRX3;;chr12:56753869..56753930,-!p1@STAT2!0.61!162.90!STAT2;;chr21:47063625..47063658,+!p1@PCBP3!0.61!15.64!PCBP3;;chr3:12329397..12329433,+!p2@PPARG!0.61!7.82!PPARG;;chr14:24630902..24630948,+!p2@IRF9!0.61!3.91!IRF9;;chr14:61116168..61116180,-!p2@SIX1!0.61!3.58!SIX1;;chr17:38474489..38474548,+!p1@RARA!0.60!114.68!RARA;;chr19:19303731..19303783,+!p1@RFXANK!0.60!86.01!RFXANK;;chr9:110252035..110252057,-!p1@KLF4!0.60!57.67!KLF4;;chr3:52001448..52001478,-!p2@PCBP4!0.60!50.17!PCBP4;;chr11:62369108..62369183,-!p3@MTA2!0.60!46.92!MTA2;;chr5:92918919..92918942,+!p1@NR2F1!0.60!15.64!NR2F1;;chr3:12329358..12329393,+!p3@PPARG!0.60!8.47!PPARG;;chr5:43067636..43067674,+!p6@ZNF131!0.60!4.24!ZNF131;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.60!3.26!GLIS1;;chr17:46126136..46126152,+!p1@NFE2L1!0.59!183.76!NFE2L1;;chr20:48807875..48807982,+!p2@CEBPB!0.59!76.89!CEBPB;;chr8:72756667..72756736,-!p2@MSC!0.59!4.89!MSC;;chr5:3595934..3595957,+!p2@IRX1!0.59!2.93!IRX1;;chr16:54320127..54320148,-!p6@IRX3!0.59!2.93!IRX3;;chr17:41622982..41623001,-!p11@ETV4!0.59!2.93!ETV4;;chr18:52969674..52969685,-!p24@TCF4!0.59!2.93!TCF4;;chr3:12329464..12329472,+!p6@PPARG!0.59!2.93!PPARG;;chr11:45202609..45202623,+!p@chr11:45202609..45202623,+!0.59!2.93!PRDM11;;chr12:57853634..57853662,+!p2@GLI1!0.59!2.93!GLI1;;chr19:50432453..50432468,+!p1@ATF5!0.58!196.46!ATF5;;chr17:7590797..7590815,-!p1@TP53!0.58!152.48!TP53;;chr3:187463248..187463264,-!p1@BCL6!0.58!74.28!BCL6;;chr12:26277956..26277980,-!p1@BHLHE41!0.58!12.05!BHLHE41;;chr7:150946015..150946070,-!p3@SMARCD3!0.58!6.84!SMARCD3;;chr2:200323414..200323455,-!p1@SATB2!0.58!6.84!SATB2;;chr15:42749722..42749739,-!p2@ZFP106!0.58!5.54!ZFP106;;chr6:10412600..10412637,-!p1@TFAP2A!0.58!5.21!TFAP2A;;chr7:139762641..139762768,-!p1@PARP12!0.57!46.26!PARP12;;chr3:185826764..185826803,-!p2@ETV5!0.57!12.05!ETV5;;chr12:66218212..66218244,+!p5@HMGA2!0.57!4.24!HMGA2;;chr17:59477275..59477286,+!p3@TBX2!0.57!3.91!TBX2;;chr1:43148716..43148756,+!p6@YBX1!0.57!3.58!YBX1;;chr1:8938766..8938774,-!p2@ENO1!0.56!229.04!ENO1;;chr19:6424783..6424802,-!p2@KHSRP!0.56!67.44!KHSRP;;chr19:39390587..39390646,+!p1@NFKBIB!0.56!52.46!NFKBIB;;chr12:53625966..53626012,-!p2@RARG!0.56!8.15!RARG;;chr16:8962202..8962222,-!p3@CARHSP1!0.56!5.21!CARHSP1;;chr19:49864746..49864780,-!p2@TEAD2!0.56!3.91!TEAD2;;chr7:100076873..100076880,-!p6@TSC22D4!0.56!3.26!TSC22D4;;chr6:1389989..1390019,+!p2@FOXF2!0.56!2.61!FOXF2;;chr7:73038839..73038862,-!p1@MLXIPL!0.56!2.61!MLXIPL;;chr7:97840743..97840786,+!p1@BHLHA15!0.56!2.61!BHLHA15;;chr12:53625846..53625861,-!p6@RARG!0.56!2.61!RARG;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.56!2.61!POU3F3;;chr3:141121820..141121838,+!p9@ZBTB38!0.56!2.61!ZBTB38;;chr1:110613276..110613299,-!p2@ALX3!0.56!2.61!ALX3;;chr19:3366570..3366619,+!p1@NFIC!0.55!103.61!NFIC;;chr14:75894714..75894733,+!p1@JDP2!0.55!91.88!JDP2;;chr2:231084659..231084721,-!p1@SP110!0.55!75.91!SP110;;chr6:126102292..126102329,+!p3@NCOA7!0.55!10.10!NCOA7;;chr18:3449586..3449617,+!p8@TGIF1!0.55!4.56!TGIF1;;chr1:8926441..8926473,-!p10@ENO1!0.55!4.24!ENO1;;chr20:48807351..48807384,+!p1@CEBPB!0.54!325.16!CEBPB;;chr19:6424813..6424835,-!p1@KHSRP!0.54!197.11!KHSRP;;chr9:94186101..94186122,-!p1