FF:11595-120H2: Difference between revisions

Latest revision as of 18:10, 4 June 2020

Name:	Renal Proximal Tubular Epithelial Cell, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12087
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	NA
age	NA
cell type	epithelial cell of kidney, proximal tubule
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	lot:5110
catalog number	SC4105
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005220

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12087		CAGE		DRX008438		DRR009310

Accession ID Hg19

Library id		BAM		CTSS
CNhs12087		DRZ000735		DRZ002120

Accession ID Hg38

Library id		BAM		CTSS
CNhs12087		DRZ012085		DRZ013470

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005220

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10014.CGTACG		sRNA-Seq		DRX037244		DRR041610

Accession ID Hg19

Library id		BAM		CTSS
SRhi10014.CGTACG		DRZ007252

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0149
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.063
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.095
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.397
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.126
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.105
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0432
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.636
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.414
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0149
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.437
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12087

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.466
MA0003.1	MA0003.1	0.295
MA0004.1	MA0004.1	0.541
MA0006.1	MA0006.1	0.0728
MA0007.1	MA0007.1	0.0806
MA0009.1	MA0009.1	0.278
MA0014.1	MA0014.1	0.43
MA0017.1	MA0017.1	0.00783
MA0018.2	MA0018.2	0.517
MA0019.1	MA0019.1	0.508
MA0024.1	MA0024.1	0.156
MA0025.1	MA0025.1	0.182
MA0027.1	MA0027.1	0.996
MA0028.1	MA0028.1	0.062
MA0029.1	MA0029.1	0.422
MA0030.1	MA0030.1	0.42
MA0031.1	MA0031.1	0.0292
MA0035.2	MA0035.2	0.0651
MA0038.1	MA0038.1	0.105
MA0039.2	MA0039.2	0.0173
MA0040.1	MA0040.1	0.52
MA0041.1	MA0041.1	0.293
MA0042.1	MA0042.1	0.756
MA0043.1	MA0043.1	0.0573
MA0046.1	MA0046.1	4.80796e-20
MA0047.2	MA0047.2	0.612
MA0048.1	MA0048.1	0.486
MA0050.1	MA0050.1	0.02
MA0051.1	MA0051.1	0.215
MA0052.1	MA0052.1	0.0552
MA0055.1	MA0055.1	0.215
MA0057.1	MA0057.1	0.0903
MA0058.1	MA0058.1	0.386
MA0059.1	MA0059.1	0.35
MA0060.1	MA0060.1	5.2846e-4
MA0061.1	MA0061.1	0.428
MA0062.2	MA0062.2	0.00266
MA0065.2	MA0065.2	0.00757
MA0066.1	MA0066.1	0.168
MA0067.1	MA0067.1	0.114
MA0068.1	MA0068.1	0.369
MA0069.1	MA0069.1	0.352
MA0070.1	MA0070.1	0.164
MA0071.1	MA0071.1	0.0604
MA0072.1	MA0072.1	0.793
MA0073.1	MA0073.1	0.985
MA0074.1	MA0074.1	0.613
MA0076.1	MA0076.1	0.00196
MA0077.1	MA0077.1	0.723
MA0078.1	MA0078.1	0.756
MA0079.2	MA0079.2	0.581
MA0080.2	MA0080.2	0.00295
MA0081.1	MA0081.1	0.0905
MA0083.1	MA0083.1	0.712
MA0084.1	MA0084.1	0.00163
MA0087.1	MA0087.1	0.444
MA0088.1	MA0088.1	0.773
MA0090.1	MA0090.1	0.00305
MA0091.1	MA0091.1	0.831
MA0092.1	MA0092.1	0.562
MA0093.1	MA0093.1	0.53
MA0099.2	MA0099.2	2.55505e-8
MA0100.1	MA0100.1	0.135
MA0101.1	MA0101.1	0.505
MA0102.2	MA0102.2	0.0348
MA0103.1	MA0103.1	7.56379e-8
MA0104.2	MA0104.2	0.825
MA0105.1	MA0105.1	0.998
MA0106.1	MA0106.1	0.117
MA0107.1	MA0107.1	0.275
MA0108.2	MA0108.2	8.30472e-7
MA0111.1	MA0111.1	0.472
MA0112.2	MA0112.2	0.0356
MA0113.1	MA0113.1	0.813
MA0114.1	MA0114.1	0.0319
MA0115.1	MA0115.1	0.101
MA0116.1	MA0116.1	0.535
MA0117.1	MA0117.1	0.146
MA0119.1	MA0119.1	0.612
MA0122.1	MA0122.1	0.175
MA0124.1	MA0124.1	0.834
MA0125.1	MA0125.1	0.293
MA0131.1	MA0131.1	0.0737
MA0135.1	MA0135.1	0.219
MA0136.1	MA0136.1	9.94843e-4
MA0137.2	MA0137.2	0.0683
MA0138.2	MA0138.2	0.537
MA0139.1	MA0139.1	0.393
MA0140.1	MA0140.1	0.267
MA0141.1	MA0141.1	0.00721
MA0142.1	MA0142.1	0.712
MA0143.1	MA0143.1	0.511
MA0144.1	MA0144.1	0.684
MA0145.1	MA0145.1	0.0593
MA0146.1	MA0146.1	0.122
MA0147.1	MA0147.1	0.975
MA0148.1	MA0148.1	0.739
MA0149.1	MA0149.1	0.0547
MA0150.1	MA0150.1	0.483
MA0152.1	MA0152.1	0.222
MA0153.1	MA0153.1	1.2713e-8
MA0154.1	MA0154.1	0.194
MA0155.1	MA0155.1	0.132
MA0156.1	MA0156.1	0.00921
MA0157.1	MA0157.1	0.0863
MA0159.1	MA0159.1	0.0251
MA0160.1	MA0160.1	0.0481
MA0162.1	MA0162.1	0.111
MA0163.1	MA0163.1	0.908
MA0164.1	MA0164.1	0.89
MA0258.1	MA0258.1	0.192
MA0259.1	MA0259.1	0.363

