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{{f5samples
{{f5samples
|id=FF:11292-117A5
|DRA_sample_Accession=CAGE@SAMD00005201
|name=Tracheal Epithelial Cells, donor1
|accession_numbers=CAGE;DRX008522;DRR009394;DRZ000819;DRZ002204;DRZ012169;DRZ013554
|sample_id=11292
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003126,UBERON:0002100,UBERON:0000064,UBERON:0004119,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0005178,UBERON:0000072,UBERON:0005177,UBERON:0000464,UBERON:0001005,UBERON:0005181,UBERON:0010317,UBERON:0007196,UBERON:0000065,UBERON:0001558,UBERON:0001004,UBERON:0002224,UBERON:0000915
|rna_tube_id=117A5
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0002202,CL:0000255,CL:0002076,CL:0002632,CL:0002368,CL:0000307
|rna_box=117
|rna_position=A5
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Cell Applications
|rna_lot_number=1875
|rna_catalog_number=CA504-R10a
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=50 years old adult
|sample_tissue=trachea
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=50
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=tracheal epithelial cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs11092,LSID724,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10009,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000068,CL:0000069,CL:0000144,CL:0000220,CL:0000223,CL:0000255,CL:0000307,CL:0000377,CL:0000548,CL:0002076,CL:0002202,CL:0002321,CL:0002368,CL:0002371,CL:0002632
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000915,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001004,UBERON:0001005,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001558,UBERON:0002050,UBERON:0002224,UBERON:0002532,UBERON:0003104,UBERON:0003126,UBERON:0003258,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005423,UBERON:0007026,UBERON:0007196,UBERON:0008947,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000189
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.23!170.60!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.15!140.10!TP63;;chr1:209979467..209979494,-!p1@IRF6!2.04!121.72!IRF6;;chr11:34642612..34642646,+!p1@EHF!2.03!106.61!EHF;;chr1:209979411..209979433,-!p2@IRF6!1.82!64.47!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.80!62.16!ZBED2;;chr6:34524093..34524135,-!p1@SPDEF!1.67!45.51!SPDEF;;chr6:10415276..10415341,-!p2@TFAP2A!1.66!53.60!TFAP2A;;chr15:83953397..83953425,-!p1@BNC1!1.62!46.38!BNC1;;chr1:6479968..6479986,-!p1@HES2!1.56!34.93!HES2;;chr12:54785074..54785122,-!p2@ZNF385A!1.54!51.58!ZNF385A;;chr6:10412600..10412637,-!p1@TFAP2A!1.52!52.63!TFAP2A;;chr6:34524049..34524089,-!p2@SPDEF!1.49!29.64!SPDEF;;chr5:134369905..134369972,-!p1@PITX1!1.47!43.49!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.46!57.35!SOX15;;chr8:10588010..10588030,-!p1@SOX7!1.44!26.46!SOX7;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!26.17!ZBED1;;chr6:34524025..34524045,-!p3@SPDEF!1.43!25.88!SPDEF;;chr12:54785054..54785072,-!p4@ZNF385A!1.42!28.48!ZNF385A;;chr12:66218255..66218304,+!p3@HMGA2!1.38!60.43!HMGA2;;chr13:73633131..73633149,+!p1@KLF5!1.31!202.64!KLF5;;chr22:19748231..19748317,+!p1@TBX1!1.28!18.19!TBX1;;chr5:134369879..134369898,-!p2@PITX1!1.28!17.90!PITX1;;chr17:80797886..80797906,-!p1@ZNF750!1.24!16.36!ZNF750;;chr3:111314230..111314241,-!p2@ZBED2!1.21!15.30!ZBED2;;chr2:46524897..46524911,+!p2@EPAS1!1.20!41.09!EPAS1;;chr12:66218598..66218645,+!p2@HMGA2!1.17!62.93!HMGA2;;chr20:22565185..22565223,-!p3@FOXA2!1.17!13.95!FOXA2;;chr14:37131058..37131139,+!p1@PAX9!1.17!13.66!PAX9;;chr8:102504651..102504683,+!p1@GRHL2!1.15!13.28!GRHL2;;chr12:27485762..27485776,+!p3@ARNTL2!1.12!32.81!ARNTL2;;chr5:2751762..2751784,-!p1@IRX2!1.12!12.22!IRX2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.10!103.34!PPP1R13L;;chr1:24645832..24645853,+!p1@GRHL3!1.04!10.01!GRHL3;;chr11:34642656..34642667,+!p2@EHF!1.02!9.53!EHF;;chr6:10415484..10415508,-!p3@TFAP2A!1.01!9.24!TFAP2A;;chr6:10412576..10412599,-!p5@TFAP2A!1.00!9.04!TFAP2A;;chr17:8027418..8027432,-!p1@HES7!0.97!8.28!HES7;;chr14:38064429..38064486,-!p1@FOXA1!0.95!7.89!FOXA1;;chr11:34645791..34645836,+!p3@EHF!0.94!7.70!EHF;;chr17:46132044..46132080,+!p4@NFE2L1!0.94!7.70!NFE2L1;;chr11:65667884..65667895,-!p2@FOSL1!0.90!28.19!FOSL1;;chr8:49833948..49833973,-!p2@SNAI2!0.89!44.94!SNAI2;;chr12:66218212..66218244,+!p5@HMGA2!0.89!10.10!HMGA2;;chr20:22564895..22564910,-!p1@FOXA2!0.89!6.83!FOXA2;;chr11:65667846..65667868,-!p1@FOSL1!0.88!182.34!FOSL1;;chr6:10413188..10413249,-!p7@TFAP2A!0.88!6.54!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!0.87!63.41!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!0.85!10.87!DRAP1;;chr2:239756671..239756732,+!p1@TWIST2!0.84!20.11!TWIST2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.84!5.97!TFCP2L1;;chr2:63277948..63277974,+!p1@OTX1!0.84!5.97!OTX1;;chr15:83953373..83953386,-!p2@BNC1!0.83!5.77!BNC1;;chr19:42636586..42636607,-!p1@POU2F2!0.81!15.88!POU2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.81!11.07!HMGA2;;chr1:209979449..209979460,-!p3@IRF6!0.81!5.48!IRF6;;chr20:22565370..22565388,-!p2@FOXA2!0.79!5.20!FOXA2;;chr1:24645921..24645973,+!p2@GRHL3!0.79!5.10!GRHL3;;chr8:128748308..128748324,+!p2@MYC!0.78!151.93!MYC;;chr1:158979792..158979814,+!p2@IFI16!0.78!52.83!IFI16;;chr6:34204672..34204692,+!p1@HMGA1!0.77!606.58!HMGA1;;chr12:66218003..66218018,+!p9@HMGA2!0.77!6.06!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!0.76!8.18!FOXQ1;;chr12:66218378..66218401,+!p6@HMGA2!0.76!7.79!HMGA2;;chr3:189507460..189507471,+!p3@TP63!0.76!4.81!TP63;;chr6:106546808..106546833,+!p3@PRDM1!0.75!5.97!PRDM1;;chr8:49833978..49833996,-!p1@SNAI2!0.74!104.02!SNAI2;;chr12:27485785..27485816,+!p1@ARNTL2!0.74!34.93!ARNTL2;;chr4:57547454..57547469,-!p1@HOPX!0.74!4.52!HOPX;;chr14:90085820..90085840,-!p6@FOXN3!0.74!4.52!FOXN3;;chr2:208030647..208030689,-!p1@KLF7!0.73!40.80!KLF7;;chr2:113994526..113994556,-!p3@PAX8!0.72!4.23!PAX8;;chr20:18038521..18038571,-!p1@OVOL2!0.72!4.23!OVOL2;;chr15:101069113..101069169,-!p1@CERS3!0.72!4.23!CERS3;;chr1:37940170..37940190,+!p1@ZC3H12A!0.71!58.21!ZC3H12A;;chr2:70142232..70142251,+!p1@MXD1!0.71!26.08!MXD1;;chr17:41623009..41623053,-!p4@ETV4!0.71!7.02!ETV4;;chr20:55204351..55204377,+!p1@TFAP2C!0.71!5.39!TFAP2C;;chr2:45236540..45236577,-!p1@SIX2!0.71!4.14!SIX2;;chr17:41623692..41623715,-!p1@ETV4!0.70!19.24!ETV4;;chr12:27485823..27485868,+!p2@ARNTL2!0.70!17.99!ARNTL2;;chr11:129245526..129245553,+!p1@BARX2!0.70!4.04!BARX2;;chr11:128392273..128392308,-!p2@ETS1!0.69!18.57!ETS1;;chr9:100615499..100615519,+!p1@FOXE1!0.69!3.95!FOXE1;;chr6:21597765..21597779,+!p2@SOX4!0.67!34.35!SOX4;;chr2:46612334..46612349,+!p6@EPAS1!0.67!5.10!EPAS1;;chr4:57522598..57522664,-!p3@HOPX!0.67!3.66!HOPX;;chr3:141121847..141121868,+!p5@ZBTB38!0.65!5.68!ZBTB38;;chr14:21566731..21566836,-!p1@ZNF219!0.64!42.53!ZNF219;;chr2:46524878..46524891,+!p3@EPAS1!0.64!6.35!EPAS1;;chr14:37051798..37051831,-!p1@NKX2-8!0.64!3.37!NKX2-8;;chr17:46131916..46131952,+!p7@NFE2L1!0.64!3.37!NFE2L1;;chr12:77459306..77459365,-!p1@E2F7!0.63!48.88!E2F7;;chr16:54964740..54964789,+!p1@IRX5!0.63!5.00!IRX5;;chr12:66218443..66218461,+!p8@HMGA2!0.63!4.43!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!0.61!5.20!ZFP64;;chr20:6748325..6748352,+!p1@BMP2!0.61!4.71!BMP2;;chr11:120107344..120107351,+!p1@POU2F3!0.61!3.85!POU2F3;;chr3:189507523..189507535,+!p5@TP63!0.61!3.08!TP63;;chr5:2751785..2751808,-!p2@IRX2!0.61!3.08!IRX2;;chr6:10415263..10415274,-!p8@TFAP2A!0.61!3.08!TFAP2A;;chr6:10419768..10419819,-!p6@TFAP2A!0.61!3.08!TFAP2A;;chr1:24646263..24646277,+!p4@GRHL3!0.61!3.08!GRHL3;;chr11:47236584..47236679,+!p1@DDB2!0.60!39.35!DDB2;;chr13:41593425..41593480,-!p1@ELF1!0.60!22.71!ELF1;;chr6:126102292..126102329,+!p3@NCOA7!0.60!11.45!NCOA7;;chr5:50679228..50679288,+!p1@ISL1!0.60!2.98!ISL1;;chr1:209979375..209979386,-!p4@IRF6!0.60!2.98!IRF6;;chr5:137804484..137804498,+!p2@EGR1!0.59!13.86!EGR1;;chr12:48298765..48298783,-!p2@VDR!0.59!6.74!VDR;;chr2:10091815..10091864,+!p1@GRHL1!0.59!4.04!GRHL1;;chr11:65554528..65554546,+!p1@OVOL1!0.59!2.89!OVOL1;;chr11:65687362..65687436,+!p3@DRAP1!0.58!15.49!