FF:11595-120H2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005220 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005220 | ||
|accession_numbers=CAGE;DRX008438;DRR009310;DRZ000735;DRZ002120;DRZ012085;DRZ013470 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037244;DRR041610;DRZ007252 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0001851,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0000353,UBERON:0005177,UBERON:0005172,UBERON:0006853,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0007685,UBERON:0004810,UBERON:0001285,UBERON:0004134,UBERON:0001225,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0008987,UBERON:0007684,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000075,CL:0000066,CL:0002371,CL:0002078,CL:0000255,CL:0000239,CL:1000615,CL:1000497,CL:0002518,CL:0002681,CL:1000449,CL:1000507,CL:0002584,CL:1000494,CL:0002306 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151,FF:0000155 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Proximal%2520Tubular%2520Epithelial%2520Cell%252c%2520donor2.CNhs12087.11595-120H2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11595-120H2 | |id=FF:11595-120H2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000155 | ||
|is_obsolete= | |||
|library_id=CNhs12087 | |||
|library_id_phase_based=2:CNhs12087 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11595 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.CGTACG.11595 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11595 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.CGTACG.11595 | |||
|name=Renal Proximal Tubular Epithelial Cell, donor2 | |name=Renal Proximal Tubular Epithelial Cell, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12087,LSID839,release011,COMPLETED | |profile_hcage=CNhs12087,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10014,,, | |profile_srnaseq=SRhi10014,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0.262706372468367,-0.0577648937039694,-0.069787134813848,0,0,0,0,0,0,0,0,0,0,0,0,0,0.27190984117776,0,0,0,0,0,-0.0979578962680575,0,0,0.410270346142977,0,0,0,0,0,0,0,0,0,0,0,0,-0.145899716966013,0.161756643632983,0,0,0,0,0,0,0,0.293743089380642,0,0,0,0,0,0,0,-0.0969923612426051,0,0,0.16536274525527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218994004196205,0,0,0,0.050306363718977,0.00141902306722508,0,0,0,0,-0.0980353512377064,-0.0071240145667116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0349795923117226,0,0,0,-0.0337483751719732,-0.213890346097581,0,0,0,0,0,0 | |||
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| |||
|rna_box=120 | |rna_box=120 | ||
|rna_catalog_number=SC4105 | |rna_catalog_number=SC4105 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=120H2 | |rna_tube_id=120H2 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10014.CGTACG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.55734542839733e-217!GO:0005737;cytoplasm;5.12551168664611e-205!GO:0044444;cytoplasmic part;3.30831570992084e-150!GO:0043226;organelle;1.04305212237562e-146!GO:0043229;intracellular organelle;1.62463405631625e-146!GO:0043231;intracellular membrane-bound organelle;2.1930009869959e-140!GO:0043227;membrane-bound organelle;5.26498990355107e-140!GO:0044422;organelle part;3.47874676669713e-131!GO:0044446;intracellular organelle part;4.62292004946556e-130!GO:0005739;mitochondrion;6.09940619211486e-81!GO:0032991;macromolecular complex;2.40303987526917e-80!GO:0030529;ribonucleoprotein complex;2.80356024087889e-73!GO:0005515;protein binding;8.77372238326883e-69!GO:0044237;cellular metabolic process;5.02711443346661e-67!GO:0044238;primary metabolic process;9.63030649714975e-66!GO:0031090;organelle membrane;8.89994209021112e-59!GO:0043233;organelle lumen;2.23335639974864e-55!GO:0031974;membrane-enclosed lumen;2.23335639974864e-55!GO:0009058;biosynthetic process;8.04460765115947e-54!GO:0005840;ribosome;1.06439459824129e-53!GO:0043170;macromolecule metabolic process;1.54627609189799e-53!GO:0019538;protein metabolic process;2.64202660961729e-53!GO:0044429;mitochondrial part;1.7230253444625e-52!GO:0006412;translation;1.65062465623647e-50!GO:0003723;RNA binding;5.69326133618351e-49!GO:0044249;cellular biosynthetic process;5.92019880077433e-49!GO:0044260;cellular macromolecule metabolic process;7.60185609814112e-48!GO:0044267;cellular protein metabolic process;2.35179963164964e-47!GO:0044428;nuclear part;2.35179963164964e-47!GO:0003735;structural constituent of ribosome;2.41659151345417e-47!GO:0031967;organelle envelope;8.5878482565748e-45!GO:0031975;envelope;2.2078738630907e-44!GO:0009059;macromolecule biosynthetic process;1.69488690831232e-41!GO:0033279;ribosomal subunit;3.10363793753131e-40!GO:0043234;protein complex;6.18155623049245e-40!GO:0016043;cellular component organization and biogenesis;7.89884990366605e-40!GO:0005829;cytosol;1.17632412761427e-37!GO:0015031;protein transport;1.42001121857885e-36!GO:0033036;macromolecule localization;4.30309555924548e-36!GO:0005740;mitochondrial envelope;1.49984006194461e-34!GO:0008104;protein localization;2.1057632201534e-34!GO:0045184;establishment of protein localization;1.68017099616234e-33!GO:0031966;mitochondrial membrane;1.87609922776286e-32!GO:0005634;nucleus;3.11498956509815e-32!GO:0019866;organelle inner membrane;1.32045844425518e-30!GO:0043228;non-membrane-bound organelle;2.57357612929618e-30!GO:0043232;intracellular non-membrane-bound organelle;2.57357612929618e-30!GO:0006396;RNA processing;3.38503505075287e-30!GO:0005743;mitochondrial inner membrane;4.99931339615626e-29!GO:0046907;intracellular transport;1.8215499431059e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.89458088607377e-28!GO:0006996;organelle organization and biogenesis;7.04915619753165e-28!GO:0031981;nuclear lumen;2.22670951909733e-27!GO:0065003;macromolecular complex assembly;7.13496882089557e-27!GO:0006886;intracellular protein transport;7.38750845250964e-25!GO:0022607;cellular component assembly;1.59316411333368e-24!GO:0012505;endomembrane system;4.58315912990538e-24!GO:0016071;mRNA metabolic process;1.4814487009956e-23!GO:0044445;cytosolic part;1.28257264752717e-22!GO:0031980;mitochondrial lumen;3.29268782154194e-22!GO:0005759;mitochondrial matrix;3.29268782154194e-22!GO:0005783;endoplasmic reticulum;7.23819757758863e-22!GO:0015934;large ribosomal subunit;8.88159491298579e-22!GO:0008380;RNA splicing;1.34264736209891e-21!GO:0006119;oxidative phosphorylation;1.84138885862304e-21!GO:0043283;biopolymer metabolic process;4.9716743832952e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.05886422643759e-20!GO:0044455;mitochondrial membrane part;4.24073544207674e-20!GO:0006397;mRNA processing;5.78850982770704e-20!GO:0051186;cofactor metabolic process;1.17987405489765e-19!GO:0015935;small ribosomal subunit;1.7684192367393e-19!GO:0006259;DNA metabolic process;3.82509324623232e-18!GO:0044432;endoplasmic