FFCP PHASE1:Hg19::chr20:30307655..30307679,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr20:30307655..30307679,- to FFCP PHASE1:Hg19::chr20:30307655..30307679,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr20:30307655..30307679,- | |||
|description=CAGE_peak_at_chr20:30307655..30307679,- | |||
|id=chr20:30307655..30307679,- | |||
|ontology_enrichment_celltype=CL:0000066!1.07e-21!254;CL:1000497!1.89e-14!18;CL:0002518!1.89e-14!18;CL:1000449!2.42e-12!16;CL:0000223!1.37e-10!59;CL:1000507!2.29e-10!12;CL:1000494!2.29e-10!12;CL:0002681!6.15e-09!13;CL:0002584!6.15e-09!13;CL:0002076!4.47e-08!43 | |||
|ontology_enrichment_celltype_v019=CL:1000497;4.99e-25;17!CL:0002518;4.99e-25;17!CL:1000449;3.90e-23;15!CL:1000507;1.46e-21;10!CL:1000494;1.46e-21;10!CL:0002681;3.26e-13;12!CL:0002584;3.26e-13;12!CL:0000322;2.67e-07;3!CL:0000239;3.32e-07;3!CL:1000615;3.32e-07;3!CL:0002306;3.32e-07;3!CL:0002149;5.13e-07;6!CL:0002255;5.13e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,6.68e-25,17;CL:0002518,6.68e-25,17;CL:1000449,5.68e-23,15;CL:1000507,2.42e-21,10;CL:1000494,2.42e-21,10;CL:0000066,8.01e-17,253;CL:0002681,4.35e-13,12;CL:0002584,4.35e-13,12;CL:0000223,6.41e-09,58;CL:0002076,2.44e-07,42;CL:0000322,2.98e-07,3;CL:0000239,3.37e-07,3;CL:1000615,3.37e-07,3;CL:0002306,3.37e-07,3;CL:0002149,5.19e-07,6;CL:0002255,5.19e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0009497;4.02e-12;13!UBERON:0001041;8.78e-11;30!UBERON:0004161;9.21e-07;11 | |||
|ontology_enrichment_disease=DOID:305!2.28e-19!106;DOID:0050687!2.60e-14!143;DOID:299!1.43e-10!25;DOID:14566!7.91e-10!239;DOID:162!1.28e-09!235;DOID:120!8.28e-07!27 | |||
|ontology_enrichment_disease_v019=DOID:299;2.73e-23;25!DOID:3493;7.69e-11;2!DOID:3910;1.49e-10;2!DOID:4468;1.30e-09;2!DOID:305;1.50e-07;106!DOID:7;1.62e-07;39!DOID:3001;5.13e-07;6!DOID:0050615;5.42e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:299,2.50e-23,25;DOID:305,5.26e-19,106;DOID:0050687,6.14e-14,143;DOID:3493,7.53e-11,2;DOID:3910,1.76e-10,2;DOID:4468,1.19e-09,2;DOID:7,7.78e-08,39;DOID:162,5.05e-07,235;DOID:3001,5.19e-07,6;DOID:0050615,5.22e-07,16;DOID:14566,9.20e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000058!1.76e-13!26;UBERON:0004211!2.42e-12!16;UBERON:0001285!2.42e-12!16;UBERON:0007684!2.42e-12!16;UBERON:0003220!2.42e-12!16;UBERON:0004208!2.42e-12!16;UBERON:0000466!3.20e-12!126;UBERON:0006555!2.29e-11!17;UBERON:0005103!2.29e-11!17;UBERON:0000083!2.29e-11!17;UBERON:0009201!2.29e-11!17;UBERON:0004819!2.29e-11!17;UBERON:0006553!2.29e-11!17;UBERON:0003074!2.29e-11!17;UBERON:0003060!2.29e-11!17;UBERON:0005177!2.58e-11!107;UBERON:0009569!6.10e-11!113;UBERON:0000464!1.03e-10!104;UBERON:0002113!1.30e-10!27;UBERON:0003918!1.30e-10!27;UBERON:0005095!1.30e-10!27;UBERON:0007687!1.30e-10!27;UBERON:0000080!1.67e-10!18;UBERON:0002120!1.67e-10!18;UBERON:0004875!1.67e-10!18;UBERON:0005721!1.67e-10!18;UBERON