@NFIL3!0.54!43.66!NFIL3;;chr8:48650697..48650708,-!p2@CEBPD!0.54!23.78!CEBPD;;chr19:20188776..20188826,+!p1@ZNF90!0.54!7.82!ZNF90;;chr8:72756637..72756664,-!p3@MSC!0.54!2.93!MSC;;chr3:71179699..71179744,-!p2@FOXP1!0.53!22.81!FOXP1;;chr17:46621937..46621966,-!p2@HOXB2!0.53!7.82!HOXB2;;chr17:46622229..46622257,-!p6@HOXB2!0.53!2.93!HOXB2;;chr8:128748308..128748324,+!p2@MYC!0.52!83.41!MYC;;chr18:47807845..47807918,-!p1@MBD1!0.52!52.13!MBD1;;chr7:148892653..148892729,+!p1@ZNF282!0.52!43.66!ZNF282;;chr9:94186131..94186174,-!p2@NFIL3!0.52!24.44!NFIL3;;chr14:21994337..21994442,-!p1@SALL2!0.52!7.82!SALL2;;chr18:3450293..3450304,+!p4@TG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| |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.71!508.26!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.67!56.04!FOXF1;;chr19:46801639..46801699,+!p1@HIF3A!1.56!35.51!HIF3A;;chr2:239756671..239756732,+!p1@TWIST2!1.44!82.76!TWIST2;;chr6:34204921..34204939,+!p3@HMGA1!1.42!732.74!HMGA1;;chr11:46299199..46299233,+!p1@CREB3L1!1.42!126.41!CREB3L1;;chr7:19157248..19157268,-!p1@TWIST1!1.42!68.09!TWIST1;;chr20:55204351..55204377,+!p1@TFAP2C!1.39!29.65!TFAP2C;;chr4:111558135..111558198,-!p2@PITX2!1.38!22.81!PITX2;;chr5:2751762..2751784,-!p1@IRX2!1.36!21.83!IRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.35!21.50!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.28!23.78!PRRX2;;chr2:239756739..239756755,+!p2@TWIST2!1.26!29.00!TWIST2;;chr6:1389789..1389821,+!p1@FOXF2!1.20!20.53!FOXF2;;chr20:42543441..42543497,+!p1@TOX2!1.18!62.56!TOX2;;chr3:138665937..138665968,-!p1@FOXL2!1.16!13.36!FOXL2;;chr17:46132044..46132080,+!p4@NFE2L1!1.14!12.71!NFE2L1;;chr14:61116183..61116208,-!p1@SIX1!1.13!47.89!SIX1;;chr4:111544219..111544240,-!p1@PITX2!1.13!12.38!PITX2;;chr1:170633348..170633399,+!p2@PRRX1!1.10!15.96!PRRX1;;chr11:65667846..65667868,-!p1@FOSL1!1.09!301.05!FOSL1;;chr16:86600870..86600921,+!p2@FOXC2!1.08!11.08!FOXC2;;chr5:321810..321877,+!p1@AHRR!1.07!34.21!AHRR;;chr11:615570..615721,-!p2@IRF7!1.06!20.85!IRF7;;chr11:46299539..46299620,+!p2@CREB3L1!1.06!17.92!CREB3L1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.06!10.43!POU3F3;;chr15:83953397..83953425,-!p1@BNC1!1.05!11.73!BNC1;;chr6:50786591..50786614,+!p1@TFAP2B!1.05!10.10!TFAP2B;;chr12:66218255..66218304,+!p3@HMGA2!1.02!26.06!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!0.97!33.23!FOSL1;;chr11:113930425..113930471,+!p1@ZBTB16!0.97!12.05!ZBTB16;;chr7:19157043..19157088,-!p2@TWIST1!0.96!21.18!TWIST1;;chr7:6655225..6655279,+!p1@ENST00000457543!0.96!12.38!ZNF853;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!10.10!TFAP2A;;chr8:60031619..60031676,-!p1@TOX!0.95!17.59!TOX;;chr10:119303078..119303169,+!p2@EMX2!0.95!7.82!EMX2;;chr17:41622765..41622821,-!p2@ETV4!0.94!12.05!ETV4;;chr11:65687222..65687240,+!p7@DRAP1!0.94!10.10!DRAP1;;chr8:60031682..60031710,-!p2@TOX!0.93!12.38!TOX;;chr7:28448965..28448994,+!p2@CREB5!0.91!26.39!CREB5;;chr17:41623009..41623053,-!p4@ETV4!0.91!11.73!ETV4;;chr8:60031762..60031803,-!p3@TOX!0.90!10.43!TOX;;chr6:85473156..85473210,-!p2@TBX18!0.90!8.47!TBX18;;chr11:63684602..63684664,-!p1@RCOR2!0.89!14.01!RCOR2;;chr7:44143925..44143970,+!p1@AEBP1!0.88!156.71!AEBP1;;chr6:85474299..85474