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.58!4.62!ETV4;;chr12:53625966..53626012,-!p2@RARG!0.57!8.47!RARG;;chr2:239756739..239756755,+!p2@TWIST2!0.57!5.20!TWIST2;;chr2:60778035..60778060,-!p4@BCL11A!0.57!3.37!BCL11A;;chr1:10856694..10856715,-!p3@CASZ1!0.57!2.69!CASZ1;;chr12:48298785..48298828,-!p1@VDR!0.56!17.03!VDR;;chr14:61116183..61116208,-!p1@SIX1!0.56!12.12!SIX1;;chr12:66218573..66218596,+!p7@HMGA2!0.56!4.23!HMGA2;;chr15:83953694..83953708,-!p4@BNC1!0.56!2.60!BNC1;;chr11:65686732..65686756,+!p2@DRAP1!0.55!13.09!DRAP1;;chr6:10412392..10412409,-!p4@TFAP2A!0.54!2.89!TFAP2A;;chr2:63277978..63277995,+!p2@OTX1!0.54!2.50!OTX1;;chr1:8938709..8938720,-!p3@ENO1!0.53!150.97!ENO1;;chr5:72744594..72744609,-!p1@FOXD1!0.53!13.57!FOXD1;;chr8:128748470..128748487,+!p1@MYC!0.52!333.51!MYC;;chr8:102504979..102505010,+!p2@GRHL2!0.52!2.31!GRHL2;;chr22:24093154..24093183,-!p2@ZNF70!0.52!2.31!ZNF70;;chr6:34204642..34204664,+!p2@HMGA1!0.51!397.88!HMGA1;;chr6:106546786..106546802,+!p6@PRDM1!0.51!2.21!PRDM1;;chr1:50889155..50889173,-!p2@DMRTA2!0.51!2.21!DMRTA2;;chr12:66218420..66218439,+!p12@HMGA2!0.51!2.21!HMGA2;;chr1:8938766..8938774,-!p2@ENO1!0.50!200.24!ENO1;;chr19:45579725..45579743,-!p1@ZNF296!0.50!12.41!ZNF296;;chr12:80084737..80084763,-!p3@PAWR!0.50!10.10!PAWR;;chr2:70167296..70167306,+!p3@MXD1!0.50!3.75!MXD1;;chr8:128747661..128747703,+!p6@MYC!0.50!3.18!MYC;;chr12:27485889..27485900,+!p4@ARNTL2!0.50!2.79!ARNTL2;;chr17:41623075..41623101,-!p9@ETV4!0.50!2.69!ETV4;;chr17:41623259..41623278,-!p7@ETV4!0.50!2.69!ETV4;;chr8:10697329..10697365,-!p2@PINX1,p2@SOX7!0.49!17.90!SOX7;;chr2:169312600..169312606,+!p2@CERS6!0.49!3.75!CERS6;;chr13:73636252..73636307,+!p2@KLF5!0.49!2.60!KLF5;;chr12:66218904..66218913,+!p11@HMGA2!0.49!2.12!HMGA2;;chr22:19746969..19746987,+!p2@TBX1!0.49!2.12!TBX1;;chr5:134369973..134369984,-!p3@PITX1!0.49!2.12!PITX1;;chr20:50722202..50722217,-!p7@ZFP64!0.49!2.12!ZFP64;;chr9:22447422..22447483,+!p1@DMRTA1!0.49!2.12!DMRTA1;;chr1:154975258..154975330,+!p1@ZBTB7B!0.48!9.72!ZBTB7B;;chr16:2059754..2059777,-!p2@ZNF598!0.48!8.95!ZNF598;;chr1:10754477..10754517,-!p1@CASZ1!0.48!3.85!CASZ1;;chr12:66218152..66218174,+!p10@HMGA2!0.48!2.21!HMGA2;;chr4:299227..299272,-!p1@ZNF732!0.48!2.02!ZNF732;;chr3:32023232..32023273,+!p1@ZNF860!0.47!3.08!ZNF860;;chr4:57522166..57522260,-!p2@HOPX!0.47!2.41!HOPX;;chr12:66218469..66218477,+!p16@HMGA2!0.47!1.92!HMGA2;;chr1:37945588..37945604,+!p3@ZC3H12A!0.47!1.92!ZC3H12A;;chr9:2158443..2158481,+!p2@SMARCA2!0.46!6.74!SMARCA2;;chr11:65686952..65686975,+!p5@DRAP1!0.45!13.47!DRAP1;;chr17:41622834..41622883,-!p6@ETV4!0.45!2.41!ETV4;;chr20:48807548..48807572,+!p14@CEBPB!0.45!2.41!CEBPB;;chr1:10856639..10856662,-!p2@CASZ1!0.45!1.83!CASZ1;;chr20:55205825..55205847,+!p2@TFAP2C!0.45!1.83!TFAP2C;;chr2:45236579..45236596,-!p2@SIX2!0.45!1.83!SIX2;;chr15:83953474..83953483,-!p3@BNC1!0.45!1.83!BNC1;;chr17:80797863..80797874,-!p2@ZNF750!0.45!1.83!ZNF750;;chr8:48650715..48650735,-!p1@CEBPD!0.44!323.69!CEBPD;;chr22:29196547..29196563,-!p2@XBP1!0.44!92.76!XBP1;;chr6:34204921..34204939,+!p3@HMGA1!0.44!75.25!HMGA1;;chr5:3595977..3595999,+!p1@IRX1!0.44!1.73!IRX1;;chr8:102504690..102504704,+!p3@GRHL2!0.44!1.73!GRHL2;;chr1:10856665..10856683,-!p4@CASZ1!0.44!1.73!CASZ1;;chr1:50889103..50889145,-!p1@DMRTA2!0.44!1.73!DMRTA2;;chr3:138665969..138665993,-!p2@FOXL2!0.44!1.73!FOXL2;;chr18:3450161..3450183,+!p1@TGIF1!0.43!83.81!TGIF1;;chr11:65687158..65687216,+!p4@DRAP1!0.43!13.47!DRAP1;;chr2:60780753..60780800,-!p1@BCL11A!0.43!11.45!BCL11A;;chr7:148892653..148892729,+!p1@ZNF282!0.42!34.64!ZNF282;;chr17:38256799..38256815,-!p3@NR1D1!0.42!3.56!NR1D1;;chr16:30102849..30102865,-!p2@TBX6!0.42!1.64!TBX6;;chr17:7492979..7492991,-!p5@SOX15!0.42!1.64!SOX15;;chr5:3595934..3595957,+!p2@IRX1!0.42!1.64!IRX1;;chr6:106546731..106546755,+!p5@PRDM1!0.42!1.64!PRDM1;;chr6:41701581..41701613,-!p2@TFEB!0.42!1.64!TFEB;;chr7:97840743..97840786,+!p1@BHLHA15!0.42!1.64!BHLHA15;;chr19:42636625..42636632,-!p2@POU2F2!0.42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Line 66: Line 41:
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11292
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11292
|name=Tracheal Epithelial Cells, donor1
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|rna_box=117
|rna_catalog_number=CA504-R10a
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=1875
|rna_od260/230=
|rna_od260/280=
|rna_position=A5
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117A5
|rna_weight_ug=10
|sample_age=50
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=tracheal epithelial cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Cell Applications
|sample_description=
|sample_dev_stage=50 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.04103539739054e-256!GO:0005737;cytoplasm;3.24792605903393e-205!GO:0043226;organelle;4.12891673311835e-198!GO:0043229;intracellular organelle;1.59743401729626e-197!GO:0043231;intracellular membrane-bound organelle;4.674887994471e-186!GO:0043227;membrane-bound organelle;8.44636359944671e-186!GO:0044422;organelle part;2.14693523547927e-148!GO:0044446;intracellular organelle part;6.5804970871823e-147!GO:0044444;cytoplasmic part;1.54361300121947e-134!GO:0032991;macromolecular complex;1.10857505260389e-100!GO:0044238;primary metabolic process;2.21201934522415e-91!GO:0044237;cellular metabolic process;3.17385733078853e-91!GO:0030529;ribonucleoprotein complex;8.39578566467357e-91!GO:0043170;macromolecule metabolic process;4.44768069454653e-81!GO:0005515;protein binding;9.21665660203917e-77!GO:0043233;organelle lumen;7.94444028326118e-76!GO:0031974;membrane-enclosed lumen;7.94444028326118e-76!GO:0005739;mitochondrion;5.20495085298707e-73!GO:0044428;nuclear part;1.92460377014813e-72!GO:0005634;nucleus;5.64521496545439e-72!GO:0003723;RNA binding;2.20127772029225e-66!GO:0005840;ribosome;6.6086979895536e-58!GO:0006412;translation;4.91519743010627e-57!GO:0019538;protein metabolic process;2.8538735112114e-55!GO:0009058;biosynthetic process;1.21010056162532e-51!GO:0031090;organelle membrane;4.00820741508183e-51!GO:0003735;structural constituent of ribosome;8.67670841944662e-51!GO:0043234;protein complex;9.66821658856329e-50!GO:0044249;cellular biosynthetic process;1.17494985509592e-48!GO:0006396;RNA processing;1.19813068429435e-48!GO:0016043;cellular component organization and biogenesis;1.67405773395734e-48!GO:0044429;mitochondrial part;3.17960940560572e-48!GO:0044267;cellular protein metabolic process;4.1516706090389e-48!GO:0044260;cellular macromolecule metabolic process;1.4283790194873e-47!GO:0015031;protein transport;3.56355205796292e-46!GO:0033036;macromolecule localization;1.57665831934737e-45!GO:0031981;nuclear lumen;5.88076747743009e-45!GO:0009059;macromolecule biosynthetic process;1.61606865128851e-44!GO:0005829;cytosol;2.51608738410452e-43!GO:0043283;biopolymer metabolic process;2.58525304733725e-43!GO:0033279;ribosomal subunit;6.57985687193935e-43!GO:0045184;establishment of protein localization;1.6647762757142e-42!GO:0008104;protein localization;2.08627902255376e-42!GO:0031967;organelle envelope;3.15754501013004e-42!GO:0031975;envelope;6.29035774732148e-42!GO:0043228;non-membrane-bound organelle;8.1600098758129e-42!GO:0043232;intracellular non-membrane-bound organelle;8.1600098758129e-42!GO:0010467;gene expression;9.78891556755514e-40!GO:0065003;macromolecular complex assembly;2.49661300999543e-37!GO:0046907;intracellular transport;2.8425871079264e-36!GO:0016071;mRNA metabolic process;2.35021542436135e-35!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.10185326197113e-35!GO:0008380;RNA splicing;1.83502074388539e-33!GO:0006996;organelle organization and biogenesis;3.26127989386066e-33!GO:0006886;intracellular protein transport;9.61063128766611e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.11047874856425e-32!GO:0022607;cellular component assembly;2.65151664480499e-32!GO:0006397;mRNA processing;4.60977371865371e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.26049943060974e-30!GO:0005740;mitochondrial envelope;2.58045229215979e-30!GO:0031966;mitochondrial membrane;5.0382888486662e-28!GO:0019866;organelle inner membrane;8.07186684802661e-27!GO:0005654;nucleoplasm;1.59336485193419e-26!GO:0006259;DNA metabolic process;4.517997763251e-26!GO:0005681;spliceosome;1.17298145102538e-25!GO:0005743;mitochondrial inner membrane;2.58100930641795e-25!GO:0044445;cytosolic part;1.84288466973387e-24!GO:0051649;establishment of cellular localization;6.85083717932156e-24!GO:0051641;cellular localization;1.00864169315258e-23!GO:0015934;large ribosomal subunit;2.07775247016663e-22!GO:0031980;mitochondrial lumen;5.43175283795771e-22!GO:0005759;mitochondrial matrix;5.43175283795771e-22!GO:0015935;small ribosomal subunit;1.82720184465051e-21!GO:0012505;endomembrane