reticulum part;4.39568774422381e-18!GO:0051641;cellular localization;7.07314625088999e-18!GO:0000166;nucleotide binding;7.50672220380529e-18!GO:0048770;pigment granule;8.86561355981227e-18!GO:0042470;melanosome;8.86561355981227e-18!GO:0051649;establishment of cellular localization;9.47768830216935e-18!GO:0006457;protein folding;1.51206611079902e-17!GO:0005794;Golgi apparatus;2.41418041167894e-16!GO:0005746;mitochondrial respiratory chain;3.40714351766353e-16!GO:0007049;cell cycle;3.40714351766353e-16!GO:0005681;spliceosome;6.23322616237955e-16!GO:0006732;coenzyme metabolic process;8.77836179242856e-16!GO:0012501;programmed cell death;1.29044712878814e-15!GO:0016874;ligase activity;2.5518058105124e-15!GO:0006915;apoptosis;3.08502030645423e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.43524892047134e-15!GO:0005761;mitochondrial ribosome;3.94813475150837e-15!GO:0000313;organellar ribosome;3.94813475150837e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.97583986014115e-15!GO:0043412;biopolymer modification;5.03418559477905e-15!GO:0005654;nucleoplasm;6.35078097016959e-15!GO:0010467;gene expression;7.31586413286058e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.88833708718487e-15!GO:0003954;NADH dehydrogenase activity;7.88833708718487e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.88833708718487e-15!GO:0044265;cellular macromolecule catabolic process;1.3953109215451e-14!GO:0044248;cellular catabolic process;1.52349135646463e-14!GO:0016462;pyrophosphatase activity;1.95782262692426e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.05460485394356e-14!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.30994473665089e-14!GO:0008219;cell death;2.89796457672882e-14!GO:0016265;death;2.89796457672882e-14!GO:0005789;endoplasmic reticulum membrane;2.89796457672882e-14!GO:0016817;hydrolase activity, acting on acid anhydrides;2.97941561192305e-14!GO:0017111;nucleoside-triphosphatase activity;4.34692380738597e-14!GO:0006464;protein modification process;5.98562189051346e-14!GO:0005730;nucleolus;8.29138994315242e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.01412256527427e-13!GO:0032553;ribonucleotide binding;1.27015097620541e-13!GO:0032555;purine ribonucleotide binding;1.27015097620541e-13!GO:0017076;purine nucleotide binding;1.48664977823632e-13!GO:0008134;transcription factor binding;2.28560368346745e-13!GO:0051082;unfolded protein binding;2.61389140012605e-13!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.7702299411939e-13!GO:0009057;macromolecule catabolic process;3.66132139217589e-13!GO:0000502;proteasome complex (sensu Eukaryota);4.43467350278539e-13!GO:0006605;protein targeting;5.01134155367163e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.57291276778975e-13!GO:0042773;ATP synthesis coupled electron transport;5.57291276778975e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.65601818523598e-13!GO:0045271;respiratory chain complex I;5.65601818523598e-13!GO:0005747;mitochondrial respiratory chain complex I;5.65601818523598e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.83435904364863e-13!GO:0009055;electron carrier activity;5.95887776778632e-13!GO:0022618;protein-RNA complex assembly;1.47788966606558e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.87468474471904e-12!GO:0000278;mitotic cell cycle;2.30540887549795e-12!GO:0043285;biopolymer catabolic process;2.51854088022844e-12!GO:0022402;cell cycle process;2.67458428246428e-12!GO:0044451;nucleoplasm part;3.32261365900929e-12!GO:0043067;regulation of programmed cell death;1.12250304487662e-11!GO:0042981;regulation of apoptosis;1.31037242498584e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.41915653528169e-11!GO:0019941;modification-dependent protein catabolic process;1.7057582843727e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.7057582843727e-11!GO:0005524;ATP binding;1.85599493096949e-11!GO:0005635;nuclear envelope;2.3462944593665e-11!GO:0032559;adenyl ribonucleotide binding;2.36109789094694e-11!GO:0016740;transferase activity;2.55151254809704e-11!GO:0044257;cellular protein catabolic process;2.7526892284587e-11!GO:0006511;ubiquitin-dependent protein catabolic process;2.86120297860976e-11!GO:0030554;adenyl nucleotide binding;3.74016149605293e-11!GO:0043687;post-translational protein modification;4.13383249510257e-11!GO:0006512;ubiquitin cycle;5.33718546659862e-11!GO:0051188;cofactor biosynthetic process;7.36308077135757e-11!GO:0016192;vesicle-mediated transport;1.06228498015099e-10!GO:0030163;protein catabolic process;2.42224192070701e-10!GO:0006163;purine nucleotide metabolic process;2.53290739588222e-10!GO:0048193;Golgi vesicle transport;2.76568147134635e-10!GO:0009259;ribonucleotide metabolic process;2.77621397577912e-10!GO:0007005;mitochondrion organization and biogenesis;3.72690455559683e-10!GO:0009150;purine ribonucleotide metabolic process;5.87518953333038e-10!GO:0005768;endosome;5.93973043246726e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.4402158821462e-10!GO:0008135;translation factor activity, nucleic acid binding;7.39876780904649e-10!GO:0031965;nuclear membrane;9.67285506452695e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;1.17345829017618e-09!GO:0000375;RNA splicing, via transesterification reactions;1.17345829017618e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.17345829017618e-09!GO:0006399;tRNA metabolic process;1.21981961891471e-09!GO:0009056;catabolic process;1.39661246566798e-09!GO:0016491;oxidoreductase activity;1.4648472088383e-09!GO:0009141;nucleoside triphosphate metabolic process;1.84665764153561e-09!GO:0006164;purine nucleotide biosynthetic process;1.89541067920688e-09!GO:0009199;ribonucleoside triphosphate metabolic process;1.99763853983087e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.69495910942883e-09!GO:0009260;ribonucleotide biosynthetic process;3.9659585869536e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.17202715962883e-09!GO:0009144;purine nucleoside triphosphate metabolic process;4.17202715962883e-09!GO:0005793;ER-Golgi intermediate compartment;4.34702945446849e-09!GO:0009152;purine ribonucleotide biosynthetic process;4.38333094519627e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.88265116039208e-09!GO:0048523;negative regulation of cellular process;5.00275771961011e-09!GO:0006461;protein complex assembly;5.02676404252754e-09!GO:0043069;negative regulation of programmed cell death;6.04681030268774e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.09722927657654e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.09722927657654e-08!GO:0022403;cell cycle phase;1.1585871325404e-08!GO:0009108;coenzyme biosynthetic process;1.1585871325404e-08!GO:0043066;negative regulation of apoptosis;1.39556138148943e-08!GO:0042254;ribosome biogenesis and assembly;1.60469849607378e-08!GO:0006446;regulation of translational