324,-!p1@TBX18!0.88!12.05!TBX18;;chr5:2751785..2751808,-!p2@IRX2!0.88!6.52!IRX2;;chr5:3595977..3595999,+!p1@IRX1!0.88!6.52!IRX1;;chr3:185826855..185826911,-!p1@ETV5!0.86!179.85!ETV5;;chr12:66218598..66218645,+!p2@HMGA2!0.84!29.32!HMGA2;;chr11:113930291..113930339,+!p2@ZBTB16!0.84!10.10!ZBTB16;;chr8:93074803..93074845,-!p1@RUNX1T1!0.84!5.86!RUNX1T1;;chr15:57511609..57511651,+!p2@TCF12!0.83!10.10!TCF12;;chr8:60031809..60031835,-!p4@TOX!0.83!7.49!TOX;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.83!7.49!PRDM11;;chr21:40177845..40177863,+!p1@ETS2!0.82!355.13!ETS2;;chr11:65687243..65687276,+!p8@DRAP1!0.82!7.82!DRAP1;;chr16:86600426..86600441,+!p1@FOXC2!0.80!14.01!FOXC2;;chr20:42543506..42543549,+!p2@TOX2!0.79!13.36!TOX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.79!5.21!RUNX1T1;;chr18:52969844..52969895,-!p27@TCF4!0.79!5.21!TCF4;;chr11:64764435..64764449,-!p1@BATF2!0.78!7.17!BATF2;;chr11:615942..615957,-!p1@IRF7!0.77!50.83!IRF7;;chr5:72744594..72744609,-!p1@FOXD1!0.77!24.11!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.47!FOXD1;;chr17:8027418..8027432,-!p1@HES7!0.77!4.89!HES7;;chr12:85673977..85674015,+!p1@ALX1!0.77!4.89!ALX1;;chr12:57914286..57914304,-!p1@DDIT3!0.76!190.92!DDIT3;;chr3:185826286..185826318,-!p5@ETV5!0.76!5.54!ETV5;;chr11:65686952..65686975,+!p5@DRAP1!0.75!28.02!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.74!5.21!TFAP2A;;chr8:72756063..72756125,-!p1@MSC!0.73!9.45!MSC;;chr17:41622925..41622976,-!p3@ETV4!0.73!6.84!ETV4;;chr6:34204973..34204990,+!p4@HMGA1!0.72!63.86!HMGA1;;chr18:3451646..3451691,+!p3@TGIF1!0.72!12.38!TGIF1;;chr14:74256787..74256858,-!p6@C14orf43!0.72!4.24!C14orf43;;chr2:5832508..5832524,+!p1@SOX11!0.72!4.24!SOX11;;chr3:138665969..138665993,-!p2@FOXL2!0.72!4.24!FOXL2;;chr2:46524537..46524553,+!p1@EPAS1!0.70!451.90!EPAS1;;chr11:65687158..65687216,+!p4@DRAP1!0.70!25.74!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.70!6.52!ZBTB38;;chr12:10875351..10875422,-!p4@CSDA!0.69!8.15!CSDA;;chr16:54964740..54964789,+!p1@IRX5!0.69!5.86!IRX5;;chr1:2985726..2985752,+!p2@PRDM16!0.69!3.91!PRDM16;;chr5:3595961..3595975,+!p3@IRX1!0.69!3.91!IRX1;;chr6:41562324..41562340,+!p16@FOXP4!0.69!3.91!FOXP4;;chr8:60031934..60031986,-!p6@TOX!0.69!3.91!TOX;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.67!42.68!GLIS2;;chr11:65687362..65687436,+!p3@DRAP1!0.67!19.22!DRAP1;;chr17:59477233..59477263,+!p1@TBX2!0.67!12.71!TBX2;;chr20:48807779..48807802,+!p10@CEBPB!0.67!6.52!CEBPB;;chr6:34204672..34204692,+!p1@HMGA1!0.66!466.88!HMGA1;;chr22:38598086..38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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000133;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002363;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000964;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001801;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002342;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003891;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157 | |||