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12087

Novel motif	Logo	P-value
1	1	0.801
10	10	0.484
100	100	0.477
101	101	0.0169
102	102	0.476
103	103	0.352
104	104	0.539
105	105	0.109
106	106	0.0169
107	107	0.0252
108	108	0.347
109	109	0.0541
11	11	0.175
110	110	0.388
111	111	0.954
112	112	0.971
113	113	0.167
114	114	0.605
115	115	0.669
116	116	0.812
117	117	0.687
118	118	0.342
119	119	0.195
12	12	0.59
120	120	0.546
121	121	0.777
122	122	0.0741
123	123	0.134
124	124	0.218
125	125	0.917
126	126	0.478
127	127	0.154
128	128	0.189
129	129	0.0212
13	13	0.19
130	130	0.521
131	131	0.173
132	132	0.119
133	133	0.0994
134	134	0.239
135	135	0.502
136	136	0.289
137	137	0.142
138	138	0.621
139	139	0.881
14	14	0.444
140	140	0.793
141	141	0.817
142	142	0.469
143	143	0.74
144	144	0.712
145	145	0.359
146	146	0.0347
147	147	0.272
148	148	0.296
149	149	0.164
15	15	0.476
150	150	0.292
151	151	0.406
152	152	0.0565
153	153	0.675
154	154	0.329
155	155	0.827
156	156	0.0558
157	157	0.187
158	158	0.832
159	159	0.98
16	16	0.154
160	160	0.123
161	161	0.599
162	162	0.0574
163	163	0.295
164	164	0.692
165	165	0.491
166	166	0.664
167	167	0.45
168	168	0.505
169	169	0.133
17	17	0.345
18	18	0.273
19	19	0.446
2	2	0.134
20	20	0.895
21	21	0.445
22	22	0.245
23	23	0.0985
24	24	0.974
25	25	0.971
26	26	0.134
27	27	0.234
28	28	0.701
29	29	0.857
3	3	0.832
30	30	0.08
31	31	0.462
32	32	0.924
33	33	0.142
34	34	0.427
35	35	0.259
36	36	0.952
37	37	0.544
38	38	0.192
39	39	0.162
4	4	0.0761
40	40	0.00418
41	41	0.641
42	42	0.831
43	43	0.448
44	44	0.28
45	45	0.201
46	46	0.484
47	47	0.74
48	48	0.387
49	49	0.66
5	5	0.815
50	50	0.272
51	51	0.557
52	52	0.259
53	53	0.725
54	54	0.457
55	55	0.632
56	56	0.316
57	57	0.402
58	58	0.84
59	59	0.06
6	6	0.13
60	60	0.182
61	61	0.553
62	62	0.912
63	63	0.173
64	64	0.192
65	65	0.0536
66	66	0.2
67	67	0.899
68	68	0.742
69	69	0.0504
7	7	0.475
70	70	0.98
71	71	0.917
72	72	0.846
73	73	0.0765
74	74	0.291
75	75	0.974
76	76	0.114
77	77	0.00869
78	78	0.478
79	79	0.941
8	8	0.25
80	80	0.224
81	81	0.566
82	82	0.986
83	83	0.488
84	84	0.812
85	85	0.499
86	86	0.808
87	87	0.0369
88	88	0.604
89	89	0.103
9	9	0.615
90	90	0.0764
91	91	0.835
92	92	0.56
93	93	0.726
94	94	0.946
95	95	0.169
96	96	0.555
97	97	0.843
98	98	0.511
99	99	0.00724