:0005754!1.67e-10!18;UBERON:0007297!1.67e-10!18;UBERON:0009773!2.29e-10!12;UBERON:0001231!2.29e-10!12;UBERON:0004810!2.29e-10!12;UBERON:0000489!3.17e-09!32;UBERON:0004876!4.78e-09!20;UBERON:0006554!5.28e-09!44;UBERON:0001225!6.15e-09!13;UBERON:0008987!6.15e-09!13;UBERON:0005911!6.92e-09!82;UBERON:0001008!1.18e-08!45;UBERON:0003886!1.19e-08!63;UBERON:0003887!1.99e-08!21;UBERON:0003064!2.34e-08!37;UBERON:0005172!2.93e-08!55;UBERON:0005173!2.93e-08!55;UBERON:0001851!3.49e-08!16;UBERON:0002417!5.09e-08!61;UBERON:0000916!5.09e-08!61;UBERON:0002553!8.25e-08!70;UBERON:0002100!9.76e-08!216;UBERON:0000353!1.33e-07!17;UBERON:0005153!3.12e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;3.90e-23;15!UBERON:0004819;3.90e-23;15!UBERON:0001285;3.90e-23;15!UBERON:0007684;3.90e-23;15!UBERON:0004211;1.46e-21;10!UBERON:0009773;1.46e-21;10!UBERON:0001231;1.46e-21;10!UBERON:0004810;1.46e-21;10!UBERON:0002113;1.02e-20;24!UBERON:0011143;1.02e-20;24!UBERON:0000489;9.31e-17;29!UBERON:0006554;4.00e-16;30!UBERON:0001008;4.00e-16;30!UBERON:0001225;3.26e-13;12!UBERON:0008987;3.26e-13;12!UBERON:0004903;1.49e-10;2!UBERON:0002173;1.49e-10;2!UBERON:0002186;1.49e-10;2!UBERON:0005172;1.81e-10;52!UBERON:0005173;1.81e-10;52!UBERON:0001851;1.91e-10;15!UBERON:0000353;1.91e-10;15!UBERON:0002417;4.92e-08;58!UBERON:0000916;4.92e-08;58!UBERON:0000058;1.15e-07;10!UBERON:0004821;2.67e-07;3!UBERON:0007499;2.67e-07;3!UBERON:0003215;2.67e-07;3!UBERON:0010368;2.67e-07;3!UBERON:0009911;2.67e-07;3!UBERON:0002299;2.67e-07;3!UBERON:0006524;2.67e-07;3!UBERON:0008874;2.67e-07;3!UBERON:0002169;2.67e-07;3!UBERON:0004894;2.67e-07;3!UBERON:0006853;3.32e-07;3!UBERON:0007685;3.32e-07;3!UBERON:0004134;3.32e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,5.68e-23,15;UBERON:0009773,5.68e-23,15;UBERON:0001231,5.68e-23,15;UBERON:0001285,5.68e-23,15;UBERON:0007684,5.68e-23,15;UBERON:0004208,5.68e-23,15;UBERON:0006555,1.95e-21,16;UBERON:0004819,1.95e-21,16;UBERON:0004810,2.42e-21,10;UBERON:0002113,7.14e-19,26;UBERON:0003918,7.14e-19,26;UBERON:0011143,7.14e-19,26;UBERON:0005095,7.14e-19,26;UBERON:0007687,7.14e-19,26;UBERON:0006554,8.32e-16,47;UBERON:0005172,1.66e-15,54;UBERON:0005173,1.66e-15,54;UBERON:0000489,1.81e-15,31;UBERON:0001008,2.06e-15,48;UBERON:0002417,1.27e-13,60;UBERON:0000916,1.27e-13,60;UBERON:0001225,4.35e-13,12;UBERON:0008987,4.35e-13,12;UBERON:0005177,8.34e-12,101;UBERON:0009569,1.60e-11,112;UBERON:0000058,4.31e-11,19;UBERON:0004903,1.76e-10,2;UBERON:0002173,1.76e-10,2;UBERON:0002186,1.76e-10,2;UBERON:0001851,2.40e-10,15;UBERON:0000353,2.40e-10,15;UBERON:0005911,3.02e-09,82;UBERON:0007499,3.36e-08,25;UBERON:0003929,4.08e-08,54;UBERON:0009856,7.58e-08,26;UBERON:0002100,1.24e-07,199;UBERON:0003914,1.98e-07,117;UBERON:0004821,2.98e-07,3;UBERON:0003215,2.98e-07,3;UBERON:0010368,2.98e-07,3;UBERON:0009911,2.98e-07,3;UBERON:0002299,2.98e-07,3;UBERON:0006524,2.98e-07,3;UBERON:0008874,2.98e-07,3;UBERON:0002169,2.98e-07,3;UBERON:0004894,2.98e-07,3;UBERON:0006853,3.37e-07,3;UBERON:0007685,3.37e-07,3;UBERON:0004134,3.37e-07,3;UBERON:0003104,8.39e-07,160;UBERON:0009142,8.39e-07,160 