initiation;1.64424820073618e-08!GO:0006974;response to DNA damage stimulus;1.71659097883156e-08!GO:0007067;mitosis;2.1123752695562e-08!GO:0006413;translational initiation;2.1123752695562e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.25484091437019e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.25484091437019e-08!GO:0044453;nuclear membrane part;2.25484091437019e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.25484091437019e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.25484091437019e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.25484091437019e-08!GO:0000087;M phase of mitotic cell cycle;2.50713101039816e-08!GO:0003712;transcription cofactor activity;2.7189528163917e-08!GO:0044427;chromosomal part;3.00193931466196e-08!GO:0051276;chromosome organization and biogenesis;3.70467900779181e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.76133499183395e-08!GO:0015986;ATP synthesis coupled proton transport;4.02039170427354e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.02039170427354e-08!GO:0009117;nucleotide metabolic process;4.31551340068111e-08!GO:0030532;small nuclear ribonucleoprotein complex;4.67508652735048e-08!GO:0006916;anti-apoptosis;5.71025569105541e-08!GO:0006793;phosphorus metabolic process;6.16538585431402e-08!GO:0006796;phosphate metabolic process;6.16538585431402e-08!GO:0015078;hydrogen ion transmembrane transporter activity;6.16538585431402e-08!GO:0000785;chromatin;6.55994056558049e-08!GO:0048519;negative regulation of biological process;6.87707390126192e-08!GO:0043038;amino acid activation;7.02719038388288e-08!GO:0006418;tRNA aminoacylation for protein translation;7.02719038388288e-08!GO:0043039;tRNA aminoacylation;7.02719038388288e-08!GO:0005694;chromosome;7.12062784269131e-08!GO:0046034;ATP metabolic process;7.13317443611837e-08!GO:0019829;cation-transporting ATPase activity;8.06628154943556e-08!GO:0006913;nucleocytoplasmic transport;8.15968916875314e-08!GO:0044431;Golgi apparatus part;9.37489146381813e-08!GO:0051726;regulation of cell cycle;1.03220671644038e-07!GO:0000074;regulation of progression through cell cycle;1.15485843117269e-07!GO:0003743;translation initiation factor activity;1.19485422279556e-07!GO:0005773;vacuole;1.24899162505604e-07!GO:0006323;DNA packaging;1.25361438111245e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.49742387237173e-07!GO:0051169;nuclear transport;1.49742387237173e-07!GO:0051246;regulation of protein metabolic process;1.53113095294235e-07!GO:0017038;protein import;1.62070573793193e-07!GO:0016787;hydrolase activity;1.83584465956413e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.28436737980796e-07!GO:0065004;protein-DNA complex assembly;2.67489371748836e-07!GO:0009060;aerobic respiration;2.87279110543797e-07!GO:0006752;group transfer coenzyme metabolic process;3.07822842059795e-07!GO:0065002;intracellular protein transport across a membrane;3.14977244131853e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.2073004029019e-07!GO:0031497;chromatin assembly;3.27206984235136e-07!GO:0042623;ATPase activity, coupled;3.43762831643345e-07!GO:0006754;ATP biosynthetic process;3.52321948361549e-07!GO:0006753;nucleoside phosphate metabolic process;3.52321948361549e-07!GO:0008639;small protein conjugating enzyme activity;3.61793563800508e-07!GO:0030120;vesicle coat;3.76102155504835e-07!GO:0030662;coated vesicle membrane;3.76102155504835e-07!GO:0006333;chromatin assembly or disassembly;4.26120384236524e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.80626171105813e-07!GO:0006334;nucleosome assembly;5.30962745547917e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.51062717255778e-07!GO:0016469;proton-transporting two-sector ATPase complex;5.57531682202346e-07!GO:0004842;ubiquitin-protein ligase activity;5.97914714039279e-07!GO:0006260;DNA replication;6.3133428166018e-07!GO:0045259;proton-transporting ATP synthase complex;9.13498347638717e-07!GO:0008565;protein transporter activity;9.48979904509792e-07!GO:0009719;response to endogenous stimulus;1.00555426647781e-06!GO:0019787;small conjugating protein ligase activity;1.0222416209855e-06!GO:0045333;cellular respiration;1.29868172705947e-06!GO:0006281;DNA repair;1.31051106336765e-06!GO:0003924;GTPase activity;1.31051106336765e-06!GO:0005643;nuclear pore;1.34478836344613e-06!GO:0006082;organic acid metabolic process;1.35026370035453e-06!GO:0008610;lipid biosynthetic process;1.45083488685117e-06!GO:0048475;coated membrane;1.59597909406881e-06!GO:0030117;membrane coat;1.59597909406881e-06!GO:0019752;carboxylic acid metabolic process;1.85487947318203e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.90720146831065e-06!GO:0016887;ATPase activity;2.00935025779121e-06!GO:0000323;lytic vacuole;2.05138890067307e-06!GO:0005764;lysosome;2.05138890067307e-06!GO:0016126;sterol biosynthetic process;2.40735633303714e-06!GO:0000279;M phase;2.49385168679945e-06!GO:0005762;mitochondrial large ribosomal subunit;2.85153129458888e-06!GO:0000315;organellar large ribosomal subunit;2.85153129458888e-06!GO:0044440;endosomal part;2.92322261405035e-06!GO:0010008;endosome membrane;2.92322261405035e-06!GO:0016310;phosphorylation;2.99000723805166e-06!GO:0008654;phospholipid biosynthetic process;3.21256559710726e-06!GO:0016881;acid-amino acid ligase activity;3.63337188460471e-06!GO:0016023;cytoplasmic membrane-bound vesicle;3.9180746720516e-06!GO:0016604;nuclear body;4.15624596515282e-06!GO:0051301;cell division;4.23190916791462e-06!GO:0006084;acetyl-CoA metabolic process;4.71579386515518e-06!GO:0045454;cell redox homeostasis;5.85702846319419e-06!GO:0051187;cofactor catabolic process;5.9177913709043e-06!GO:0000139;Golgi membrane;6.06488919486274e-06!GO:0006099;tricarboxylic acid cycle;6.62520667917779e-06!GO:0046356;acetyl-CoA catabolic process;6.62520667917779e-06!GO:0005770;late endosome;6.87935903131952e-06!GO:0031988;membrane-bound vesicle;6.94489054640714e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.08731969029867e-06!GO:0042802;identical protein binding;7.76126141232311e-06!GO:0016779;nucleotidyltransferase activity;1.27250483531957e-05!GO:0046930;pore complex;1.47910788837601e-05!GO:0006364;rRNA processing;1.59545445992348e-05!GO:0009109;coenzyme catabolic process;1.62974227472319e-05!GO:0004298;threonine endopeptidase activity;1.63308560123067e-05!GO:0007243;protein kinase cascade;1.65398978369331e-05!GO:0006091;generation of precursor metabolites and energy;1.94198663831448e-05!GO:0016072;rRNA metabolic process;2.33646144747844e-05!GO:0006695;cholesterol biosynthetic process;2.41889525580218e-05!GO:0048468;cell development;2.55294075048035e-05!GO:0006888;ER to Golgi vesicle-mediated transport;2.79993396010382e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.34426502628596e-05!GO:0044262;cellular carbohydrate metabolic process;3.72382585886838e-05!GO:0005788;endoplasmic reticulum