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12087

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000155 human renal proximal tubular epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000255 (eukaryotic cell)
0000239 (brush border epithelial cell)
1000615 (kidney cortex tubule cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
0002306 (epithelial cell of proximal tubule)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0006853 (renal cortex tubule)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0007685 (region of nephron tubule)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0004134 (proximal tubule)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000155 (human renal proximal tubular epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005220
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005220
+|accession_numbers=CAGE;DRX008438;DRR009310;DRZ000735;DRZ002120;DRZ012085;DRZ013470
+|accession_numbers_RNASeq=sRNA-Seq;DRX037244;DRR041610;DRZ007252
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.09!121.34!ELF3;;chr1:201979703..201979721,+!p2@ELF3!2.07!116.35!ELF3;;chr2:114036488..114036504,-!p1@PAX8!2.03!106.38!PAX8;;chr1:209979467..209979494,-!p1@IRF6!1.88!83.11!IRF6;;chr17:46703687..46703740,-!p1@HOXB9!1.77!57.34!HOXB9;;chr17:36105042..36105060,-!p1@HNF1B!1.62!40.72!HNF1B;;chr17:46675558..46675577,-!p2@HOXB6!1.52!32.41!HOXB6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.52!32.41!TFCP2L1;;chr6:10415276..10415341,-!p2@TFAP2A!1.45!33.24!TFAP2A;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.45!27.43!POU3F3;;chr7:27205106..27205134,-!p2@HOXA9!1.43!25.76!HOXA9;;chr6:34204921..34204939,+!p3@HMGA1!1.41!712.23!HMGA1;;chr17:46622205..46622218,-!p3@HOXB2!1.41!28.26!HOXB2;;chr7:27205136..27205164,-!p1@HOXA9!1.37!22.44!HOXA9;;chr6:134210243..134210257,+!p1@TCF21!1.35!21.61!TCF21;;chr17:46682321..46682362,-!p1@HOXB6!1.34!20.78!HOXB6;;chr6:1312325..1312340,+!p1@FOXQ1!1.27!28.26!FOXQ1;;chr6:10415484..10415508,-!p3@TFAP2A!1.25!16.62!TFAP2A;;chr17:46703826..46703845,-!p3@HOXB9!1.25!16.62!HOXB9;;chr17:46667594..46667619,-!p1@HOXB3!1.23!15.79!HOXB3;;chr17:46622440..46622477,-!p5@HOXB2!1.22!17.45!HOXB2;;chr17:46675420..46675465,-!p3@HOXB6!1.21!17.45!HOXB6;;chr15:83953397..83953425,-!p1@BNC1!1.19!16.62!BNC1;;chr6:10412600..10412637,-!p1@TFAP2A!1.16!22.44!TFAP2A;;chr2:176994408..176994492,+!p1@HOXD8!1.16!13.30!HOXD8;;chr17:46690839..46690884,-!p1@HOXB8!1.13!12.47!HOXB8;;chr17:46622229..46622257,-!p6@HOXB2!1.12!14.13!HOXB2;;chr2:46524897..46524911,+!p2@EPAS1!1.10!32.41!EPAS1;;chr2:177053386..177053402,+!p1@HOXD1!1.10!11.64!HOXD1;;chr17:41623692..41623715,-!p1@ETV4!1.06!44.88!ETV4;;chr17:46132044..46132080,+!p4@NFE2L1!1.04!9.97!NFE2L1;;chr17:46703528..46703549,-!p5@HOXB9!1.01!9.14!HOXB9;;chr11:34642612..34642646,+!p1@EHF!1.01!9.14!EHF;;chr1:24645832..24645853,+!p1@GRHL3!1.01!9.14!GRHL3;;chr6:34204672..34204692,+!p1@HMGA1!1.00!1026.38!HMGA1;;chr17:46622070..46622109,-!p1@HOXB2!0.99!19.95!HOXB2;;chr17:7493405..7493419,-!p1@SOX15!0.97!8.31!SOX15;;chr1:209979411..209979433,-!p2@IRF6!0.97!8.31!IRF6;;chr10:8096631..8096660,+!p1@GATA3!0.96!9.97!GATA3;;chr11:65686802..65686818,+!p6@DRAP1!0.93!13.30!DRAP1;;chr10:102505493..102505546,+!p2@PAX2!0.93!7.48!PAX2;;chr2:73144617..73144654,+!p1@EMX1!0.93!7.48!EMX1;;chr3:111314186..111314204,-!p1@ZBED2!0.93!7.48!ZBED2;;chr7:27213893..27213954,-!p1@HOXA10!0.93!7.48!HOXA10;;chr11:65686732..65686756,+!p2@DRAP1!0.92!32.41!DRAP1;;chr17:46688334..46688385,-!p1@HOXB7!0.89!9.97!HOXB7;;chr1:935398..935465,-!p2@HES4!0.88!14.13!HES4;;chr1:24645921..24645973,+!p2@GRHL3!0.88!6.65!GRHL3;;chr1:6479968..6479986,-!p1@HES2!0.88!6.65!HES2;;chr21:38071430..38071456,+!p1@SIM2!0.88!6.65!SIM2;;chr5:2751762..2751784,-!p1@IRX2!0.88!6.65!IRX2;;chr2:176987463..176987479,+!p2@HOXD9!0.88!6.65!HOXD9;;chr2:96012397..96012417,+!p3@KCNIP3!0.88!6.65!KCNIP3;;chr17:46692457..46692484,-!p2@HOXB8!0.88!6.65!HOXB8;;chr10:8096772..8096787,+!p2@GATA3!0.86!7.48!GATA3;;chr20:42295745..42295765,+!p1@MYBL2!0.84!103.05!MYBL2;;chr17:46687959..46688007,-!p2@HOXB7!0.84!8.31!HOXB7;;chr17:46675586..46675600,-!p6@HOXB6!0.83!5.82!HOXB6;;chr6:10419824..10419840,-!p9@TFAP2A!0.83!5.82!TFAP2A;;chr7:27224842..27224872,-!p1@HOXA11!0.83!5.82!HOXA11;;chr11:65554528..65554546,+!p1@OVOL1!0.83!5.82!OVOL1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.83!5.82!POU3F3;;chr2:95963052..95963106,+!p1@KCNIP3!0.83!5.82!KCNIP3;;chr10:104155480..104155534,+!p2@NFKB2!0.80!37.40!NFKB2;;chr19:926001..926046,+!p1@ARID3A!0.80!19.95!ARID3A;;chr12:7079780..7079791,-!p2@PHB2!0.79!29.09!PHB2;;chr12:66218255..66218304,+!p3@HMGA2!0.79!14.96!HMGA2;;chr17:46621937..46621966,-!p2@HOXB2!0.79!14.96!HOXB2;;chr7:128577972..128578047,+!p1@IRF5!0.78!8.31!IRF5;;chr12:66218212..66218244,+!p5@HMGA2!0.78!7.48!HMGA2;;chr6:50786591..50786614,+!p1@TFAP2B!0.78!4.99!TFAP2B;;chr7:27192185..27192209,-!p1@HOXA3!0.78!4.99!HOXA3;;chr7:27224795..27224840,-!p2@HOXA11!0.78!4.99!HOXA11;;chr16:52581025..52581072,-!p1@TOX3!0.78!4.99!TOX3;;chr17:35294