system;2.99329714647984e-21!GO:0007049;cell cycle;3.2241277822915e-21!GO:0044451;nucleoplasm part;3.5799076310097e-21!GO:0016874;ligase activity;4.2529860678694e-21!GO:0044455;mitochondrial membrane part;5.32355723784984e-21!GO:0006119;oxidative phosphorylation;5.33747436772441e-21!GO:0000166;nucleotide binding;6.0866488054556e-21!GO:0006457;protein folding;9.35256319483141e-21!GO:0005730;nucleolus;1.32198195701878e-20!GO:0016462;pyrophosphatase activity;4.0742451688898e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.07264449674913e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;6.99496892575353e-19!GO:0005783;endoplasmic reticulum;2.03987150624247e-18!GO:0048770;pigment granule;3.28224419352562e-18!GO:0042470;melanosome;3.28224419352562e-18!GO:0022618;protein-RNA complex assembly;4.7317667009903e-18!GO:0017111;nucleoside-triphosphatase activity;6.51307241926461e-18!GO:0003676;nucleic acid binding;1.22890283116089e-17!GO:0006605;protein targeting;3.50545016076764e-17!GO:0005761;mitochondrial ribosome;4.86123338207635e-17!GO:0000313;organellar ribosome;4.86123338207635e-17!GO:0051186;cofactor metabolic process;5.25297794676455e-17!GO:0006512;ubiquitin cycle;7.04976580784776e-17!GO:0043285;biopolymer catabolic process;1.56490889104737e-16!GO:0044265;cellular macromolecule catabolic process;2.25261407465784e-16!GO:0044432;endoplasmic reticulum part;5.94806518233538e-16!GO:0005746;mitochondrial respiratory chain;6.11812078795904e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;6.84253265637217e-16!GO:0008134;transcription factor binding;7.92245794497226e-16!GO:0000502;proteasome complex (sensu Eukaryota);9.00126000566771e-16!GO:0019941;modification-dependent protein catabolic process;9.82125421246521e-16!GO:0043632;modification-dependent macromolecule catabolic process;9.82125421246521e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.0451713006213e-15!GO:0022402;cell cycle process;1.04576515500935e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.0511114226421e-15!GO:0009057;macromolecule catabolic process;1.40472487385479e-15!GO:0016070;RNA metabolic process;1.47343083995635e-15!GO:0044257;cellular protein catabolic process;1.84440929929415e-15!GO:0042254;ribosome biogenesis and assembly;2.05588186822663e-15!GO:0044248;cellular catabolic process;4.09897951343351e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.2162667157551e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.50547604554235e-15!GO:0043412;biopolymer modification;7.19722478711269e-15!GO:0000278;mitotic cell cycle;9.78264400435701e-15!GO:0017076;purine nucleotide binding;9.8738123117178e-15!GO:0032553;ribonucleotide binding;1.06908539665916e-14!GO:0032555;purine ribonucleotide binding;1.06908539665916e-14!GO:0030163;protein catabolic process;1.07029095257511e-14!GO:0005794;Golgi apparatus;1.48242367175363e-14!GO:0012501;programmed cell death;1.48242367175363e-14!GO:0006732;coenzyme metabolic process;1.94384960130559e-14!GO:0008135;translation factor activity, nucleic acid binding;2.24461925523107e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.46902875116824e-14!GO:0003954;NADH dehydrogenase activity;2.46902875116824e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.46902875116824e-14!GO:0006915;apoptosis;2.99394967153165e-14!GO:0006974;response to DNA damage stimulus;1.06157694603747e-13!GO:0051082;unfolded protein binding;1.11120414519203e-13!GO:0006461;protein complex assembly;2.10332195334736e-13!GO:0006464;protein modification process;2.16111177189491e-13!GO:0048193;Golgi vesicle transport;3.93501226937971e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;7.42842920729673e-13!GO:0000375;RNA splicing, via transesterification reactions;7.42842920729673e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.42842920729673e-13!GO:0008219;cell death;8.44647028307765e-13!GO:0016265;death;8.44647028307765e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.66431629420975e-13!GO:0009055;electron carrier activity;8.80562718267712e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.2057832589282e-12!GO:0042773;ATP synthesis coupled electron transport;1.2057832589282e-12!GO:0005635;nuclear envelope;1.68643424792064e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.90663290618111e-12!GO:0045271;respiratory chain complex I;1.90663290618111e-12!GO:0005747;mitochondrial respiratory chain complex I;1.90663290618111e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.93998493440107e-12!GO:0006399;tRNA metabolic process;3.63709694643863e-12!GO:0005789;endoplasmic reticulum membrane;4.54256133801913e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.9340221673367e-12!GO:0016192;vesicle-mediated transport;6.39954368009659e-12!GO:0005524;ATP binding;9.62091889367915e-12!GO:0006913;nucleocytoplasmic transport;1.0475095516739e-11!GO:0008565;protein transporter activity;1.44649471594214e-11!GO:0043687;post-translational protein modification;1.59910691113035e-11!GO:0005694;chromosome;1.62302170434361e-11!GO:0032559;adenyl ribonucleotide binding;1.62962379872719e-11!GO:0006413;translational initiation;1.8049064525356e-11!GO:0030554;adenyl nucleotide binding;1.9902745679522e-11!GO:0003743;translation initiation factor activity;2.07793182055464e-11!GO:0051169;nuclear transport;2.36359538560288e-11!GO:0031965;nuclear membrane;2.39639608352197e-11!GO:0000087;M phase of mitotic cell cycle;3.20917522839605e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.97391508240872e-11!GO:0007067;mitosis;5.09724598865154e-11!GO:0051276;chromosome organization and biogenesis;6.53916507925527e-11!GO:0006446;regulation of translational initiation;6.86888041786872e-11!GO:0000074;regulation of progression through cell cycle;7.37673651856038e-11!GO:0006281;DNA repair;7.80896772640815e-11!GO:0044453;nuclear membrane part;7.81500285674295e-11!GO:0051726;regulation of cell cycle;1.00736991328455e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;1.62839990265063e-10!GO:0016604;nuclear body;1.75633015150441e-10!GO:0044427;chromosomal part;2.43983305703855e-10!GO:0009056;catabolic process;2.46639061330674e-10!GO:0003712;transcription cofactor activity;2.81583630612709e-10!GO:0006364;rRNA processing;3.6587393974605e-10!GO:0043067;regulation of programmed cell death;3.92551037140618e-10!GO:0016072;rRNA metabolic process;4.31329094228136e-10!GO:0042981;regulation of apoptosis;4.66660389696329e-10!GO:0008639;small protein conjugating enzyme activity;4.77615045957001e-10!GO:0006323;DNA packaging;5.35905032433649e-10!GO:0009259;ribonucleotide metabolic process;6.38064612508584e-10!GO:0009719;response to endogenous stimulus;6.95698985109524e-10!GO:0006260;DNA replication;7.48213069046695e-10!GO:0017038;protein import;7.50976550461967e-10!GO:0022403;cell cycle phase;8.33204024768509e-10!GO:0005793;ER-Golgi intermediate compartment;8.47809989789061e-10!GO:0051188;cofactor biosynthetic process;9.68248404111572e-10!GO:0004842;ubiquitin-protein ligase activity;1.03243786026201e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.43526671593072e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.43526671593072e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.43526671593072e-09!GO:0019787;small conjugating protein ligase activity;1.52856078484515e-09!GO:0006366;transcription from RNA polymerase II promoter;1.60065597197337e-09!GO:0006163;purine nucleotide metabolic process;1.63231253249766e-09!GO:0043038;amino acid activation;2.58253661908483e-09!GO:0006418;tRNA aminoacylation for protein translation;2.58253661908483e-09!GO:0043039;tRNA aminoacylation;2.58253661908483e-09!GO:0007005;mitochondrion organization and biogenesis;2.64934168094172e-09!GO:0048475;coated membrane;2.90719983821301e-09!GO:0030117;membrane coat;2.90719983821301e-09!GO:0005643;nuclear pore;3.22161652955213e-09!GO:0009150;purine ribonucleotide metabolic process;4.29415865561659e-09!GO:0065002;intracellular protein transport across a membrane;5.49667895824314e-09!GO:0016881;acid-amino acid ligase activity;5.88829900043291e-09!GO:0051246;regulation of protein metabolic process;7.77500849269509e-09!GO:0006164;purine nucleotide biosynthetic process;8.61227053932063e-09!GO:0009260;ribonucleotide biosynthetic process;8.65197423629623e-09!GO:0048523;negative regulation of cellular process;9.52093157894408e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.00581512301179e-08!GO:0042623;ATPase