lumen;4.22670816996296e-05!GO:0031410;cytoplasmic vesicle;4.37486068482219e-05!GO:0043623;cellular protein complex assembly;4.95827900100549e-05!GO:0031982;vesicle;5.14424451066117e-05!GO:0031252;leading edge;5.59253959739438e-05!GO:0016563;transcription activator activity;6.30844621760014e-05!GO:0051427;hormone receptor binding;6.83105350591011e-05!GO:0015630;microtubule cytoskeleton;7.38608789937991e-05!GO:0008632;apoptotic program;8.14107412797215e-05!GO:0005525;GTP binding;8.44435994908388e-05!GO:0030176;integral to endoplasmic reticulum membrane;8.79287724624837e-05!GO:0031968;organelle outer membrane;9.47450631229312e-05!GO:0032446;protein modification by small protein conjugation;9.66150547010719e-05!GO:0065009;regulation of a molecular function;9.94748796104448e-05!GO:0048522;positive regulation of cellular process;9.99211785103439e-05!GO:0000314;organellar small ribosomal subunit;0.000107936740226927!GO:0005763;mitochondrial small ribosomal subunit;0.000107936740226927!GO:0000786;nucleosome;0.000117457010510204!GO:0019867;outer membrane;0.000118405698926243!GO:0016567;protein ubiquitination;0.000122082144694444!GO:0005798;Golgi-associated vesicle;0.000123500317521761!GO:0035257;nuclear hormone receptor binding;0.000133544698304609!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000149220673727792!GO:0051170;nuclear import;0.000150522813373288!GO:0003714;transcription corepressor activity;0.000150861430286323!GO:0006520;amino acid metabolic process;0.000163993628537728!GO:0016044;membrane organization and biogenesis;0.000167651170294268!GO:0005741;mitochondrial outer membrane;0.000185345151775124!GO:0030029;actin filament-based process;0.000186977807915018!GO:0006366;transcription from RNA polymerase II promoter;0.000190358862395838!GO:0006818;hydrogen transport;0.000196960659131418!GO:0015992;proton transport;0.000200196374916248!GO:0005905;coated pit;0.000212875302501245!GO:0005667;transcription factor complex;0.000212875302501245!GO:0008637;apoptotic mitochondrial changes;0.000217691320547432!GO:0009165;nucleotide biosynthetic process;0.000219393564457617!GO:0006839;mitochondrial transport;0.000221672459253828!GO:0016853;isomerase activity;0.000225155496176165!GO:0046474;glycerophospholipid biosynthetic process;0.000225155496176165!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000229616143179606!GO:0006606;protein import into nucleus;0.000238468931624091!GO:0048471;perinuclear region of cytoplasm;0.000240191705498563!GO:0051329;interphase of mitotic cell cycle;0.000246500967842329!GO:0050657;nucleic acid transport;0.00027865443760039!GO:0051236;establishment of RNA localization;0.00027865443760039!GO:0050658;RNA transport;0.00027865443760039!GO:0030118;clathrin coat;0.00028138016210735!GO:0006403;RNA localization;0.000288387719714999!GO:0016607;nuclear speck;0.000302504314548852!GO:0006626;protein targeting to mitochondrion;0.000314387151438038!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000324818039077622!GO:0015399;primary active transmembrane transporter activity;0.000324818039077622!GO:0015980;energy derivation by oxidation of organic compounds;0.000329709176475315!GO:0051325;interphase;0.000348122363052539!GO:0007010;cytoskeleton organization and biogenesis;0.000351332335549054!GO:0016568;chromatin modification;0.000353391179775657!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000374067797778842!GO:0033116;ER-Golgi intermediate compartment membrane;0.00038431328819047!GO:0003899;DNA-directed RNA polymerase activity;0.000387535684217177!GO:0046467;membrane lipid biosynthetic process;0.000401716599341997!GO:0000245;spliceosome assembly;0.000406003212113664!GO:0007264;small GTPase mediated signal transduction;0.000413272929716098!GO:0019899;enzyme binding;0.000447098172079454!GO:0005769;early endosome;0.000449623699740245!GO:0043681;protein import into mitochondrion;0.000455407036304835!GO:0006979;response to oxidative stress;0.000477078314293966!GO:0030133;transport vesicle;0.000503603441755144!GO:0008250;oligosaccharyl transferase complex;0.000513055422594743!GO:0008092;cytoskeletal protein binding;0.00053434995430876!GO:0008361;regulation of cell size;0.000537610285760631!GO:0043065;positive regulation of apoptosis;0.000546026428822101!GO:0003697;single-stranded DNA binding;0.00056598693380577!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000586237669206671!GO:0016049;cell growth;0.000588421466177661!GO:0005774;vacuolar membrane;0.00061082367122436!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000645300740887126!GO:0009967;positive regulation of signal transduction;0.000663404785266922!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000664348000957381!GO:0032561;guanyl ribonucleotide binding;0.000674078818171401!GO:0019001;guanyl nucleotide binding;0.000674078818171401!GO:0003713;transcription coactivator activity;0.00068177585063748!GO:0043068;positive regulation of programmed cell death;0.000699507393465899!GO:0030867;rough endoplasmic reticulum membrane;0.000773837610151104!GO:0030658;transport vesicle membrane;0.000777784176910045!GO:0005791;rough endoplasmic reticulum;0.000790819548995046!GO:0001558;regulation of cell growth;0.000836971170208891!GO:0050662;coenzyme binding;0.000840797205411148!GO:0051920;peroxiredoxin activity;0.000845689895392883!GO:0051789;response to protein stimulus;0.000852691976425448!GO:0006986;response to unfolded protein;0.000852691976425448!GO:0045786;negative regulation of progression through cell cycle;0.000941367565576651!GO:0016564;transcription repressor activity;0.000943093007425007!GO:0030125;clathrin vesicle coat;0.00100946434178836!GO:0030665;clathrin coated vesicle membrane;0.00100946434178836!GO:0005048;signal sequence binding;0.00111043425181521!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00114460427673564!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00114460427673564!GO:0001836;release of cytochrome c from mitochondria;0.00115369030090577!GO:0007006;mitochondrial membrane organization and biogenesis;0.00118239639214799!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00122120892998411!GO:0016301;kinase activity;0.0012600071149825!GO:0006613;cotranslational protein targeting to membrane;0.00126844410291331!GO:0051287;NAD binding;0.0013790360615832!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00144088225292863!GO:0043021;ribonucleoprotein binding;0.00144246435938971!GO:0006066;alcohol metabolic process;0.00145544073744619!GO:0018196;peptidyl-asparagine modification;0.00147901314786638!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00147901314786638!GO:0030132;clathrin coat of coated pit;0.00154834568342071!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00156942793393158!GO:0008026;ATP-dependent helicase activity;0.00165964511633552!GO:0004386;helicase activity;0.00165964511633552!