075..35294102,+!p1@ENST00000559335!0.78!4.99!LHX1;;chr2:177016535..177016548,+!p3@HOXD4!0.78!4.99!HOXD4;;chr13:73633131..73633149,+!p1@KLF5!0.76!55.68!KLF5;;chr17:70117153..70117174,+!p1@SOX9!0.76!54.02!SOX9;;chr2:239148671..239148686,-!p1@HES6!0.76!19.11!HES6;;chr20:31350184..31350200,+!p1@DNMT3B!0.74!9.97!DNMT3B;;chr6:21597765..21597779,+!p2@SOX4!0.73!39.06!SOX4;;chr10:104154246..104154347,+!p3@NFKB2!0.73!29.92!NFKB2;;chr3:12329397..12329433,+!p2@PPARG!0.73!10.80!PPARG;;chr17:46622114..46622138,-!p4@HOXB2!0.71!6.65!HOXB2;;chr10:8095593..8095625,+!p3@GATA3!0.71!4.99!GATA3;;chr10:119303078..119303169,+!p2@EMX2!0.71!4.16!EMX2;;chr12:54393880..54393962,+!p1@HOXC9!0.71!4.16!HOXC9;;chr17:46622175..46622186,-!p12@HOXB2!0.71!4.16!HOXB2;;chr17:46675539..46675551,-!p7@HOXB6!0.71!4.16!HOXB6;;chr17:46692603..46692621,-!p6@HOXB8!0.71!4.16!HOXB8;;chr17:46703942..46703964,-!p4@HOXB9!0.71!4.16!HOXB9;;chr19:46367576..46367592,+!p1@FOXA3!0.71!4.16!FOXA3;;chr1:24646002..24646013,+!p3@GRHL3!0.71!4.16!GRHL3;;chr21:38071403..38071428,+!p2@SIM2!0.71!4.16!SIM2;;chr2:176987441..176987454,+!p1@HOXD9!0.71!4.16!HOXD9;;chr6:50789717..50789729,+!p4@TFAP2B!0.71!4.16!TFAP2B;;chr7:27183263..27183284,-!p2@HOXA5!0.71!4.16!HOXA5;;chr7:27196217..27196246,-!p2@HOXA7!0.71!4.16!HOXA7;;chr7:27196267..27196311,-!p1@HOXA7!0.71!4.16!HOXA7;;chr7:28448965..28448994,+!p2@CREB5!0.70!15.79!CREB5;;chr7:27135591..27135658,-!p1@HOXA1!0.70!8.31!HOXA1;;chr17:41622834..41622883,-!p6@ETV4!0.70!4.99!ETV4;;chr19:45908292..45908374,-!p1@PPP1R13L!0.69!39.06!PPP1R13L;;chr6:21597370..21597408,+!p5@SOX4!0.69!6.65!SOX4;;chr18:3450161..3450183,+!p1@TGIF1!0.68!147.93!TGIF1;;chr6:44233252..44233296,-!p1@NFKBIE!0.68!42.38!NFKBIE;;chr15:96869255..96869291,+!p6@NR2F2!0.68!7.48!NR2F2;;chr17:40440225..40440268,+!p3@STAT5A!0.68!4.99!STAT5A;;chr17:41622925..41622976,-!p3@ETV4!0.67!5.82!ETV4;;chr12:66218183..66218209,+!p4@HMGA2!0.66!7.48!HMGA2;;chr17:41622765..41622821,-!p2@ETV4!0.66!5.82!ETV4;;chr1:935496..935509,-!p3@HES4!0.66!5.82!HES4;;chr9:110251836..110251887,-!p4@KLF4!0.66!4.99!KLF4;;chr22:21355865..21355886,-!p5@THAP7!0.66!4.16!THAP7;;chr1:935467..935484,-!p1@HES4!0.65!17.45!HES4;;chr11:615570..615721,-!p2@IRF7!0.65!7.48!IRF7;;chr20:50721803..50721857,-!p2@ZFP64!0.65!5.82!ZFP64;;chr6:21593973..21593988,+!p1@SOX4!0.64!142.95!SOX4;;chr17:41623009..41623053,-!p4@ETV4!0.64!5.82!ETV4;;chr15:96869165..96869183,+!p20@NR2F2!0.64!3.32!NR2F2;;chr17:36105074..36105086,-!p2@HNF1B!0.64!3.32!HNF1B;;chr17:45928443..45928473,-!p2@SP6!0.64!3