|ffid_belonging_in_development=CL:0000133,CL:0000134,CL:0000221,CL:0000008 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor1.CNhs11337.11527-119I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor1.CNhs11337.11527-119I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor1.CNhs11337.11527-119I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor1.CNhs11337.11527-119I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratocytes%252c%2520donor1.CNhs11337.11527-119I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11527-119I6 | |id=FF:11527-119I6 | ||
|is_a=EFO:0002091;;FF:0000084 | |is_a=EFO:0002091;;FF:0000084 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11337 | |||
|library_id_phase_based=2:CNhs11337 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11527 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10005.GCCAAT.11527 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11527 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10005.GCCAAT.11527 | |||
|name=Keratocytes, donor1 | |name=Keratocytes, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11337,LSID768,release014,COMPLETED | |profile_hcage=CNhs11337,LSID768,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10005,,, | |profile_srnaseq=SRhi10005,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0378372948292622,0,0.142435313787245,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.147759072234396,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.419797445980759,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0212628584604581,0,0,0,-0.0625791608309809,-0.0300284446625304,0,0,0,0,-0.0980353512377064,-0.0772368331723335,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.035133226293899,0,0,0,0,-0.0300789111476054,0,0,0,0,0,0 | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=SC6525 | |rna_catalog_number=SC6525 | ||
| Line 57: | Line 82: | ||
|rna_tube_id=119I6 | |rna_tube_id=119I6 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10005.GCCAAT | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 79: | Line 106: | ||
|top_motifs=bHLH_family:1.82063488014;GTF2A1,2:1.44789600353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37079695304;LHX3,4:1.2956175113;HOX{A6,A7,B6,B7}:1.2654545821;RXR{A,B,G}:1.24351315152;ZNF238:1.20178506656;EBF1:1.10589218577;CRX:1.00339842039;NR1H4:0.966426681978;TP53:0.960654607899;HES1:0.843849667591;TBX4,5:0.81979253853;TFAP4:0.817377606751;NR3C1:0.812042649082;CEBPA,B_DDIT3:0.807824448642;GZF1:0.807660402501;ESR1:0.79494971077;NFIX:0.771838533655;TLX1..3_NFIC{dimer}:0.758588825838;PBX1:0.69184879407;HOX{A5,B5}:0.652455446153;ZNF148:0.649977315876;TEF:0.623208973653;HLF:0.620722476443;TFAP2{A,C}:0.573085788792;STAT5{A,B}:0.548834159382;POU1F1:0.477255173176;SOX17:0.453422976384;PRRX1,2:0.443046800566;RREB1:0.441305578336;GFI1B:0.438878827278;RXRA_VDR{dimer}:0.433340248026;TFDP1:0.381462180952;TEAD1:0.380873299042;ZIC1..3:0.370994883693;IRF7:0.370555455423;LEF1_TCF7_TCF7L1,2:0.368763529222;SOX5:0.367452479748;POU2F1..3:0.358037723419;ZNF423:0.35588325796;ZBTB6:0.34975134338;PATZ1:0.348505442083;NKX2-2,8:0.344445430127;EN1,2:0.33961375303;GLI1..3:0.32984512687;NR5A1,2:0.327770509834;TFAP2B:0.326660887797;HAND1,2:0.309797833357;FOXA2:0.28508329586;ELK1,4_GABP{A,B1}:0.277434801165;GTF2I:0.259041912365;NR6A1:0.207547776393;PDX1:0.203330774231;MYB:0.198401060049;NFE2:0.192307514542;GFI1:0.188460178121;YY1:0.183