activity, coupled;1.19197242426755e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.48402317852394e-08!GO:0051301;cell division;1.48402317852394e-08!GO:0016887;ATPase activity;1.8304741137489e-08!GO:0009141;nucleoside triphosphate metabolic process;1.83548286535213e-08!GO:0065004;protein-DNA complex assembly;2.10702170636189e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.19854063567022e-08!GO:0030120;vesicle coat;2.39281214546084e-08!GO:0030662;coated vesicle membrane;2.39281214546084e-08!GO:0000785;chromatin;2.51639494306447e-08!GO:0016607;nuclear speck;3.29616350521346e-08!GO:0030532;small nuclear ribonucleoprotein complex;3.64689548717935e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.82402893595052e-08!GO:0005768;endosome;4.25580072787825e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.89193033911783e-08!GO:0016740;transferase activity;5.19177129314286e-08!GO:0009108;coenzyme biosynthetic process;5.6253097434102e-08!GO:0009060;aerobic respiration;5.96111213878163e-08!GO:0000279;M phase;6.02347548830963e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.32267512200161e-08!GO:0003924;GTPase activity;7.11586704104244e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.2821616067088e-08!GO:0016491;oxidoreductase activity;7.38694579906025e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.88144946843933e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.88144946843933e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.71978613374158e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.96822165667894e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.96822165667894e-08!GO:0015986;ATP synthesis coupled proton transport;1.03714141246722e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.03714141246722e-07!GO:0004386;helicase activity;1.03714141246722e-07!GO:0006333;chromatin assembly or disassembly;1.19302213041904e-07!GO:0016779;nucleotidyltransferase activity;1.21923714683609e-07!GO:0050794;regulation of cellular process;1.23312208412597e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.41221018221649e-07!GO:0045333;cellular respiration;1.6335152588333e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.66180369319382e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.66180369319382e-07!GO:0046930;pore complex;1.96755302392542e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.16592074501187e-07!GO:0050657;nucleic acid transport;2.20876154633175e-07!GO:0051236;establishment of RNA localization;2.20876154633175e-07!GO:0050658;RNA transport;2.20876154633175e-07!GO:0043069;negative regulation of programmed cell death;2.27428252728171e-07!GO:0048519;negative regulation of biological process;2.60825233353662e-07!GO:0006403;RNA localization;2.84922211926453e-07!GO:0008026;ATP-dependent helicase activity;3.95892867528038e-07!GO:0043066;negative regulation of apoptosis;5.64156774769899e-07!GO:0051170;nuclear import;6.22426015029917e-07!GO:0032446;protein modification by small protein conjugation;7.02927748042783e-07!GO:0006334;nucleosome assembly;7.31250134417538e-07!GO:0043623;cellular protein complex assembly;7.37251032068882e-07!GO:0006916;anti-apoptosis;8.52713222449293e-07!GO:0016567;protein ubiquitination;8.64666015075828e-07!GO:0019829;cation-transporting ATPase activity;1.11684415888631e-06!GO:0046034;ATP metabolic process;1.14781762876927e-06!GO:0006099;tricarboxylic acid cycle;1.16181380158973e-06!GO:0046356;acetyl-CoA catabolic process;1.16181380158973e-06!GO:0006752;group transfer coenzyme metabolic process;1.33604270171017e-06!GO:0009117;nucleotide metabolic process;1.36937115686712e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.38942992707925e-06!GO:0044431;Golgi apparatus part;1.59379820430496e-06!GO:0006606;protein import into nucleus;1.65794468324883e-06!GO:0006754;ATP biosynthetic process;1.66804810974339e-06!GO:0006753;nucleoside phosphate metabolic process;1.66804810974339e-06!GO:0009109;coenzyme catabolic process;1.9881507332316e-06!GO:0016787;hydrolase activity;1.9881507332316e-06!GO:0031497;chromatin assembly;2.46102380912512e-06!GO:0005762;mitochondrial large ribosomal subunit;2.65872495338034e-06!GO:0000315;organellar large ribosomal subunit;2.65872495338034e-06!GO:0003899;DNA-directed RNA polymerase activity;2.81899660254109e-06!GO:0003697;single-stranded DNA binding;3.45526242417054e-06!GO:0005525;GTP binding;3.52084313842593e-06!GO:0051187;cofactor catabolic process;3.74417180233946e-06!GO:0006084;acetyl-CoA metabolic process;4.04592439276384e-06!GO:0000245;spliceosome assembly;4.8940961952909e-06!GO:0016853;isomerase activity;5.61556274341803e-06!GO:0045454;cell redox homeostasis;5.69210055377889e-06!GO:0045259;proton-transporting ATP synthase complex;6.15741615434384e-06!GO:0043566;structure-specific DNA binding;6.78605370105729e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;6.8310378044541e-06!GO:0005667;transcription factor complex;7.77281144314594e-06!GO:0015078;hydrogen ion transmembrane transporter activity;8.58548478412928e-06!GO:0051028;mRNA transport;8.62391440281058e-06!GO:0004298;threonine endopeptidase activity;9.40263186627943e-06!GO:0048522;positive regulation of cellular process;1.0043463104521e-05!GO:0015630;microtubule cytoskeleton;1.18448065582891e-05!GO:0006793;phosphorus metabolic process;1.22827493540051e-05!GO:0006796;phosphate metabolic process;1.22827493540051e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.46899799533803e-05!GO:0031252;leading edge;1.48502226777781e-05!GO:0006613;cotranslational protein targeting to membrane;1.70031274924255e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.75060735057008e-05!GO:0000314;organellar small ribosomal subunit;1.77831608846675e-05!GO:0005763;mitochondrial small ribosomal subunit;1.77831608846675e-05!GO:0016568;chromatin modification;1.88480664828922e-05!GO:0005770;late endosome;2.23067870978274e-05!GO:0030118;clathrin coat;2.58622041253438e-05!GO:0003724;RNA helicase activity;2.62618830165731e-05!GO:0044440;endosomal part;2.63213377442143e-05!GO:0010008;endosome membrane;2.63213377442143e-05!GO:0003714;transcription corepressor activity;2.73037746715132e-05!GO:0045786;negative regulation of progression through cell cycle;2.89457681842259e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.00003087246647e-05!GO:0000139;Golgi membrane;3.12415195256486e-05!GO:0006091;generation of precursor metabolites and energy;3.14230082358774e-05!GO:0031988;membrane-bound vesicle;3.25604453414923e-05!GO:0051427;hormone receptor binding;3.34220458214278e-05!GO:0003713;transcription coactivator activity;3.65816917031035e-05!GO:0005798;Golgi-associated vesicle;3.81189450702893e-05!GO:0008654;phospholipid biosynthetic process;3.81257899897742e-05!GO:0005788;endoplasmic reticulum lumen;4.12999068503053e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.26880061492909e-05!GO:0016564;transcription repressor activity;4.66339957921213e-05!GO:0016859;cis-trans isomerase activity;4.66339957921213e-05!GO:0032561;guanyl ribonucleotide binding;4.72834145479395e-05!GO:0019001;guanyl nucleotide binding;4.72834145479395e-05!GO:0009967;positive regulation of signal transduction;5.22570485906363e-05!GO:0031324;negative regulation of cellular metabolic process;5.51071671491445e-05!GO:0043021;ribonucleoprotein binding;5.61250750562829e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.97832844812158e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.22031722123182e-05!GO:0035257;nuclear hormone receptor binding;6.82309669091826e-05!GO:0005819;spindle;7.54955083402844e-05!GO:0006839;mitochondrial transport;8.90822531371533e-05!GO:0019899;enzyme binding;9.29653880333537e-05!GO:0042802;identical protein binding;0.000100738435555737!GO:0031968;organelle outer membrane;0.000100738435555737!GO:0000151;ubiquitin ligase complex;0.00010091537968563!GO:0006626;protein targeting to mitochondrion;0.000109457633157033!GO:0005905;coated pit;0.000110809543244238!GO:0005773;vacuole;0.000117513097613255!GO:0005813;centrosome;0.000125843186507844!GO:0031982;vesicle;0.000126085612724169!GO:0019867;outer membrane;0.000131583702374413!GO:0050789;regulation of biological process;0.000133487572816891!GO:0007243;protein kinase cascade;0.000146943264935014!GO:0030119;AP-type membrane coat adaptor complex;0.000156074864154871!GO:0065009;regulation of a molecular function;0.000156074864154871!GO:0030867;rough endoplasmic reticulum membrane;0.000166018920440527!GO:0008033;tRNA processing;0.000171488729488545!GO:0005769;early endosome;0.000173701201942156!GO:0030880;RNA polymerase complex;0.000173820996373587!GO:0031410;cytoplasmic vesicle;0.000181334417976819!GO:0016126;sterol biosynthetic process;0.000185502819068117!GO:0016310;phosphorylation;0.000189002196282864!GO:0016563;transcription activator activity;0.000193592100978801!GO:0000786;nucleosome;0.00020226892432053!