.32!SP6;;chr17:46675469..46675481,-!p4@HOXB6!0.64!3.32!HOXB6;;chr17:46692318..46692362,-!p5@HOXB8!0.64!3.32!HOXB8;;chr6:100912752..100912778,-!p2@SIM1!0.64!3.32!SIM1;;chr6:10412576..10412599,-!p5@TFAP2A!0.64!3.32!TFAP2A;;chr6:10415263..10415274,-!p8@TFAP2A!0.64!3.32!TFAP2A;;chr7:27195867..27195893,-!p3@HOXA7!0.64!3.32!HOXA7;;chr7:27219833..27219845,-!p7@HOXA10!0.64!3.32!HOXA10;;chr7:27219849..27219867,-!p6@HOXA10!0.64!3.32!HOXA10;;chr7:97840743..97840786,+!p1@BHLHA15!0.64!3.32!BHLHA15;;chr11:65554563..65554576,+!p2@OVOL1!0.64!3.32!OVOL1;;chr2:176969228..176969260,+!p1@HOXD11!0.64!3.32!HOXD11;;chr2:177016336..177016350,+!p1@HOXD4!0.64!3.32!HOXD4;;chr2:5832508..5832524,+!p1@SOX11!0.64!3.32!SOX11;;chr1:212782094..212782109,+!p1@ATF3!0.63!107.21!ATF3;;chr16:8962544..8962584,-!p2@CARHSP1!0.63!8.31!CARHSP1;;chr2:74375081..74375092,-!p2@BOLA3!0.63!7.48!BOLA3;;chr11:65667846..65667868,-!p1@FOSL1!0.62!100.56!FOSL1;;chr11:61520075..61520136,+!p1@C11orf9!0.62!7.48!C11orf9;;chr6:36355513..36355578,-!p2@ETV7!0.62!4.16!ETV7;;chr9:117150303..117150312,-!p3@AKNA!0.61!4.16!AKNA;;chr22:42229246..42229270,+!p2@SREBF2!0.60!44.88!SREBF2;;chr8:145669791..145669834,-!p1@TONSL!0.60!9.97!TONSL;;chr3:12329358..12329393,+!p3@PPARG!0.60!8.31!PPARG;;chr12:66218378..66218401,+!p6@HMGA2!0.60!4.99!HMGA2;;chr19:45260775..45260838,+!p5@BCL3!0.60!4.16!BCL3;;chr11:65667884..65667895,-!p2@FOSL1!0.59!13.30!FOSL1;;chr17:46621101..46621143,-!p7@HOXB2!0.59!4.16!HOXB2;;chr12:66218836..66218888,+!p1@HMGA2!0.58!32.41!HMGA2;;chr20:42295713..42295738,+!p2@MYBL2!0.58!19.95!MYBL2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.57!244.34!TAX1BP3;;chr5:72744594..72744609,-!p1@FOXD1!0.57!14.96!FOXD1;;chr12:80084279..80084293,-!p8@PAWR!0.57!4.99!PAWR;;chr20:32274179..32274213,-!p1@E2F1!0.56!21.61!E2F1;;chr12:3069037..3069119,+!p2@TEAD4!0.56!10.80!TEAD4;;chr20:50159198..50159299,-!p1@NFATC2!0.56!4.16!NFATC2;;chr2:46524878..46524891,+!p3@EPAS1!0.55!4.99!EPAS1;;chr3:5021026..5021035,+!p5@BHLHE40!0.55!3.32!BHLHE40;;chr17:3571887..3571918,-!p2@TAX1BP3!0.54!34.91!TAX1BP3;;chr7:26191809..26191890,+!p1@NFE2L3!0.54!14.96!NFE2L3;;chr12:66218598..66218645,+!p2@HMGA2!0.54!14.13!HMGA2;;chr3:5021268..5021282,+!p4@BHLHE40!0.54!5.82!BHLHE40;;chr18:6414884..6414942,-!p1@L3MBTL4!0.54!3.32!L3MBTL4;;chr15:83953373..83953386,-!p2@BNC1!0.54!2.49!BNC1;;chr16:51185172..51185197,-!p1@SALL1!0.54!2.49!SALL1;;chr16:51185318..51185348,-!p2@SALL1!0.54!2.49!SALL1;;chr17:36104873..36104903,-!p3@HNF1B!0.54!2.49!HNF1B;;chr17:46675608..46675