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00171737004677531!GO:0019843;rRNA binding;0.00177959466201841!GO:0044255;cellular lipid metabolic process;0.00178857522066906!GO:0044437;vacuolar part;0.00180707468877368!GO:0048037;cofactor binding;0.00180707468877368!GO:0016125;sterol metabolic process;0.0018555369712267!GO:0006807;nitrogen compound metabolic process;0.00196931194146994!GO:0043488;regulation of mRNA stability;0.00196931194146994!GO:0043487;regulation of RNA stability;0.00196931194146994!GO:0031324;negative regulation of cellular metabolic process;0.00203609730355226!GO:0005885;Arp2/3 protein complex;0.0020620246682782!GO:0043492;ATPase activity, coupled to movement of substances;0.00209132516866836!GO:0004576;oligosaccharyl transferase activity;0.00209797049710023!GO:0030119;AP-type membrane coat adaptor complex;0.00210133972033016!GO:0008033;tRNA processing;0.00239192304269214!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00240666161467432!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00243980807890619!GO:0030660;Golgi-associated vesicle membrane;0.00247181251429061!GO:0005684;U2-dependent spliceosome;0.00249461374041403!GO:0048518;positive regulation of biological process;0.00249461374041403!GO:0031902;late endosome membrane;0.00254929846346601!GO:0051028;mRNA transport;0.00264304503359424!GO:0016859;cis-trans isomerase activity;0.00264832906666001!GO:0046489;phosphoinositide biosynthetic process;0.00271180775014452!GO:0016272;prefoldin complex;0.00272219828180016!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00281472509526011!GO:0005765;lysosomal membrane;0.00286124825323835!GO:0001726;ruffle;0.00288900402902144!GO:0019318;hexose metabolic process;0.00291331032846641!GO:0000096;sulfur amino acid metabolic process;0.00314404541458077!GO:0046483;heterocycle metabolic process;0.00316521979632505!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00317086870040866!GO:0030659;cytoplasmic vesicle membrane;0.0031808062485471!GO:0030131;clathrin adaptor complex;0.0032729449669989!GO:0048487;beta-tubulin binding;0.00335404323448419!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0033675472446916!GO:0005996;monosaccharide metabolic process;0.00337831997451683!GO:0009308;amine metabolic process;0.0033836733947136!GO:0008652;amino acid biosynthetic process;0.00338957148471321!GO:0000151;ubiquitin ligase complex;0.00350676463182942!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00360935107682962!GO:0009892;negative regulation of metabolic process;0.00367908684343493!GO:0043281;regulation of caspase activity;0.00369937654573135!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00369937654573135!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00369937654573135!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00369937654573135!GO:0003676;nucleic acid binding;0.00370822658927934!GO:0030880;RNA polymerase complex;0.00373144300536616!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00409513877265406!GO:0006519;amino acid and derivative metabolic process;0.00411642109709181!GO:0006007;glucose catabolic process;0.0044554632496775!GO:0005819;spindle;0.00471557012579543!GO:0006778;porphyrin metabolic process;0.00477016623810982!GO:0033013;tetrapyrrole metabolic process;0.00477016623810982!GO:0035258;steroid hormone receptor binding;0.00511326689808753!GO:0040008;regulation of growth;0.00517380812397501!GO:0007242;intracellular signaling cascade;0.00537335886813542!GO:0006595;polyamine metabolic process;0.00538409937697694!GO:0005975;carbohydrate metabolic process;0.00545042722319764!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00545964671976136!GO:0015002;heme-copper terminal oxidase activity;0.00545964671976136!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00545964671976136!GO:0004129;cytochrome-c oxidase activity;0.00545964671976136!GO:0051101;regulation of DNA binding;0.00573476236245594!GO:0050790;regulation of catalytic activity;0.00583600614499438!GO:0030145;manganese ion binding;0.00625978032861699!GO:0022890;inorganic cation transmembrane transporter activity;0.00630106493238461!GO:0017166;vinculin binding;0.00634980041857746!GO:0043566;structure-specific DNA binding;0.00634993984321347!GO:0051252;regulation of RNA metabolic process;0.00634993984321347!GO:0003724;RNA helicase activity;0.00659362366489533!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00661823085146184!GO:0006950;response to stress;0.00662991179555193!GO:0007088;regulation of mitosis;0.00663761279488963!GO:0006740;NADPH regeneration;0.00686142321654312!GO:0006098;pentose-phosphate shunt;0.00686142321654312!GO:0001666;response to hypoxia;0.00699736239763376!GO:0004674;protein serine/threonine kinase activity;0.00700067780851033!GO:0005815;microtubule organizing center;0.00704004156081875!GO:0006414;translational elongation;0.00707944980413549!GO:0030433;ER-associated protein catabolic process;0.00713308022550325!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00713308022550325!GO:0004680;casein kinase activity;0.00715159474939895!GO:0006767;water-soluble vitamin metabolic process;0.00729303267570231!GO:0005813;centrosome;0.00743325528237445!GO:0031301;integral to organelle membrane;0.00755206844532182!GO:0016311;dephosphorylation;0.00755206844532182!GO:0006917;induction of apoptosis;0.00758151493235294!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00778239032632488!GO:0008047;enzyme activator activity;0.00784826447161793!GO:0044433;cytoplasmic vesicle part;0.00794972773873872!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00799554559825118!GO:0000428;DNA-directed RNA polymerase complex;0.00799554559825118!GO:0033673;negative regulation of kinase activity;0.0083894016008785!GO:0006469;negative regulation of protein kinase activity;0.0083894016008785!GO:0006650;glycerophospholipid metabolic process;0.00839748111041802!GO:0006497;protein amino acid lipidation;0.00848984802849376!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00850011393598146!GO:0006749;glutathione metabolic process;0.00869933118909328!GO:0016791;phosphoric monoester hydrolase activity;0.0089947253700576!GO:0043154;negative regulation of caspase activity;0.00931244811404915!GO:0006633;fatty acid biosynthetic process;0.00952594249510299!GO:0006733;oxidoreduction coenzyme metabolic process;0.0096100453517344!GO:0044452;nucleolar part;0.00986659257236523!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00990758609049277!GO:0051348;negative regulation of transferase activity;0.00990985102607785!GO:0012502;induction of programmed cell death;0.0100460685409857!