916085786;NKX2-3_NKX2-5:0.180618508807;BACH2:0.153145130047;NANOG:0.149411627449;TAL1_TCF{3,4,12}:0.143207322137;KLF4:0.142960970183;XBP1:0.133909997766;HNF4A_NR2F1,2:0.129807950058;FOX{F1,F2,J1}:0.124263348012;RORA:0.0915474898546;NFE2L2:0.0883434727416;HIC1:0.0855539431078;FOX{I1,J2}:0.0782738694301;ALX1:0.0755271251692;ADNP_IRX_SIX_ZHX:0.0646225903368;LMO2:0.0621647026646;PAX8:0.0590668771714;FOS_FOS{B,L1}_JUN{B,D}:0.0586335249621;PAX5:0.0585976882847;TFCP2:0.0570929356366;XCPE1{core}:0.0511376214612;NKX3-1:0.05001380567;MZF1:0.0411188298881;CUX2:0.0394331576706;MYBL2:0.0376985225248;MYOD1:0.0303632032723;FOSL2:0.0268036486007;SRF:0.0215346129056;PAX1,9:0.0167080897802;GATA6:0.00776711762362;NFE2L1:0.00632605887996;ONECUT1,2:-0.00666900374878;SP1:-0.00671708601258;PAX3,7:-0.0190252959438;RFX1:-0.0218699493489;HNF1A:-0.0309358345408;TOPORS:-0.0347188470856;JUN:-0.0365016755836;ZNF143:-0.0449480844283;HIF1A:-0.0503469395553;AHR_ARNT_ARNT2:-0.0602791209705;IRF1,2:-0.061023724554;HOX{A4,D4}:-0.0928396743025;CDX1,2,4:-0.0941942542045;AR:-0.0942104104363;SREBF1,2:-0.111473378725;NFIL3:-0.113459821549;FOXM1:-0.117956638577;ALX4:-0.121493994755;IKZF1:-0.121768857186;TBP:-0.125556857796;MTF1:-0.139053100824;MED-1{core}:-0.163911685068;NFATC1..3:-0.174720957696;STAT2,4,6:-0.175117630506;RUNX1..3:-0.17735854883;TLX2:-0.188458044472;SPZ1:-0.191147704643;ESRRA:-0.199244102818;VSX1,2:-0.20835293325;NFKB1_REL_RELA:-0.208693175592;NFY{A,B,C}:-0.211006244284;MAZ:-0.211394235937;MEF2{A,B,C,D}:-0.225011186894;HOXA9_MEIS1:-0.254017103587;CDC5L:-0.262002317708;UFEwm:-0.264869398211;EVI1:-0.267325303047;SNAI1..3:-0.27671094031;CREB1:-0.279623960096;FOXD3:-0.284149212725;FOXO1,3,4:-0.288684383828;PRDM1:-0.289723682117;ATF6:-0.292822119838;GCM1,2:-0.311551303995;MTE{core}:-0.315971492239;OCT4_SOX2{dimer}:-0.325855840626;TGIF1:-0.337905798593;REST:-0.345510109294;ATF4:-0.35301978053;MYFfamily:-0.36423982283;POU5F1:-0.372426538551;HBP1_HMGB_SSRP1_UBTF:-0.374761084008;NKX6-1,2:-0.378038745355;POU6F1:-0.380329855017;SOX{8,9,10}:-0.386390910395;NHLH1,2:-0.403244758875;POU3F1..4:-0.435075941013;RFX2..5_RFXANK_RFXAP:-0.450889907997;SPIB:-0.451992542039;BREu{core}:-0.46097892896;ATF2:-0.469314312428;NKX2-1,4:-0.495438973813;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.52047565194;FOXQ1:-0.521002409855;AIRE:-0.521161117154;E2F1..5:-0.524292090982;PPARG:-0.529094067798;NANOG{mouse}:-0.530482409369;SPI1:-0.530802446966;NRF1:-0.546779740237;ARID5B:-0.553642556514;ETS1,2:-0.579476944103;EGR1..3:-0.588135019192;ZNF384:-0.59369327071;DBP:-0.59825991719;T:-0.604665944574;PAX4:-0.60558601316;NKX3-2:-0.62749149718;FOX{D1,D2}:-0.634966698258;HMX1:-0.636374943603;ATF5_CREB3:-0.657933212555;BPTF:-0.661350052034;ZEB1:-0.67037001181;FOXL1:-0.686491171142;FOXP3:-0.712376978745;HMGA1,2:-0.727115741758;SOX2:-0.727368784362;PITX1..3:-0.734616633154;ELF1,2,4:-0.762939337651;PAX6:-0.812151196896;DMAP1_NCOR{1,2}_SMARC:-0.815491323065;STAT1,3:-0.86899839862;EP300:-0.880369300438;RBPJ:-0.899753842227;FOXP1:-0.923243083764;ZFP161:-0.933812277475;MAFB:-0.953577118925;PAX2:-0.959086260827;SMAD1..7,9:-1.00698173214;GATA4:-1.03303079221;HSF1,2:-1.03911305831;IKZF2:-1.14811816189;ZBTB16:-1.32562024065;FOXN1:-1.81931146469 | |top_motifs=bHLH_family:1.82063488014;GTF2A1,2:1.44789600353;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.37079695304;LHX3,4:1.2956175113;HOX{A6,A7,B6,B7}:1.2654545821;RXR{A,B,G}:1.24351315152;ZNF238:1.20178506656;EBF1:1.10589218577;CRX:1.00339842039;NR1H4:0.966426681978;TP53:0.960654607899;HES1:0.843849667591;TBX4,5:0.81979253853;TFAP4:0.817377606751;NR3C1:0.812042649082;CEBPA,B_DDIT3:0.807824448642;GZF1:0.807660402501;ESR1:0.79494971077;NFIX:0.771838533655;TLX1..3_NFIC{dimer}:0.758588825838;PBX1:0.69184879407;HOX{A5,B5}:0.652455446153;ZNF148:0.649977315876;TEF:0.623208973653;HLF:0.620722476443;TFAP2{A,C}:0.573085788792;STAT5{A,B}:0.548834159382;POU1F1:0.477255173176;SOX17:0.453422976384;PRRX1,2:0.443046800566;RREB1:0.441305578336;GFI1B:0.438878827278;RXRA_VDR{dimer}:0.433340248026;TFDP1:0.381462180952;TEAD1:0.380873299042;ZIC1..3:0.370994883693;IRF7:0.370555455423;LEF1_TCF7_TCF7L1,2:0.368763529222;SOX5:0.367452479748;POU2F1..3:0.358037723419;ZNF423:0.35588325796;ZBTB6:0.34975134338;PATZ1:0.348505442083;NKX2-2,8:0.344445430127;EN1,2:0.33961375303;GLI1..3:0.32984512687;NR5A1,2:0.327770509834;TFAP2B:0.326660887797;HAND1,2:0.309797833357;FOXA2:0.28508329586;ELK1,4_GABP{A,B1}:0.277434801165;GTF2I:0.259041912365;NR6A1:0.207547776393;PDX1:0.203330774231;MYB:0.198401060049;NFE2:0.192307514542;GFI1:0.188460178121;YY1:0.183916085786;NKX2-3_NKX2-5:0.180618508807;BACH2:0.153145130047;NANOG:0.149411627449;TAL1_TCF{3,4,12}:0.143207322137;KLF4:0.142960970183;XBP1:0.133909997766;HNF4A_NR2F1,2:0.129807950058;FOX{F1,F2,J1}:0.124263348012;RORA:0.0915474898546;NFE2L2:0.0883434727416;HIC1:0.0855539431078;FOX{I1,J2}:0.0782738694301;ALX1:0.0755271251692;ADNP_IRX_SIX_ZHX:0.0646225903368;LMO2:0.0621647026646;PAX8:0.0590668771714;FOS_FOS{B,L1}_JUN{B,D}:0.0586335249621;PAX5:0.0585976882847;TFCP2:0.0570929356366;XCPE1{core}:0.0511376214612;NKX3-1:0.05001380567;MZF1:0.0411188298881;CUX2:0.0394331576706;MYBL2:0.0376985225248;MYOD1:0.0303632032723;FOSL2:0.0268036486007;SRF:0.0215346129056;PAX1,9:0.0167080897802;GATA6:0.00776711762362;NFE2L1:0.00632605887996;ONECUT1,2:-0.00666900374878;SP1:-0.00671708601258;PAX3,7:-0.0190252959438;RFX1:-0.0218699493489;HNF1A:-0.0309358345408;TOPORS:-0.0347188470856;JUN:-0.0365016755836;ZNF143:-0.0449480844283;HIF1A:-0.0503469395553;AHR_ARNT_ARNT2:-0.0602791209705;IRF1,2:-0.061023724554;HOX{A4,D4}:-0.0928396743025;CDX1,2,4:-0.0941942542045;AR:-0.0942104104363;SREBF1,2:-0.111473378725;NFIL3:-0.113459821549;FOXM1:-0.117956638577;ALX4:-0.121493994755;IKZF1:-0.121768857186;TBP:-0.125556857796;MTF1:-0.139053100824;MED-1{core}:-0.163911685068;NFATC1..3:-0.174720957696;STAT2,4,6:-0.175117630506;RUNX1..3:-0.17735854883;TLX2:-0.188458044472;SPZ1:-0.191147704643;ESRRA:-0.199244102818;VSX1,2:-0.20835293325;NFKB1_REL_RELA:-0.208693175592;NFY{A,B,C}:-0.211006244284;MAZ:-0.211394235937;MEF2{A,B,C,D}:-0.225011186894;HOXA9_MEIS1:-0.254017103587;CDC5L:-0.262002317708;UFEwm:-0.264869398211;EVI1:-0.267325303047;SNAI1..3:-0.27671094031;CREB1:-0.279623960096;FOXD3:-0.284149212725;FOXO1,3,4:-0.288684383828;PRDM1:-0.289723682117;ATF6:-0.292822119838;GCM1,2:-0.311551303995;MTE{core}:-0.315971492239;OCT4_SOX2{dimer}:-0.325855840626;TGIF1:-0.337905