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000210076296609393!GO:0030131;clathrin adaptor complex;0.000217513760578454!GO:0051168;nuclear export;0.000222664169879941!GO:0009892;negative regulation of metabolic process;0.000231835343795312!GO:0006612;protein targeting to membrane;0.000237824071019431!GO:0005741;mitochondrial outer membrane;0.000238584068087572!GO:0051329;interphase of mitotic cell cycle;0.000266496923863622!GO:0033116;ER-Golgi intermediate compartment membrane;0.000270537500476906!GO:0007010;cytoskeleton organization and biogenesis;0.000285993843579615!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000293538206891876!GO:0043681;protein import into mitochondrion;0.000320813129551495!GO:0048471;perinuclear region of cytoplasm;0.000321816032073509!GO:0030132;clathrin coat of coated pit;0.000342549581376013!GO:0008610;lipid biosynthetic process;0.000364929676370319!GO:0006261;DNA-dependent DNA replication;0.000366426868327107!GO:0030036;actin cytoskeleton organization and biogenesis;0.00038396509512274!GO:0005048;signal sequence binding;0.000389362555765469!GO:0007006;mitochondrial membrane organization and biogenesis;0.00039827949431915!GO:0005815;microtubule organizing center;0.000409075964198792!GO:0000323;lytic vacuole;0.000415637853526703!GO:0005764;lysosome;0.000415637853526703!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000428229047427212!GO:0000428;DNA-directed RNA polymerase complex;0.000428229047427212!GO:0007088;regulation of mitosis;0.000448397108027006!GO:0008092;cytoskeletal protein binding;0.000455826187973657!GO:0005885;Arp2/3 protein complex;0.000460560087705781!GO:0006082;organic acid metabolic process;0.000471983330369348!GO:0019752;carboxylic acid metabolic process;0.000473246146439988!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0004785257415488!GO:0051325;interphase;0.000488301751907137!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000494239530612248!GO:0005791;rough endoplasmic reticulum;0.00053418721854741!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000551288960714197!GO:0031072;heat shock protein binding;0.000571966460470861!GO:0016363;nuclear matrix;0.000600519936663195!GO:0008250;oligosaccharyl transferase complex;0.000600758406024038!GO:0008632;apoptotic program;0.000638821781961304!GO:0008186;RNA-dependent ATPase activity;0.000670524977093506!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000721411535425888!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00075615336725504!GO:0043065;positive regulation of apoptosis;0.000770481322324356!GO:0000049;tRNA binding;0.000882641298572143!GO:0051920;peroxiredoxin activity;0.000899598577069409!GO:0048518;positive regulation of biological process;0.000901175951759621!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000919915247070503!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000922237615757225!GO:0044452;nucleolar part;0.00095950028332381!GO:0016044;membrane organization and biogenesis;0.000964489162907009!GO:0015980;energy derivation by oxidation of organic compounds;0.000964489162907009!GO:0004576;oligosaccharyl transferase activity;0.000972590120425949!GO:0030176;integral to endoplasmic reticulum membrane;0.00097556447699471!GO:0007264;small GTPase mediated signal transduction;0.000976782831215529!GO:0043068;positive regulation of programmed cell death;0.000994407693839986!GO:0030658;transport vesicle membrane;0.00102338815960032!GO:0016481;negative regulation of transcription;0.00103564067973297!GO:0001726;ruffle;0.0010376472390357!GO:0050662;coenzyme binding;0.0010424584279739!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00104645504608589!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00114269047807829!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00114269047807829!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00114269047807829!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00114269047807829!GO:0046474;glycerophospholipid biosynthetic process;0.00116971666022455!GO:0051252;regulation of RNA metabolic process;0.00116971666022455!GO:0000075;cell cycle checkpoint;0.00120089291462079!GO:0006383;transcription from RNA polymerase III promoter;0.00122395938912496!GO:0006891;intra-Golgi vesicle-mediated transport;0.00129745927317886!GO:0006520;amino acid metabolic process;0.00137955752815425!GO:0006414;translational elongation;0.0014784716686152!GO:0043488;regulation of mRNA stability;0.00147951026375016!GO:0043487;regulation of RNA stability;0.00147951026375016!GO:0006695;cholesterol biosynthetic process;0.00151290165936683!GO:0000059;protein import into nucleus, docking;0.00152245674509092!GO:0046483;heterocycle metabolic process;0.00154324159340888!GO:0004004;ATP-dependent RNA helicase activity;0.00165336759718862!GO:0051789;response to protein stimulus;0.00165336759718862!GO:0006986;response to unfolded protein;0.00165336759718862!GO:0030029;actin filament-based process;0.00168079558752228!GO:0006402;mRNA catabolic process;0.00168079558752228!GO:0048037;cofactor binding;0.00170863731935105!GO:0019843;rRNA binding;0.00189306599123753!GO:0030031;cell projection biogenesis;0.00189978675283116!GO:0048468;cell development;0.00198670914738474!GO:0007051;spindle organization and biogenesis;0.0020786720864279!GO:0046489;phosphoinositide biosynthetic process;0.00208849489416823!GO:0030663;COPI coated vesicle membrane;0.0020913587463282!GO:0030126;COPI vesicle coat;0.0020913587463282!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00210207731062091!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00216257465483958!GO:0003690;double-stranded DNA binding;0.0021785914374564!GO:0006979;response to oxidative stress;0.00225132219684235!GO:0018196;peptidyl-asparagine modification;0.00232555080597247!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00232555080597247!GO:0005684;U2-dependent spliceosome;0.00236806856981579!GO:0048500;signal recognition particle;0.00260336612448452!GO:0003729;mRNA binding;0.00264999522804182!GO:0045893;positive regulation of transcription, DNA-dependent;0.00266050358599063!GO:0006401;RNA catabolic process;0.00267275496044906!GO:0030125;clathrin vesicle coat;0.00269601171212581!GO:0030665;clathrin coated vesicle membrane;0.00269601171212581!GO:0051087;chaperone binding;0.00279008455673709!GO:0006417;regulation of translation;0.00302640258011143!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00310620625589946!GO:0003684;damaged DNA binding;0.00312924381269528!GO:0009165;nucleotide biosynthetic process;0.00316863999633065!GO:0008139;nuclear localization sequence binding;0.00335173032864779!GO:0030660;Golgi-associated vesicle membrane;0.00339792246904992!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00347855304526246!GO:0045941;positive regulation of transcription;0.00353875257253186!GO:0046467;membrane lipid biosynthetic process;0.00416967043075131!GO:0015631;tubulin binding;0.00416967043075131!GO:0019222;regulation of metabolic process;0.00435482530249815!GO:0030137;COPI-coated vesicle;0.00435542890605357!GO:0030133;transport vesicle;0.0044075213105628!GO:0006650;glycerophospholipid metabolic process;0.00443937631599281!GO:0035258;steroid hormone receptor binding;0.00447653528400347!GO:0005657;replication fork;0.00453225114538961!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00472707133882538!GO:0017166;vinculin binding;0.00509345437392291!GO:0050790;regulation of catalytic activity;0.00521739107401693!GO:0051540;metal cluster binding;0.00525557719452167!GO:0051536;iron-sulfur cluster binding;0.00525557719452167!GO:0009116;nucleoside metabolic process;0.00564601454864486!GO:0051098;regulation of binding;0.00580768715526118!GO:0008652;amino acid biosynthetic process;0.00580768715526118!GO:0008312;7S RNA binding;0.0060224945092701!GO:0005149;interleukin-1 receptor binding;0.00625601420309407!GO:0007050;cell cycle arrest;0.00629892595520309!GO:0048487;beta-tubulin binding;0.0064411204965578!GO:0051287;NAD binding;0.00666708819019998!