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0104302371278558!GO:0005874;microtubule;0.0105334729509451!GO:0042168;heme metabolic process;0.0106784481310696!GO:0006643;membrane lipid metabolic process;0.0106784481310696!GO:0051087;chaperone binding;0.0113111035190217!GO:0006612;protein targeting to membrane;0.0114511193524858!GO:0042158;lipoprotein biosynthetic process;0.01176382385672!GO:0004177;aminopeptidase activity;0.01176382385672!GO:0003684;damaged DNA binding;0.01176382385672!GO:0051168;nuclear export;0.0117970455438201!GO:0046519;sphingoid metabolic process;0.0120622977485748!GO:0006629;lipid metabolic process;0.0123023050569597!GO:0006220;pyrimidine nucleotide metabolic process;0.0125339439103703!GO:0050794;regulation of cellular process;0.0131770621729239!GO:0043284;biopolymer biosynthetic process;0.0135326494716485!GO:0006779;porphyrin biosynthetic process;0.0137812685822664!GO:0033014;tetrapyrrole biosynthetic process;0.0137812685822664!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0137881552915617!GO:0000049;tRNA binding;0.0138251170178407!GO:0046822;regulation of nucleocytoplasmic transport;0.014228314324298!GO:0030503;regulation of cell redox homeostasis;0.0143276141060383!GO:0006383;transcription from RNA polymerase III promoter;0.0143701596267147!GO:0006417;regulation of translation;0.0143701596267147!GO:0051098;regulation of binding;0.0149085445476187!GO:0003729;mRNA binding;0.0149299335160665!GO:0006509;membrane protein ectodomain proteolysis;0.0152532769425499!GO:0033619;membrane protein proteolysis;0.0152532769425499!GO:0006984;ER-nuclear signaling pathway;0.0155032341635643!GO:0016070;RNA metabolic process;0.0155597856106694!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0158924700902235!GO:0006458;'de novo' protein folding;0.0163890019267006!GO:0051084;'de novo' posttranslational protein folding;0.0163890019267006!GO:0031072;heat shock protein binding;0.0168756168550453!GO:0006401;RNA catabolic process;0.0170021399832982!GO:0006506;GPI anchor biosynthetic process;0.0170021399832982!GO:0045941;positive regulation of transcription;0.0173244594271618!GO:0046394;carboxylic acid biosynthetic process;0.0173948344781448!GO:0016053;organic acid biosynthetic process;0.0173948344781448!GO:0008186;RNA-dependent ATPase activity;0.0175765244661841!GO:0008287;protein serine/threonine phosphatase complex;0.01764745091192!GO:0005637;nuclear inner membrane;0.017948730006068!GO:0007051;spindle organization and biogenesis;0.0182305700560236!GO:0008203;cholesterol metabolic process;0.018808935131829!GO:0006672;ceramide metabolic process;0.0193314613472043!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0193884620291987!GO:0045334;clathrin-coated endocytic vesicle;0.0195939997623355!GO:0032508;DNA duplex unwinding;0.0195939997623355!GO:0032392;DNA geometric change;0.0195939997623355!GO:0031529;ruffle organization and biogenesis;0.0195939997623355!GO:0005869;dynactin complex;0.0197463421929262!GO:0016860;intramolecular oxidoreductase activity;0.0199181444512895!GO:0030031;cell projection biogenesis;0.0200645321870282!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0201630103829099!GO:0045792;negative regulation of cell size;0.0211615355771461!GO:0008139;nuclear localization sequence binding;0.0215362521857886!GO:0030308;negative regulation of cell growth;0.0216893929314412!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0217688189708695!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0219018180584205!GO:0030521;androgen receptor signaling pathway;0.0223498671651934!GO:0008538;proteasome activator activity;0.022384427979149!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0225117877289925!GO:0009116;nucleoside metabolic process;0.0225117877289925!GO:0004721;phosphoprotein phosphatase activity;0.022715754345111!GO:0006261;DNA-dependent DNA replication;0.0229943122037734!GO:0005657;replication fork;0.0235256273073424!GO:0006402;mRNA catabolic process;0.0240818629296902!GO:0051128;regulation of cellular component organization and biogenesis;0.0241092960561707!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0242391546358318!GO:0010257;NADH dehydrogenase complex assembly;0.0242391546358318!GO:0033108;mitochondrial respiratory chain complex assembly;0.0242391546358318!GO:0045893;positive regulation of transcription, DNA-dependent;0.0243824236338837!GO:0015036;disulfide oxidoreductase activity;0.0246399717184967!GO:0051540;metal cluster binding;0.0246664313810802!GO:0051536;iron-sulfur cluster binding;0.0246664313810802!GO:0012506;vesicle membrane;0.0255496872364956!GO:0033559;unsaturated fatty acid metabolic process;0.0256753177937201!GO:0006636;unsaturated fatty acid biosynthetic process;0.0256753177937201!GO:0046365;monosaccharide catabolic process;0.0261728702644131!GO:0006644;phospholipid metabolic process;0.0275753588625954!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0283181215301926!GO:0012510;trans-Golgi network transport vesicle membrane;0.0283181215301926!GO:0006505;GPI anchor metabolic process;0.0283381337459004!GO:0050178;phenylpyruvate tautomerase activity;0.0284564699707542!GO:0008629;induction of apoptosis by intracellular signals;0.0289335522934689!GO:0046426;negative regulation of JAK-STAT cascade;0.0294689252358067!GO:0006096;glycolysis;0.0296199506888902!GO:0006611;protein export from nucleus;0.0296458738333557!GO:0007040;lysosome organization and biogenesis;0.0304755582249694!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0304755582249694!GO:0006783;heme biosynthetic process;0.0305432275505741!GO:0006739;NADP metabolic process;0.0312048792445432!GO:0051338;regulation of transferase activity;0.0312506947819902!GO:0016776;phosphotransferase activity, phosphate group as acceptor;0.0313441010880928!GO:0043433;negative regulation of transcription factor activity;0.0314018146310854!GO:0006118;electron transport;0.0314849660476854!GO:0005862;muscle thin filament tropomyosin;0.0314849660476854!GO:0030027;lamellipodium;0.0315890891891622!GO:0006518;peptide metabolic process;0.0316019488554066!GO:0000118;histone deacetylase complex;0.0316917476023343!GO:0006470;protein amino acid dephosphorylation;0.0316917476023343!GO:0030134;ER to Golgi transport vesicle;0.0318447762532963!GO:0030663;COPI coated vesicle membrane;0.0318727649797851!GO:0030126;COPI vesicle coat;0.0318727649797851!GO:0008283;cell proliferation;0.0319715598141612!GO:0030508;thiol-disulfide exchange intermediate activity;0.0319715598141612!GO:0030140;trans-Golgi network transport vesicle;0.0319715598141612!GO:0032594;protein transport within lipid bilayer;0.0319715598141612!GO:0032907;transforming growth factor-beta3 production;0.0319715598141612!GO:0032596;protein transport into lipid raft;0.0319715598141612!GO:0032910;regulation of transforming growth factor-beta3 production;0.0319715598141612!GO:0032595;B cell receptor transport within lipid bilayer;0.0319715598141612!GO:0033606;chemokine receptor transport within lipid bilayer;0.0319715598141612!GO:0032600;chemokine receptor transport out of lipid raft;0.0319715598141612!GO:0032599;protein transport out of lipid raft;0.0319715598141612!GO:0032597;B cell receptor transport into lipid raft;0.0319715598141612!