618,-!p10@HOXB6!0.54!2.49!HOXB6;;chr17:46675619..46675642,-!p5@HOXB6!0.54!2.49!HOXB6;;chr17:46687935..46687950,-!p3@HOXB7!0.54!2.49!HOXB7;;chr2:10091783..10091811,+!p2@GRHL1!0.54!2.49!GRHL1;;chr2:113982635..113982648,-!p8@PAX8!0.54!2.49!PAX8;;chr2:176969097..176969109,+!p3@HOXD11!0.54!2.49!HOXD11;;chr2:176972000..176972025,+!p4@HOXD11!0.54!2.49!HOXD11;;chr2:177001290..177001315,+!p1@HOXD3!0.54!2.49!HOXD3;;chr2:242556880..242556899,-!p5@THAP4!0.54!2.49!THAP4;;chr2:73144683..73144697,+!p3@EMX1!0.54!2.49!EMX1;;chr3:128212033..128212051,-!p1@GATA2!0.54!2.49!GATA2;;chr4:299227..299272,-!p1@ZNF732!0.54!2.49!ZNF732;;chr10:102505954..102505973,+!p3@PAX2!0.54!2.49!PAX2;;chr10:64018918..64018936,+!p2@ZNF365!0.54!2.49!ZNF365;;chr10:8100691..8100732,+!p5@GATA3!0.54!2.49!GATA3;;chr11:45202609..45202623,+!p@chr11:45202609..45202623,+!0.54!2.49!PRDM11;;chr11:65668011..65668020,-!p3@FOSL1!0.54!2.49!FOSL1;;chr12:54378923..54378966,+!p1@HOXC10!0.54!2.49!HOXC10;;chr12:54394309..54394336,+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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002584;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000615;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
 |ffid_belonging_in_development=CL:0000222
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg38.nobarcode.ctss.bed.gz
 |id=FF:11595-120H2
 |is_a=EFO:0002091;;FF:0000155
 |is_obsolete=
+|library_id=CNhs12087
+|library_id_phase_based=2:CNhs12087
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11595
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CGTACG.11595
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11595
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CGTACG.11595
 |name=Renal Proximal Tubular Epithelial Cell, donor2
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12087,LSID839,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10014,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=120
 |rna_catalog_number=SC4105
@@ Line 60: / Line 82: @@
 |rna_tube_id=120H2
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10014.CGTACG
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 82: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11595-120H2;search_select_hide=table117:FF:11595-120H2
 }}

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FF:11595-120H2: Difference between revisions

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Latest revision as of 18:10, 4 June 2020

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