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0,0.872338524100369,0,0,0,0.737201809504527,4.88460817580699,0.655324116390517,0,0,0,0,0,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.72038491523742,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0.275118041940067,0.208994966536811,0,0.71153252537342,0.66944122552934,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0.103325781175765,0,0,1.82032272387605,0.718618141816238,0,0,0.277064115484183,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0,0.738155454624648,0,0,0,0,0,0,0,4.05861847192275,0.514703430895577,0,0,0.100528972411631,0,0,0,0,0,0,0.288732895522148,0,0,0,1.71697232418975,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.07333828582095,0,0,0,0,1.04007436911366,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,2.11673205330776,0.248107807818777,0.153461973288062,0,0.128139149255701,0,0,0,0,0,0,0,0,5.68039413080624,0,0.552485933615378,0,0,0,0.451199612907412,1.07821471946181,3.13739907670742,2.92278449306521,1.37217117560738,0,0,0.215915916102139,1.54227252690289,0.541892875087706,2.00675909541941,2.29388645740534,3.3243040357149,0.671624264166535,0.219259876645935,0,0.256450125116389,0.328014645699706,0.325378394664303,0.103041011647722,0,0,0,0,0,0,0,0,0.137836572484531,0,0.145016693914229,0.0852266274161009,0,0.165284915360978,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0.511795582622668,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,1.52234282769651,0.764637207142375,0.569647187174163,0,0,0.648473311192717,0,0.79312517629427,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,0,0,0,5.96685908293468,0,0,0,0,0,0,0,0,0,0,0,0.20453736500431,0,0,6.0211795268709,1.79021174675609,0,0,0,1.11136990144637,0,0,0,0.260427761085233,0.0874599999961957,0,0,2.03402920234213,0,0,0,0,0,0,0,0,0,0,0,0.557694977114413,0.0769502585037971,0,0.23056390438806,0.269272933229316,0.869178975376065,0,0.274792780205587,0,0,0,0,0,0,0,0,0,1.68798451622422,1.46909527343233,3.25112064298064,0,0,0,0,0.296521128680622,0.123563938946503,0,0,0,0,0,0.391329237864179,0,0,0,0,0,0,0,0.664653872707185,0,0.313932918407225,0,1.13843818411917,0,0.173559738335131,0.0979923974143777,0.435296032902013,0,0,0,0.146178634172371,0.0821154570532092,0,0,0,0,0,0,0,0.160317640503067,2.56143593687223,0,0,0,0,0.720273989940749,0.372757606696298,0,0.271808412147228,0.313808538937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.59984501613838,1.7307330260045,2.15691340333392,0.0984274815147488,0,0,0.272406812223151,0,0,0,0,0,0.0607495566580247,0,1.65491985328316,0.262272940674991,0.316801009558219,0,0.575745591958336,0,0,0,0,0,0,0,0.082092520749339,0.170388021785422,0,