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00692411054384943!GO:0045047;protein targeting to ER;0.00692411054384943!GO:0006118;electron transport;0.00716107876009627!GO:0030134;ER to Golgi transport vesicle;0.00719581968723358!GO:0006611;protein export from nucleus;0.00724366331152276!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00735966290637809!GO:0016197;endosome transport;0.00741153931217933!GO:0006595;polyamine metabolic process;0.00741153931217933!GO:0006352;transcription initiation;0.00744913998409744!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00749051802937146!GO:0016272;prefoldin complex;0.00779131141797756!GO:0006289;nucleotide-excision repair;0.00789020280432776!GO:0008361;regulation of cell size;0.00814288440889082!GO:0030503;regulation of cell redox homeostasis;0.00840649378246597!GO:0006917;induction of apoptosis;0.00848584118232194!GO:0003711;transcription elongation regulator activity;0.00851667297425008!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00858535059287049!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00864873489608526!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00864873489608526!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00864873489608526!GO:0008180;signalosome;0.00866657903867229!GO:0005856;cytoskeleton;0.00866657903867229!GO:0030384;phosphoinositide metabolic process;0.00895246888468544!GO:0009112;nucleobase metabolic process;0.00908184117975393!GO:0016741;transferase activity, transferring one-carbon groups;0.00908561977935146!GO:0043022;ribosome binding;0.00917635459662101!GO:0008094;DNA-dependent ATPase activity;0.00921877717280891!GO:0006405;RNA export from nucleus;0.0093302094029346!GO:0030027;lamellipodium;0.00937622185544956!GO:0051128;regulation of cellular component organization and biogenesis;0.00949168052846779!GO:0008168;methyltransferase activity;0.00958270292679667!GO:0045045;secretory pathway;0.00967709869230991!GO:0016251;general RNA polymerase II transcription factor activity;0.00967709869230991!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00968647175538296!GO:0048144;fibroblast proliferation;0.00975903951233352!GO:0048145;regulation of fibroblast proliferation;0.00975903951233352!GO:0005758;mitochondrial intermembrane space;0.00983250033420534!GO:0032984;macromolecular complex disassembly;0.00994191404266242!GO:0004674;protein serine/threonine kinase activity;0.00997540885369642!GO:0048146;positive regulation of fibroblast proliferation;0.0100181326495606!GO:0016049;cell growth;0.010040856627235!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.010107228474934!GO:0015399;primary active transmembrane transporter activity;0.010107228474934!GO:0051101;regulation of DNA binding;0.0102226931472561!GO:0016791;phosphoric monoester hydrolase activity;0.0105980841179812!GO:0005832;chaperonin-containing T-complex;0.0108036193561213!GO:0006950;response to stress;0.0111056821797847!GO:0012502;induction of programmed cell death;0.0111241421442899!GO:0008637;apoptotic mitochondrial changes;0.0111278423503933!GO:0030521;androgen receptor signaling pathway;0.0115522742104614!GO:0006749;glutathione metabolic process;0.0115522742104614!GO:0030127;COPII vesicle coat;0.0117158059314122!GO:0012507;ER to Golgi transport vesicle membrane;0.0117158059314122!GO:0000096;sulfur amino acid metabolic process;0.0122140596431839!GO:0030659;cytoplasmic vesicle membrane;0.012356932091671!GO:0043624;cellular protein complex disassembly;0.0129342268297414!GO:0051052;regulation of DNA metabolic process;0.0129644695659899!GO:0031326;regulation of cellular biosynthetic process;0.012985454644842!GO:0000775;chromosome, pericentric region;0.012985454644842!GO:0031970;organelle envelope lumen;0.01389859909049!GO:0003682;chromatin binding;0.0139584177511194!GO:0015992;proton transport;0.0139584177511194!GO:0031902;late endosome membrane;0.0139642581982141!GO:0001558;regulation of cell growth;0.0142206349998688!GO:0005874;microtubule;0.0143891039710657!GO:0031529;ruffle organization and biogenesis;0.0144665032080899!GO:0030833;regulation of actin filament polymerization;0.0146297231240673!GO:0008243;plasminogen activator activity;0.0151914441276285!GO:0009166;nucleotide catabolic process;0.0152942967953284!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0153082670368596!GO:0006354;RNA elongation;0.015642778609159!GO:0009303;rRNA transcription;0.0156625836981028!GO:0005869;dynactin complex;0.0156847789323354!GO:0016311;dephosphorylation;0.0156847789323354!GO:0043241;protein complex disassembly;0.0158464649027321!GO:0006818;hydrogen transport;0.0158643105806985!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0159078610829073!GO:0015002;heme-copper terminal oxidase activity;0.0159078610829073!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0159078610829073!GO:0004129;cytochrome-c oxidase activity;0.0159078610829073!GO:0032508;DNA duplex unwinding;0.0159078610829073!GO:0032392;DNA geometric change;0.0159078610829073!GO:0008022;protein C-terminus binding;0.0160568908476066!GO:0016125;sterol metabolic process;0.0162379214415617!GO:0030145;manganese ion binding;0.0164068991169408!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0165680317726867!GO:0004721;phosphoprotein phosphatase activity;0.0168176774589035!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0169677035674924!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0170123972919612!GO:0003746;translation elongation factor activity;0.0171711167746695!GO:0030032;lamellipodium biogenesis;0.0172599376218408!GO:0006497;protein amino acid lipidation;0.0174218923419528!GO:0007093;mitotic cell cycle checkpoint;0.0174481579879236!GO:0045334;clathrin-coated endocytic vesicle;0.0174481579879236!GO:0045892;negative regulation of transcription, DNA-dependent;0.0174481579879236!GO:0065007;biological regulation;0.0175104699336939!GO:0009889;regulation of biosynthetic process;0.0175303776674371!GO:0000082;G1/S transition of mitotic cell cycle;0.0178991133550598!GO:0000209;protein polyubiquitination;0.0179886761946902!GO:0046822;regulation of nucleocytoplasmic transport;0.0188006684090632!GO:0006733;oxidoreduction coenzyme metabolic process;0.0189101110383684!GO:0006506;GPI anchor biosynthetic process;0.0191356899454261!GO:0005637;nuclear inner membrane;0.0196087025433828!GO:0007021;tubulin folding;0.0197388219558777!GO:0006740;NADPH regeneration;0.0200211316191446!GO:0006098;pentose-phosphate shunt;0.0200211316191446!GO:0006302;double-strand break repair;0.0202096751976906!GO:0005862;muscle thin filament tropomyosin;0.0202777462717202!GO:0006144;purine base metabolic process;0.020743241954969!GO:0035035;histone acetyltransferase binding;0.0213810939618097!GO:0006007;glucose catabolic process;0.0221217475726334!GO:0045792;negative regulation of cell size;0.0224268156647428!GO:0006730;one-carbon compound metabolic process;0.0229017103728718!GO:0004722;protein serine/threonine phosphatase activity;0.0233757286870796!GO:0016584;nucleosome positioning;0.0235180563624354!GO:0008234;cysteine-type peptidase activity;0.0240824623567771!GO:0006376;mRNA splice site selection;0.0241599660193996!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0241599660193996!GO:0006643;membrane lipid metabolic process;0.0241761137830457!GO:0051539;4 iron, 4 sulfur cluster binding;0.024601310006412!GO:0030308;negative regulation of cell growth;0.024601310006412!GO:0030128;clathrin coat of endocytic vesicle;0.024601310006412!GO:0030669;clathrin-coated endocytic vesicle membrane;0.024601310006412!GO:0030122;AP-2 adaptor complex;0.024601310006412!GO:0004518;nuclease activity;0.0246456592820337!GO:0006505;GPI anchor metabolic process;0.024851725703554!GO:0042158;lipoprotein biosynthetic process;0.0248759991459393!GO:0006509;membrane protein ectodomain proteolysis;0.0250418067861961!GO:0033619;membrane protein proteolysis;0.0250418067861961!GO:0022890;inorganic cation transmembrane transporter activity;0.0250418067861961!GO:0006607;NLS-bearing substrate import into nucleus;0.0250694963956707!GO:0004680;casein kinase activity;0.0252529117392489!