FFCP PHASE1:Hg19::chr2:693380..693398,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:693380..693398,+ | |||
|description=CAGE_peak_at_chr2:693380..693398,+ | |description=CAGE_peak_at_chr2:693380..693398,+ | ||
|id=chr2:693380..693398,+ | |id=chr2:693380..693398,+ | ||
Latest revision as of 11:43, 29 July 2015
| Short description: | p@chr2:693380..693398, + |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_at_chr2:693380..693398, + |
| Coexpression cluster: | NA |
| Association with transcript: | NA |
| EntrezGene: | NA |
| HGNC: | NA |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p@chr2:693380..693398+ |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| kidney tubule cell | 6.34e-89 | 10 |
| nephron tubule epithelial cell | 6.34e-89 | 10 |
| epithelial cell of nephron | 1.05e-87 | 15 |
| kidney cell | 3.01e-77 | 17 |
| kidney epithelial cell | 3.01e-77 | 17 |
| kidney cortical cell | 4.80e-58 | 12 |
| renal cortical epithelial cell | 4.80e-58 | 12 |
| glomerular cell | 9.89e-26 | 7 |
| kidney corpuscule cell | 9.89e-26 | 7 |
| mesangial cell | 8.02e-24 | 2 |
Showing 1 to 10 of 19 entries
| Ontology term | p-value | n |
|---|---|---|
| excretory tube | 7.12e-98 | 16 |
| kidney epithelium | 7.12e-98 | 16 |
| nephron tubule epithelium | 6.34e-89 | 10 |
| nephron epithelium | 1.05e-87 | 15 |
| renal tubule | 1.05e-87 | 15 |
| nephron tubule | 1.05e-87 | 15 |
| nephron | 1.05e-87 | 15 |
| uriniferous tubule | 1.05e-87 | 15 |
| nephrogenic mesenchyme | 1.05e-87 | 15 |
| kidney | 3.13e-70 | 26 |
Showing 1 to 10 of 76 entries
| Ontology term | p-value | n |
|---|---|---|
| organ system benign neoplasm | 4.31e-12 | 1 |
| skin benign neoplasm | 4.31e-12 | 1 |
| integumentary system benign neoplasm | 4.31e-12 | 1 |
| dermis tumor | 4.31e-12 | 1 |
| cutaneous fibrous histiocytoma | 4.31e-12 | 1 |
Showing 1 to 5 of 5 entries