798593;REST:-0.345510109294;ATF4:-0.35301978053;MYFfamily:-0.36423982283;POU5F1:-0.372426538551;HBP1_HMGB_SSRP1_UBTF:-0.374761084008;NKX6-1,2:-0.378038745355;POU6F1:-0.380329855017;SOX{8,9,10}:-0.386390910395;NHLH1,2:-0.403244758875;POU3F1..4:-0.435075941013;RFX2..5_RFXANK_RFXAP:-0.450889907997;SPIB:-0.451992542039;BREu{core}:-0.46097892896;ATF2:-0.469314312428;NKX2-1,4:-0.495438973813;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.52047565194;FOXQ1:-0.521002409855;AIRE:-0.521161117154;E2F1..5:-0.524292090982;PPARG:-0.529094067798;NANOG{mouse}:-0.530482409369;SPI1:-0.530802446966;NRF1:-0.546779740237;ARID5B:-0.553642556514;ETS1,2:-0.579476944103;EGR1..3:-0.588135019192;ZNF384:-0.59369327071;DBP:-0.59825991719;T:-0.604665944574;PAX4:-0.60558601316;NKX3-2:-0.62749149718;FOX{D1,D2}:-0.634966698258;HMX1:-0.636374943603;ATF5_CREB3:-0.657933212555;BPTF:-0.661350052034;ZEB1:-0.67037001181;FOXL1:-0.686491171142;FOXP3:-0.712376978745;HMGA1,2:-0.727115741758;SOX2:-0.727368784362;PITX1..3:-0.734616633154;ELF1,2,4:-0.762939337651;PAX6:-0.812151196896;DMAP1_NCOR{1,2}_SMARC:-0.815491323065;STAT1,3:-0.86899839862;EP300:-0.880369300438;RBPJ:-0.899753842227;FOXP1:-0.923243083764;ZFP161:-0.933812277475;MAFB:-0.953577118925;PAX2:-0.959086260827;SMAD1..7,9:-1.00698173214;GATA4:-1.03303079221;HSF1,2:-1.03911305831;IKZF2:-1.14811816189;ZBTB16:-1.32562024065;FOXN1:-1.81931146469 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11527-119I6;search_select_hide=table117:FF:11527-119I6 | |||
}} | }} | ||
Latest revision as of 18:06, 4 June 2020
| Name: | Keratocytes, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11337 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11337
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11337
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.844 |
| 10 | 10 | 0.792 |
| 100 | 100 | 0.61 |
| 101 | 101 | 0.657 |
| 102 | 102 | 0.42 |
| 103 | 103 | 0.434 |
| 104 | 104 | 0.0537 |
| 105 | 105 | 0.0859 |
| 106 | 106 | 0.0711 |
| 107 | 107 | 0.0131 |
| 108 | 108 | 0.841 |
| 109 | 109 | 0.0106 |
| 11 | 11 | 0.0372 |
| 110 | 110 | 0.101 |
| 111 | 111 | 0.994 |
| 112 | 112 | 0.63 |
| 113 | 113 | 0.263 |
| 114 | 114 | 0.73 |
| 115 | 115 | 0.815 |
| 116 | 116 | 0.0657 |
| 117 | 117 | 0.31 |
| 118 | 118 | 0.516 |
| 119 | 119 | 0.928 |
| 12 | 12 | 0.731 |
| 120 | 120 | 0.598 |
| 121 | 121 | 0.778 |
| 122 | 122 | 0.311 |
| 123 | 123 | 0.189 |
| 124 | 124 | 0.576 |
| 125 | 125 | 0.479 |
| 126 | 126 | 0.99 |
| 127 | 127 | 0.901 |
| 128 | 128 | 0.555 |
| 129 | 129 | 0.749 |
| 13 | 13 | 0.302 |
| 130 | 130 | 0.105 |
| 131 | 131 | 0.72 |
| 132 | 132 | 0.444 |
| 133 | 133 | 0.0112 |
| 134 | 134 | 0.216 |
| 135 | 135 | 0.948 |
| 136 | 136 | 0.807 |
| 137 | 137 | 0.258 |
| 138 | 138 | 0.74 |
| 139 | 139 | 0.947 |
| 14 | 14 | 0.836 |
| 140 | 140 | 0.337 |
| 141 | 141 | 0.659 |
| 142 | 142 | 0.237 |
| 143 | 143 | 0.482 |
| 144 | 144 | 0.962 |
| 145 | 145 | 0.318 |
| 146 | 146 | 0.0451 |
| 147 | 147 | 0.576 |
| 148 | 148 | 0.863 |
| 149 | 149 | 0.924 |
| 15 | 15 | 0.49 |
| 150 | 150 | 0.259 |
| 151 | 151 | 0.661 |
| 152 | 152 | 0.0583 |
| 153 | 153 | 0.347 |
| 154 | 154 | 0.166 |
| 155 | 155 | 0.32 |
| 156 | 156 | 0.358 |
| 157 | 157 | 0.0486 |