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0255106921654678!GO:0008538;proteasome activator activity;0.0258157221569046!GO:0016408;C-acyltransferase activity;0.0259463766322925!GO:0030041;actin filament polymerization;0.0259463766322925!GO:0003678;DNA helicase activity;0.0259811580813371!GO:0051338;regulation of transferase activity;0.0260046664802487!GO:0046983;protein dimerization activity;0.0260046664802487!GO:0000086;G2/M transition of mitotic cell cycle;0.0262721923722137!GO:0006519;amino acid and derivative metabolic process;0.026584309140748!GO:0006984;ER-nuclear signaling pathway;0.0266044361581442!GO:0043284;biopolymer biosynthetic process;0.0266907300399803!GO:0022411;cellular component disassembly;0.0266907300399803!GO:0044433;cytoplasmic vesicle part;0.0266907300399803!GO:0051272;positive regulation of cell motility;0.0268725659463487!GO:0040017;positive regulation of locomotion;0.0268725659463487!GO:0009119;ribonucleoside metabolic process;0.0268725659463487!GO:0048660;regulation of smooth muscle cell proliferation;0.0269060973316129!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.027223142200653!GO:0000339;RNA cap binding;0.027223142200653!GO:0006284;base-excision repair;0.02725282445783!GO:0031272;regulation of pseudopodium formation;0.02725282445783!GO:0031269;pseudopodium formation;0.02725282445783!GO:0031344;regulation of cell projection organization and biogenesis;0.02725282445783!GO:0031268;pseudopodium organization and biogenesis;0.02725282445783!GO:0031346;positive regulation of cell projection organization and biogenesis;0.02725282445783!GO:0031274;positive regulation of pseudopodium formation;0.02725282445783!GO:0000776;kinetochore;0.0273004257826202!GO:0032981;mitochondrial respiratory chain complex I assembly;0.027447614803433!GO:0010257;NADH dehydrogenase complex assembly;0.027447614803433!GO:0033108;mitochondrial respiratory chain complex assembly;0.027447614803433!GO:0006268;DNA unwinding during replication;0.0278809352775849!GO:0008287;protein serine/threonine phosphatase complex;0.0283160295356456!GO:0046966;thyroid hormone receptor binding;0.028323483457024!GO:0031124;mRNA 3'-end processing;0.0283705810099214!GO:0007034;vacuolar transport;0.0285457200044521!GO:0007052;mitotic spindle organization and biogenesis;0.0285457200044521!GO:0000287;magnesium ion binding;0.0289622638393872!GO:0042770;DNA damage response, signal transduction;0.0291009628157929!GO:0046519;sphingoid metabolic process;0.0295566393768555!GO:0050750;low-density lipoprotein receptor binding;0.0296092059322633!GO:0009451;RNA modification;0.0303918348787481!GO:0005774;vacuolar membrane;0.0305444822431806!GO:0003756;protein disulfide isomerase activity;0.0307231369339848!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0307231369339848!GO:0001836;release of cytochrome c from mitochondria;0.0312585848013434!GO:0051537;2 iron, 2 sulfur cluster binding;0.0315525338512639!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0316824841368638!GO:0006778;porphyrin metabolic process;0.0316824841368638!GO:0033013;tetrapyrrole metabolic process;0.0316824841368638!GO:0051716;cellular response to stimulus;0.0318918912136143!GO:0006779;porphyrin biosynthetic process;0.0324337041589248!GO:0033014;tetrapyrrole biosynthetic process;0.0324337041589248!GO:0030433;ER-associated protein catabolic process;0.0330836968190132!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0330836968190132!GO:0008426;protein kinase C inhibitor activity;0.0338334162874517!GO:0045926;negative regulation of growth;0.0338977725681357!GO:0043189;H4/H2A histone acetyltransferase complex;0.0341988218840426!GO:0031301;integral to organelle membrane;0.0342242327973946!GO:0032507;maintenance of cellular protein localization;0.0346159243841941!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0347062463474673!GO:0033673;negative regulation of kinase activity;0.0347113807495274!GO:0006469;negative regulation of protein kinase activity;0.0347113807495274!GO:0044255;cellular lipid metabolic process;0.0351393408100575!GO:0007265;Ras protein signal transduction;0.0359677792215596!GO:0008097;5S rRNA binding;0.0366743019356345!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0366747839042458!GO:0035267;NuA4 histone acetyltransferase complex;0.0366747839042458!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0371723452407445!GO:0015036;disulfide oxidoreductase activity;0.0373411587400222!GO:0012506;vesicle membrane;0.03774852144431!GO:0030911;TPR domain binding;0.0384011698991444!GO:0030508;thiol-disulfide exchange intermediate activity;0.0384437326290868!GO:0043414;biopolymer methylation;0.0384437326290868!GO:0004527;exonuclease activity;0.0391294959160242!GO:0008601;protein phosphatase type 2A regulator activity;0.0401567858149439!GO:0008213;protein amino acid alkylation;0.0405435591320869!GO:0006479;protein amino acid methylation;0.0405435591320869!GO:0006767;water-soluble vitamin metabolic process;0.0415481688370365!GO:0005784;translocon complex;0.0415481688370365!GO:0031371;ubiquitin conjugating enzyme complex;0.042336485258402!GO:0044262;cellular carbohydrate metabolic process;0.0424238110034137!GO:0008047;enzyme activator activity;0.0435414950181152!GO:0008629;induction of apoptosis by intracellular signals;0.0437788801177344!GO:0006644;phospholipid metabolic process;0.0444901873519435!GO:0006672;ceramide metabolic process;0.0445299160539122!GO:0030216;keratinocyte differentiation;0.0446898655798855!GO:0051348;negative regulation of transferase activity;0.0447998902935122!GO:0043549;regulation of kinase activity;0.0448804949634494!GO:0006378;mRNA polyadenylation;0.0458256568476785!GO:0050681;androgen receptor binding;0.0462917475736919!GO:0007004;telomere maintenance via telomerase;0.0464991381629946!GO:0008299;isoprenoid biosynthetic process;0.0467368601960557!GO:0022406;membrane docking;0.0472529515791059!GO:0048278;vesicle docking;0.0472529515791059!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0472529515791059!GO:0030518;steroid hormone receptor signaling pathway;0.047700984368672!GO:0008017;microtubule binding;0.0477111869851626!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.047956728803819!GO:0006310;DNA recombination;0.0481832449357653!GO:0043154;negative regulation of caspase activity;0.0492758942111496
|sample_id=11292
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=trachea
|top_motifs=TP53:2.28453204493;VSX1,2:2.03901056338;TBX4,5:1.98192688553;ZEB1:1.78424128607;SNAI1..3:1.53891665673;ADNP_IRX_SIX_ZHX:1.52800332627;ZNF148:1.15953525421;PDX1:1.01010526454;PPARG:0.960405317757;HAND1,2:0.955069041649;ONECUT1,2:0.929596372815;NKX2-3_NKX2-5:0.916386828865;POU1F1:0.908066260652;NKX2-2,8:0.858240534674;CRX:0.826553537269;CEBPA,B_DDIT3:0.822269940481;MYOD1:0.819947761289;TEF:0.797366397322;POU2F1..3:0.773201746709;NANOG:0.772771601486;NR5A1,2:0.767770340998;FOXQ1:0.74055630566;TBP:0.697097875868;TEAD1:0.691835214149;CDC5L:0.63137241934;FOS_FOS{B,L1}_JUN{B,D}:0.627751821163;ELK1,4_GABP{A,B1}:0.591729252039;XCPE1{core}:0.552428666826;NFIL3:0.541450100199;ZNF423:0.498647318878;BACH2:0.475901285801;ARID5B:0.472051470176;bHLH_family:0.465185151435;MTF1:0.462731035607;TFCP2:0.462595241503;POU5F1:0.461328982087;FOXM1:0.452829003229;GTF2A1,2:0.427594396914;FOXL1:0.417260628115;LMO2:0.407099827175;STAT5{A,B}:0.394696872144;SP1:0.392889750754;EBF1:0.383309978152;FOSL2:0.379921435141;IKZF1:0.375859297935;NKX3-2:0.305334892822;FOX{I1,J2}:0.294867340747;PBX1:0.247287961454;GLI1..3:0.244844229991;LHX3,4:0.228150082864;HLF:0.222816029312;LEF1_TCF7_TCF7L1,2:0.202998574617;RBPJ:0.197765440597;ELF1,2,4:0.188861933778;ZNF238:0.160835604587;HOX{A4,D4}:0.159379706138;PAX4:0.146895955446;GFI1B:0.136994156459;AR:0.130683010846;POU6F1:0.128330973733;PAX1,9:0.126674200882;TLX1..3_NFIC{dimer}:0.122316925567;NFE2:0.113762101653;ZNF143:0.103284529377;TFAP2{A,C}:0.0879571106675;HES1:0.0795885347024;SOX17:0.0705342246447;NFY{A,B,C}:0.0582341635752;YY1:0.0395556112236;GZF1:0.0381670131354;PAX8:0.0270160830142;TLX2:0.0219529812157;HIF1A:0.0015845351419;HOX{A5,B5}:0.000175581106412;OCT4_SOX2{dimer}:-0.0353556714692;FOX{F1,F2,J1}:-0.0500624296;E2F1..5:-0.063857255428;SMAD1..7,9:-0.070822317421;SOX{8,9,10}:-0.0743343221048;ETS1,2:-0.0836543677517;GFI1:-0.0874871356404;NFKB1_REL_RELA:-0.0899028764041;KLF4:-0.0902456306992;NR1H4:-0.0905392215604;HNF4A_NR2F1,2:-0.0923794120421;PITX1..3:-0.106884871254;T:-0.108512634218;MYB:-0.11453139277;TFDP1:-0.115005800829;GATA6:-0.117075022938;NR6A1:-0.118617638098;HNF1A:-0.124940591193;NKX2-1,4:-0.133163303292;HSF1,2:-0.136745675464;FOXD3:-0.138389744203;PAX2:-0.151042435376;NRF1:-0.1674496343;TFAP4:-0.172174567629;MYBL2:-0.172293151278;GCM1,2:-0.175461577331;NKX6-1,2:-0.183643365858;