0,0,0,0.13223260174269,1.71086837884329,0,0,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,2.51286554000375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0.686520205190771,0,0,0,0.159296767163702,0,0,0.414706207840855,0,0.521745061811734,0.150257608997218,0.380805212168795,0.406870733204662,0,0,0,0,0,0,0,1.26184898228651,0,0.428883182749851,0,0,0.231522474323834,0.244736704506468,0,0.308801447160972,0,0.883445729729405,0,0,1.53744911152768,0,0,0,0,0,0,0,0,4.22624246717254,0.19998739585493,0,0,0,0,0.279759015438889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205116364240755,0,0,0,0,0.196295437002051,0.11796972334774,0,0.115525666150338,0,0,0,0,0,0,0.261906694481422,1.14640342257068,0.739280431085226,0,0,0,0.0634158101939068,0,0,0,0,0.255524855279191,0,0,0,0,0.177404740325278,0,0,0,0,0.472775363535873,1.66847102838104,0,0,0.840816489941367,0,2.59113109462346,0.47775168788705,0.0714765441766563,0,0,0,0,0,0,0,0,0.118332000730565,0.0852134047591577,0,1.3746412112643,0,1.91107787795487,1.67783147696688,4.51491074630118,7.31507549893617,0,0,0,0,0,0,0,0.22589216407792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,3.52894871715692,2.32699963398588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0,0,0,0,0,0,0.0645889098360061,0,0.448527450322454,0.0636471582781649,0,0,0,0,0.358611026963382,0,0.325613074443898,0.106727345877715,0,0.988077223172456,0,0.122241444182866,0,0,0,0 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| ||
|short_description=p@chr20:30307655..30307679,- | |||
}} | }} |
Latest revision as of 12:50, 28 July 2015
Short description: | p@chr20:30307655..30307679, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:30307655..30307679, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 6.68e-25 | 17 |
kidney epithelial cell | 6.68e-25 | 17 |
epithelial cell of nephron | 5.68e-23 | 15 |
kidney tubule cell | 2.42e-21 | 10 |
nephron tubule epithelial cell | 2.42e-21 | 10 |
epithelial cell | 8.01e-17 | 253 |
kidney cortical cell | 4.35e-13 | 12 |
renal cortical epithelial cell | 4.35e-13 | 12 |
endodermal cell | 6.41e-09 | 58 |
endo-epithelial cell | 2.44e-07 | 42 |
pneumocyte | 2.98e-07 | 3 |
brush border epithelial cell | 3.37e-07 | 3 |
kidney cortex tubule cell | 3.37e-07 | 3 |
epithelial cell of proximal tubule | 3.37e-07 | 3 |
epithelial cell of uterus | 5.19e-07 | 6 |
stromal cell of endometrium | 5.19e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 2.50e-23 | 25 |
carcinoma | 5.26e-19 | 106 |
cell type cancer | 6.14e-14 | 143 |
signet ring cell adenocarcinoma | 7.53e-11 | 2 |
lung adenocarcinoma | 1.76e-10 | 2 |
clear cell adenocarcinoma | 1.19e-09 | 2 |
disease of anatomical entity | 7.78e-08 | 39 |
cancer | 5.05e-07 | 235 |
female reproductive endometrioid cancer | 5.19e-07 | 6 |
respiratory system cancer | 5.22e-07 | 16 |
disease of cellular proliferation | 9.20e-07 | 239 |