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0319715598141612!GO:0004448;isocitrate dehydrogenase activity;0.0319715598141612!GO:0035035;histone acetyltransferase binding;0.032072009535756!GO:0005938;cell cortex;0.0322978195140179!GO:0016481;negative regulation of transcription;0.0328042687456753!GO:0015631;tubulin binding;0.0328042687456753!GO:0019320;hexose catabolic process;0.0328042687456753!GO:0003756;protein disulfide isomerase activity;0.032981673960009!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.032981673960009!GO:0051085;chaperone cofactor-dependent protein folding;0.0333761005595916!GO:0009119;ribonucleoside metabolic process;0.0336212856275493!GO:0043022;ribosome binding;0.0336537083709423!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0336537083709423!GO:0016197;endosome transport;0.0337479731551145!GO:0007346;regulation of progression through mitotic cell cycle;0.0348279012418905!GO:0006730;one-carbon compound metabolic process;0.0350531124668457!GO:0000303;response to superoxide;0.0351096360196112!GO:0009112;nucleobase metabolic process;0.0352791720068043!GO:0044438;microbody part;0.0352791720068043!GO:0044439;peroxisomal part;0.0352791720068043!GO:0006790;sulfur metabolic process;0.0358466587740051!GO:0004004;ATP-dependent RNA helicase activity;0.0361610633786303!GO:0051716;cellular response to stimulus;0.036527085088401!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0366170403415555!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0368124842130371!GO:0000059;protein import into nucleus, docking;0.0370152932462499!GO:0000305;response to oxygen radical;0.0371571329942541!GO:0004860;protein kinase inhibitor activity;0.0374396451447025!GO:0040029;regulation of gene expression, epigenetic;0.0378007961293004!GO:0009303;rRNA transcription;0.0378622115192216!GO:0046983;protein dimerization activity;0.0379378537467545!GO:0044275;cellular carbohydrate catabolic process;0.0379709246713271!GO:0048144;fibroblast proliferation;0.0382118873141975!GO:0048145;regulation of fibroblast proliferation;0.0382118873141975!GO:0046164;alcohol catabolic process;0.0383005892482465!GO:0008625;induction of apoptosis via death domain receptors;0.038366096382695!GO:0051336;regulation of hydrolase activity;0.0384250936636945!GO:0006268;DNA unwinding during replication;0.0385789140313465!GO:0000287;magnesium ion binding;0.0386213834174047!GO:0008299;isoprenoid biosynthetic process;0.0386213834174047!GO:0003779;actin binding;0.0398942192010374!GO:0030384;phosphoinositide metabolic process;0.041380866255508!GO:0005832;chaperonin-containing T-complex;0.0414545489065169!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0414934504479531!GO:0000097;sulfur amino acid biosynthetic process;0.0418707929008027!GO:0030137;COPI-coated vesicle;0.0418946058737722!GO:0016783;sulfurtransferase activity;0.0419713973382495!GO:0006897;endocytosis;0.0427098264040368!GO:0010324;membrane invagination;0.0427098264040368!GO:0031326;regulation of cellular biosynthetic process;0.0430746362925436!GO:0030127;COPII vesicle coat;0.043188121459775!GO:0012507;ER to Golgi transport vesicle membrane;0.043188121459775!GO:0007033;vacuole organization and biogenesis;0.0437255243247798!GO:0045926;negative regulation of growth;0.0437255243247798!GO:0030128;clathrin coat of endocytic vesicle;0.044365696872654!GO:0030669;clathrin-coated endocytic vesicle membrane;0.044365696872654!GO:0030122;AP-2 adaptor complex;0.044365696872654!GO:0016717;oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water;0.0444199901401568!GO:0006289;nucleotide-excision repair;0.0444317691043497!GO:0008426;protein kinase C inhibitor activity;0.0445470807532481!GO:0007265;Ras protein signal transduction;0.044609446531219!GO:0030911;TPR domain binding;0.0446925044738542!GO:0043130;ubiquitin binding;0.0448060682042888!GO:0032182;small conjugating protein binding;0.0448060682042888!GO:0043086;negative regulation of catalytic activity;0.0449697465121244!GO:0008154;actin polymerization and/or depolymerization;0.0452136704628689!GO:0006891;intra-Golgi vesicle-mediated transport;0.0452438868430327!GO:0005758;mitochondrial intermembrane space;0.0453492769839238!GO:0007021;tubulin folding;0.0456024952274157!GO:0043549;regulation of kinase activity;0.0456024952274157!GO:0042364;water-soluble vitamin biosynthetic process;0.0458961282340497!GO:0008094;DNA-dependent ATPase activity;0.0462666447359827!GO:0031272;regulation of pseudopodium formation;0.046321282783779!GO:0031269;pseudopodium formation;0.046321282783779!GO:0031344;regulation of cell projection organization and biogenesis;0.046321282783779!GO:0031268;pseudopodium organization and biogenesis;0.046321282783779!GO:0031346;positive regulation of cell projection organization and biogenesis;0.046321282783779!GO:0031274;positive regulation of pseudopodium formation;0.046321282783779!GO:0008243;plasminogen activator activity;0.0463715670162816!GO:0032507;maintenance of cellular protein localization;0.0466046028189296!GO:0008064;regulation of actin polymerization and/or depolymerization;0.046634766721969!GO:0031903;microbody membrane;0.046634766721969!GO:0005778;peroxisomal membrane;0.046634766721969!GO:0016741;transferase activity, transferring one-carbon groups;0.046691424181373!GO:0048146;positive regulation of fibroblast proliferation;0.0476868660918346!GO:0000209;protein polyubiquitination;0.0481245640106107!GO:0016485;protein processing;0.0482616608731781!GO:0006769;nicotinamide metabolic process;0.0484244399719361!GO:0048500;signal recognition particle;0.0484660155611284!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0493479930276405!GO:0042982;amyloid precursor protein metabolic process;0.0496455045362051 | |||
|sample_id=11595 | |sample_id=11595 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=kidney | |sample_tissue=kidney | ||