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.207183277367;AHR_ARNT_ARNT2:-0.21662581649;SOX2:-0.217156410249;REST:-0.230079212605;MAZ:-0.236235480061;EN1,2:-0.241970809384;ATF2:-0.259666859882;FOXA2:-0.261898565533;ATF4:-0.283824753704;IRF7:-0.29596355991;JUN:-0.2973204969;ZBTB6:-0.297826459787;ATF5_CREB3:-0.306912946064;ZIC1..3:-0.318209901062;NFIX:-0.338614618888;SPIB:-0.349785479917;EP300:-0.35298697392;GTF2I:-0.378705775421;FOXP1:-0.383650054371;CREB1:-0.388012598059;NHLH1,2:-0.397874497419;UFEwm:-0.403195032769;SPI1:-0.42417033296;MED-1{core}:-0.425184822157;FOXN1:-0.427073023634;NR3C1:-0.43145705269;RXR{A,B,G}:-0.434234324442;RUNX1..3:-0.438411183836;NFE2L2:-0.438922858908;CUX2:-0.439455857431;PRRX1,2:-0.44916421124;ESR1:-0.477756626815;HIC1:-0.485756186547;RORA:-0.48648079828;SPZ1:-0.492862913058;EVI1:-0.493363435231;RFX2..5_RFXANK_RFXAP:-0.500096988881;FOXO1,3,4:-0.500670306764;RREB1:-0.505376708372;STAT2,4,6:-0.509488856539;PAX5:-0.512754565201;HOX{A6,A7,B6,B7}:-0.524213055609;RFX1:-0.537042291334;HMX1:-0.54300803152;AIRE:-0.555959108516;HMGA1,2:-0.568524909478;MEF2{A,B,C,D}:-0.569145829197;HBP1_HMGB_SSRP1_UBTF:-0.581568671612;ZNF384:-0.601660729486;ZFP161:-0.603286319085;PAX6:-0.614984434554;MAFB:-0.621588810266;POU3F1..4:-0.63756938809;DBP:-0.640990722797;TFAP2B:-0.647876379547;SRF:-0.674948329673;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.681830805021;NFATC1..3:-0.697503690919;NKX3-1:-0.715922448929;ALX1:-0.769629650216;ALX4:-0.774969762811;SOX5:-0.777599502442;MZF1:-0.779559464876;ZBTB16:-0.783987275614;TGIF1:-0.843692701672;PRDM1:-0.848924173074;NFE2L1:-0.86273430105;FOX{D1,D2}:-0.877060569824;RXRA_VDR{dimer}:-0.877553792375;TAL1_TCF{3,4,12}:-0.882490232589;TOPORS:-0.883088173047;BREu{core}:-0.90428393157;MYFfamily:-0.914488807054;CDX1,2,4:-0.926132361017;PAX3,7:-0.93353594245;IRF1,2:-0.994964420413;EGR1..3:-0.995373016193;MTE{core}:-0.997980342191;ATF6:-1.00461544863;BPTF:-1.01890802897;PATZ1:-1.02027580424;FOXP3:-1.03126559295;DMAP1_NCOR{1,2}_SMARC:-1.04519873989;ESRRA:-1.07645832948;IKZF2:-1.10584823642;STAT1,3:-1.13627871035;NANOG{mouse}:-1.15920868202;GATA4:-1.16528438671;HOXA9_MEIS1:-1.17154885652;SREBF1,2:-1.26079919633;XBP1:-1.42811414232
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11292-117A5;search_select_hide=table117:FF:11292-117A5
}}
}}

Latest revision as of 16:31, 3 June 2020

Name:Tracheal Epithelial Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11092
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetrachea
dev stage50 years old adult
sexfemale
age50
cell typetracheal epithelial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1875
catalog numberCA504-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005201
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11092 CAGE DRX008522 DRR009394
Accession ID Hg19

Library idBAMCTSS
CNhs11092 DRZ000819 DRZ002204
Accession ID Hg38

Library idBAMCTSS
CNhs11092 DRZ012169 DRZ013554
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.16
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0861
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.141
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0234
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.234
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.284
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0.0399
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0.0764
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0132
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.48
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.134
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.088
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0209
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.446
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory-0.0277
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0123
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.494
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0306
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.152
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0764
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0399
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11092

Jaspar motifP-value
MA0002.20.544
MA0003.10.535
MA0004.10.476
MA0006.10.216
MA0007.10.321
MA0009.10.1
MA0014.10.346
MA0017.10.17
MA0018.20.0401
MA0019.10.399
MA0024.10.934
MA0025.10.483
MA0027.10.319
MA0028.10.00752
MA0029.10.711
MA0030.10.571
MA0031.10.124
MA0035.20.501
MA0038.10.942
MA0039.20.00144
MA0040.10.318
MA0041.10.617
MA0042.10.507
MA0043.10.971
MA0046.10.288
MA0047.20.171
MA0048.10.419
MA0050.15.52629e-11
MA0051.15.67232e-5
MA0052.10.224
MA0055.11.38501e-4
MA0057.10.0552
MA0058.10.198
MA0059.10.377
MA0060.10.498
MA0061.10.536
MA0062.20.0278
MA0065.20.0217
MA0066.10.232
MA0067.10.126
MA0068.10.0115
MA0069.10.782
MA0070.10.915
MA0071.10.246
MA0072.10.873
MA0073.10.737
MA0074.10.337
MA0076.10.143
MA0077.10.691
MA0078.10.812
MA0079.20.772
MA0080.20.0449
MA0081.10.362
MA0083.10.114
MA0084.10.329
MA0087.10.838
MA0088.10.214
MA0090.10.00152
MA0091.10.166
MA0092.10.56
MA0093.10.361
MA0099.23.13058e-14
MA0100.10.222
MA0101.10.774
MA0102.20.704
MA0103.11.50996e-7
MA0104.20.654
MA0105.10.457
MA0106.19.16578e-12
MA0107.10.824
MA0108.20.96
MA0111.10.758
MA0112.20.0744
MA0113.10.447
MA0114.10.0537
MA0115.10.58
MA0116.10.0657
MA0117.10.778
MA0119.10.159
MA0122.10.95
MA0124.10.342
MA0125.10.057
MA0131.10.911
MA0135.10.993
MA0136.10.17
MA0137.20.0483
MA0138.20.928
MA0139.10.506
MA0140.10.667
MA0141.10.773
MA0142.10.198
MA0143.10.98
MA0144.10.877
MA0145.10.0343
MA0146.10.167
MA0147.10.41
MA0148.10.0299
MA0149.10.0285
MA0150.10.133
MA0152.10.561
MA0153.10.371
MA0154.10.21
MA0155.10.904
MA0156.10.146
MA0157.10.098
MA0159.10.269
MA0160.10.912
MA0162.10.11
MA0163.10.254
MA0164.10.831
MA0258.10.799
MA0259.10.734



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11092

Novel motifP-value
10.3
100.788
1000.343
1010.0168
1020.255
1030.204
1040.265
1050.0248
1060.0896
1070.032
1080.666
1090.0015
110.108
1100.0577
1110.144
1120.711
1130.393
1140.251
1150.798
1160.863
1170.191
1180.889
1190.148
120.451
1200.0287
1210.889
1220.0261
1230.893
1240.477
1250.414
1260.656
1270.147
1280.692
1290.192
130.0127
1300.751
1310.555
1320.414
1337.85303e-4
1340.343
1350.989
1360.164
1370.189
1380.887
1390.965
140.88
1400.456
1410.426
1420.262
1430.853
1440.074
1450.116
1460.00515
1470.0781
1480.366
1490.886
150.895
1500.263
1510.435
1520.0459
1530.32
1540.793
1550.872
1560.364
1570.515
1580.167
1590.402
160.0798
1600.169
1610.655
1620.216
1630.909
1640.364
1650.497
1660.304
1670.452
1680.549
1690.0563
170.136
180.218
190.863
20.368
200.479
210.792
220.383
230.438
240.0318
250.719
260.228
270.643
280.586
290.269
30.415
300.133
310.934
320.145
330.0561
340.9
350.379
360.306
370.32
380.272
390.298
40.423
400.00949
410.455
420.395
430.526
440.761
450.225
460.59
470.155
480.032
490.856
50.724
500.366
510.96
520.581
530.524
540.791
550.792
560.337
570.226
580.762
590.246
60.35
600.281
610.529
620.962
630.107
640.242
650.476
660.168
670.778
680.454
690.696
70.182
700.0257
710.107
720.88
730.0295
740.0179
750.0821
760.817
770.0294
780.00998
790.125
80.238
800.94
810.497
820.978
830.406
840.741
850.958
860.871
870.0333
880.5
890.117
90.995
900.958
910.677
920.955
930.959
940.729
950.0607
960.82
970.811
980.762
990.0404



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11092


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002202 (epithelial cell of tracheobronchial tree)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002632 (epithelial cell of lower respiratory tract)
0002368 (respiratory epithelial cell)
0000307 (tracheal epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0003126 (trachea)
0002100 (trunk)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0005178 (thoracic cavity element)
0000072 (segment of respiratory tract)
0005177 (trunk region element)
0000464 (anatomical space)
0001005 (respiratory airway)
0005181 (thoracic segment organ)
0010317 (germ layer / neural crest derived structure)
0007196 (tracheobronchial tree)
0000065 (respiratory tract)
0001558 (lower respiratory tract)
0001004 (respiratory system)
0002224 (thoracic cavity)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000189 (human tracheal epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
CL:0000377 (tracheoblast)

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