| 158 | 158 | 0.52 |
| 159 | 159 | 0.579 |
| 16 | 16 | 0.186 |
| 160 | 160 | 0.0436 |
| 161 | 161 | 0.607 |
| 162 | 162 | 0.0439 |
| 163 | 163 | 0.809 |
| 164 | 164 | 0.368 |
| 165 | 165 | 0.236 |
| 166 | 166 | 0.675 |
| 167 | 167 | 0.897 |
| 168 | 168 | 0.92 |
| 169 | 169 | 0.1 |
| 17 | 17 | 0.161 |
| 18 | 18 | 6.73356e-4 |
| 19 | 19 | 0.118 |
| 2 | 2 | 0.55 |
| 20 | 20 | 0.536 |
| 21 | 21 | 0.335 |
| 22 | 22 | 0.135 |
| 23 | 23 | 0.257 |
| 24 | 24 | 0.249 |
| 25 | 25 | 0.317 |
| 26 | 26 | 0.184 |
| 27 | 27 | 0.612 |
| 28 | 28 | 0.507 |
| 29 | 29 | 0.886 |
| 3 | 3 | 0.393 |
| 30 | 30 | 0.172 |
| 31 | 31 | 0.252 |
| 32 | 32 | 0.175 |
| 33 | 33 | 0.0796 |
| 34 | 34 | 0.0873 |
| 35 | 35 | 0.344 |
| 36 | 36 | 0.894 |
| 37 | 37 | 0.0469 |
| 38 | 38 | 0.663 |
| 39 | 39 | 0.395 |
| 4 | 4 | 0.635 |
| 40 | 40 | 0.0333 |
| 41 | 41 | 0.483 |
| 42 | 42 | 0.565 |
| 43 | 43 | 0.0842 |
| 44 | 44 | 0.147 |
| 45 | 45 | 0.252 |
| 46 | 46 | 0.174 |
| 47 | 47 | 0.16 |
| 48 | 48 | 0.0694 |
| 49 | 49 | 0.0648 |
| 5 | 5 | 0.575 |
| 50 | 50 | 0.235 |
| 51 | 51 | 0.342 |
| 52 | 52 | 0.447 |
| 53 | 53 | 0.667 |
| 54 | 54 | 0.337 |
| 55 | 55 | 0.636 |
| 56 | 56 | 0.128 |
| 57 | 57 | 0.318 |
| 58 | 58 | 0.329 |
| 59 | 59 | 0.0437 |
| 6 | 6 | 0.837 |
| 60 | 60 | 0.137 |
| 61 | 61 | 0.226 |
| 62 | 62 | 0.671 |
| 63 | 63 | 0.159 |
| 64 | 64 | 0.0631 |
| 65 | 65 | 0.0326 |
| 66 | 66 | 0.248 |
| 67 | 67 | 0.889 |
| 68 | 68 | 0.207 |
| 69 | 69 | 0.0364 |
| 7 | 7 | 0.986 |
| 70 | 70 | 0.00569 |
| 71 | 71 | 0.474 |
| 72 | 72 | 0.472 |
| 73 | 73 | 0.0258 |
| 74 | 74 | 0.963 |
| 75 | 75 | 0.375 |
| 76 | 76 | 0.902 |
| 77 | 77 | 0.018 |
| 78 | 78 | 0.595 |
| 79 | 79 | 0.684 |
| 8 | 8 | 0.105 |
| 80 | 80 | 0.815 |
| 81 | 81 | 0.467 |
| 82 | 82 | 0.887 |
| 83 | 83 | 0.198 |
| 84 | 84 | 0.641 |
| 85 | 85 | 0.0732 |
| 86 | 86 | 0.986 |
| 87 | 87 | 0.233 |
| 88 | 88 | 0.0888 |
| 89 | 89 | 0.0828 |
| 9 | 9 | 0.262 |
| 90 | 90 | 0.196 |
| 91 | 91 | 0.935 |
| 92 | 92 | 0.634 |
| 93 | 93 | 0.752 |
| 94 | 94 | 0.121 |
| 95 | 95 | 0.161 |
| 96 | 96 | 0.644 |
| 97 | 97 | 0.258 |
| 98 | 98 | 0.698 |
| 99 | 99 | 0.0112 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11337
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000084 human keratocyte sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002363 (keratocyte)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000970 (eye)
0000019 (camera-type eye)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000047 (simple eye)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0000020 (sense organ)
0003566 (head connective tissue)
0003891 (stroma)
0001032 (sensory system)
0010317 (germ layer / neural crest derived structure)
0000964 (cornea)
0001777 (substantia propria of cornea)
0004088 (ocular region)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002104 (visual system)
0001801 (anterior segment of eyeball)
0010409 (eye surface)
0004456 (entire sense organ system)
0001456 (face)
0010230 (eyeball of camera-type eye)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000084 (human keratocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000134 (mesenchymal cell)
CL:0000221 (ectodermal cell)
CL:0000008 (migratory cranial neural crest cell)