|top_motifs=ZEB1:2.36162365664;SNAI1..3:2.0318175554;ESRRA:2.02423132964;XCPE1{core}:1.95071574081;MYOD1:1.82747632623;RXRA_VDR{dimer}:1.55539540028;LMO2:1.48182456392;PPARG:1.47886124978;VSX1,2:1.4523443342;ZNF423:1.42234644677;bHLH_family:1.421086806;SP1:1.23247609419;HNF1A:1.21264070205;ZNF148:1.20163095875;NR5A1,2:1.11187317459;NKX2-3_NKX2-5:0.976956160812;EBF1:0.963458733755;POU2F1..3:0.963002893017;GLI1..3:0.907149668335;TFCP2:0.871504123029;TFAP2{A,C}:0.844852716947;TEAD1:0.802696355596;ESR1:0.791852902703;NR6A1:0.787260459402;TBP:0.760310197672;LEF1_TCF7_TCF7L1,2:0.692564766439;NR3C1:0.686785828979;PBX1:0.636004826961;GTF2A1,2:0.60331110372;ADNP_IRX_SIX_ZHX:0.599243958094;HOX{A5,B5}:0.562043305842;ONECUT1,2:0.515123098882;TBX4,5:0.511142563103;TP53:0.499997218658;CRX:0.498468728768;STAT5{A,B}:0.472783388968;IKZF1:0.472350627849;TFAP4:0.398595912831;HAND1,2:0.384967556735;LHX3,4:0.382411170546;GZF1:0.3800393734;FOSL2:0.366608348322;TFAP2B:0.362818007822;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.336761444749;RORA:0.314524683544;NFY{A,B,C}:0.287496172573;TLX1..3_NFIC{dimer}:0.266132200327;FOS_FOS{B,L1}_JUN{B,D}:0.248993598435;HNF4A_NR2F1,2:0.243202687338;HIC1:0.238801109607;RXR{A,B,G}:0.224182092624;FOXQ1:0.210983816183;BACH2:0.210388473341;NKX3-2:0.181857338623;TEF:0.168046846764;RREB1:0.150756651072;NFE2L1:0.143907976445;ZBTB6:0.130009508054;GFI1:0.123652467987;POU1F1:0.115243450068;JUN:0.100462811664;MEF2{A,B,C,D}:0.0942095242712;NFE2:0.089357259469;SOX{8,9,10}:0.077400576429;NFKB1_REL_RELA:0.0673892766753;STAT2,4,6:0.0655167613825;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0496869900478;GFI1B:0.0272761378247;HMX1:0.0222783859546;AR:-0.0248834311451;ATF6:-0.0249085060182;POU5F1:-0.034841929848;E2F1..5:-0.0361745641424;REST:-0.0616900272637;PAX5:-0.0689250283288;ZIC1..3:-0.0807824433357;PAX6:-0.0922335177049;PRRX1,2:-0.109760781318;GTF2I:-0.110475963698;SPZ1:-0.115400065616;NFE2L2:-0.121705069678;POU3F1..4:-0.124120983167;MAZ:-0.125988851418;TAL1_TCF{3,4,12}:-0.131632170497;MAFB:-0.133091729043;HBP1_HMGB_SSRP1_UBTF:-0.137321536952;T:-0.152590236838;MTF1:-0.152798160229;GATA6:-0.165990519474;CEBPA,B_DDIT3:-0.178167952239;SMAD1..7,9:-0.179056817331;HLF:-0.204067669469;ALX4:-0.226865292968;NANOG:-0.228190712703;PAX1,9:-0.228916010948;ATF2:-0.23108813945;NKX2-2,8:-0.241787495652;UFEwm:-0.244734445441;MED-1{core}:-0.257760094836;TFDP1:-0.260215279058;CUX2:-0.282230149914;CDC5L:-0.28647629455;EP300:-0.296447014195;FOXL1:-0.297339211522;ETS1,2:-0.310597273399;NR1H4:-0.316908997134;PITX1..3:-0.334890361521;OCT4_SOX2{dimer}:-0.341391092288;RFX1:-0.369561770689;KLF4:-0.380066747166;MYB:-0.380527026831;FOX{F1,F2,J1}:-0.394535972416;MTE{core}:-0.397618701118;ZFP161:-0.402753219692;SRF:-0.407261418957;ZNF143:-0.416007569892;SPIB:-0.476592375975;ARID5B:-0.494624566137;HOX{A4,D4}:-0.49641854433;NFIL3:-0.513879151754;SOX2:-0.529124863849;SREBF1,2:-0.531470536525;PAX2:-0.535732369276;SPI1:-0.537343393416;HOX{A6,A7,B6,B7}:-0.539296517638;NKX2-1,4:-0.557766789578;SOX17:-0.573900962679;NHLH1,2:-0.577071307063;ATF4:-0.584322363582;HES1:-0.585327428562;RUNX1..3:-0.591091827942;FOXM1:-0.600721353625;ALX1:-0.602309371492;PAX8:-0.61786177339;MYBL2:-0.623135354463;DBP:-0.629951444116;IRF7:-0.661616435366;IRF1,2:-0.672355566061;ZNF238:-0.676647440851;EGR1..3:-0.681462186649;HOXA9_MEIS1:-0.691779940586;ATF5_CREB3:-0.708325567566;ELK1,4_GABP{A,B1}:-0.722364204021;FOXA2:-0.736271457154;NKX3-1:-0.760298709971;BREu{core}:-0.760811187077;RFX2..5_RFXANK_RFXAP:-0.775284143236;NRF1:-0.783235617249;PRDM1:-0.792674722852;PATZ1:-0.817733178116;PDX1:-0.841662306327;IKZF2:-0.846781281079;POU6F1:-0.848994285686;XBP1:-0.854369499383;PAX3,7:-0.877276631786;TOPORS:-0.899727436326;BPTF:-0.95414679739;FOX{I1,J2}:-0.958279794798;NFATC1..3:-0.968748360561;TGIF1:-0.990697586586;FOXO1,3,4:-0.997609070764;FOXN1:-1.0032168693;ZNF384:-1.01110983379;HIF1A:-1.02274254409;CREB1:-1.02791665747;MYFfamily:-1.03199956138;ELF1,2,4:-1.03938976263;SOX5:-1.05343833829;NFIX:-1.06534989883;FOXP3:-1.06637684403;GCM1,2:-1.07578558924;AIRE:-1.08323313925;MZF1:-1.09099875241;FOXP1:-1.09303790377;YY1:-1.12849558033;EN1,2:-1.1302008805;CDX1,2,4:-1.15703271234;DMAP1_NCOR{1,2}_SMARC:-1.15736952728;FOX{D1,D2}:-1.16466513056;NANOG{mouse}:-1.19265007343;PAX4:-1.20838665814;EVI1:-1.25712751968;HSF1,2:-1.31214427497;FOXD3:-1.33432686122;RBPJ:-1.34907886254;NKX6-1,2:-1.35625978395;STAT1,3:-1.44801678282;ZBTB16:-1.48413440778;HMGA1,2:-1.56096900785;AHR_ARNT_ARNT2:-1.61552802761;TLX2:-1.69105499216;GATA4:-1.77516324022 | |top_motifs=ZEB1:2.36162365664;SNAI1..3:2.0318175554;ESRRA:2.02423132964;XCPE1{core}:1.95071574081;MYOD1:1.82747632623;RXRA_VDR{dimer}:1.55539540028;LMO2:1.48182456392;PPARG:1.47886124978;VSX1,2:1.4523443342;ZNF423:1.42234644677;bHLH_family:1.421086806;SP1:1.23247609419;HNF1A:1.21264070205;ZNF148:1.20163095875;NR5A1,2:1.11187317459;NKX2-3_NKX2-5:0.976956160812;EBF1:0.963458733755;POU2F1..3:0.963002893017;GLI1..3:0.907149668335;TFCP2:0.871504123029;TFAP2{A,C}:0.844852716947;TEAD1:0.802696355596;ESR1:0.791852902703;NR6A1:0.787260459402;TBP:0.760310197672;LEF1_TCF7_TCF7L1,2:0.692564766439;NR3C1:0.686785828979;PBX1:0.636004826961;GTF2A1,2:0.60331110372;ADNP_IRX_SIX_ZHX:0.599243958094;HOX{A5,B5}:0.562043305842;ONECUT1,2:0.515123098882;TBX4,5:0.511142563103;TP53:0.499997218658;CRX:0.498468728768;STAT5{A,B}:0.472783388968;IKZF1:0.472350627849;TFAP4:0.398595912831;HAND1,2:0.384967556735;LHX3,4:0.382411170546;GZF1:0.3800393734;FOSL2:0.366608348322;TFAP2B:0.362818007822;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.336761444749;RORA:0.314524683544;NFY{A,B,C}:0.287496172573;TLX1..3_NFIC{dimer}:0.266132200327;FOS_FOS{B,L1}_JUN{B,D}:0.248993598435;HNF4A_NR2F1,2:0.243202687338;HIC1:0.238801109607;RXR{A,B,G}:0.224182092624;FOXQ1:0.210983816183;BACH2:0.210388473341;NKX3-2:0.181857338623;TEF:0.168046846764;RREB1:0.150756651072;NFE2L1:0.143907976445;ZBTB6:0.130009508054;GFI1:0.123652467987;POU1F1:0.115243450068;JUN:0.100462811664;MEF2{A,B,C,D}:0.0942095242712;NFE2:0.089357259469;SOX{8,9,10}:0.077400576429;NFKB1_REL_RELA:0.0673892766753;STAT2,4,6:0.0655167613825;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0496869900478;GFI1B:0.0272761378247;HMX1:0.0222783859546;AR:-0.0248834311451;ATF6:-0.0249085060182;POU5F1:-0.034841929848;E2F1..5:-0.0361745641424;REST:-0.0616900272637;PAX5:-0.0689250283288;ZIC1..3:-0.0807824433357;PAX6:-0.0922335177049;PRRX1,2:-0.109760781318;GTF2I:-0.110475963698;SPZ1:-0.115400065616;NFE2L2:-0.121705069678;POU3F1..4:-0.124120983167;MAZ:-0.125988851418;TAL1_TCF{3,4,12}:-0.131632170497;MAFB:-0.133091729043;HBP1_HMGB_SSRP1_UBTF:-0.137321536952;T:-0.152590236838;MTF1:-0.152798160229;GATA6:-0.165990519474;CEBPA,B_DDIT3:-0.178167952239;SMAD1..7,9:-0.179056817331;HLF:-0.204067669469;ALX4:-0.226865292968;NANOG:-0.228190712703;PAX1,9:-0.228916010948;ATF2:-0.23108813945;NKX2-2,8:-0.241787495652;UFEwm:-0.244734445441;MED-1{core}:-0.257760094836;TFDP1:-0.260215279058;CUX2:-0.282230149914;CDC5L:-0.28647629455;EP300:-0.296447014195;FOXL1:-0.297339211522;ETS1,2:-0.310597273399;NR1H4:-0.316908997134;PITX1..3:-0.334890361521;OCT4_SOX2{dimer}:-0.341391092288;RFX1:-0.369561770689;KLF4:-0.380066747166;MYB:-0.380527026831;FOX{F1,F2,J1}:-0.394535972416;MTE{core}:-0.397618701118;ZFP161:-0.402753219692;SRF:-0.407261418957;ZNF143:-0.416007569892;SPIB:-0.476592375975;ARID5B:-0.494624566137;HOX{A4,D4}:-0.49641854433;NFIL3:-0.513879151754;SOX2:-0.529124863849;SREBF1,2:-0.531470536525;PAX2:-0.535732369276;SPI1:-0.537343393416;HOX{A6,A7,B6,B7}:-0.539296517638;NKX2-1,4:-0.557766789578;SOX17:-0.573900962679;NHLH1,2:-0.577071307063;ATF4:-0.584322363582;HES1:-0.585327428562;RUNX1..3:-0.591091827942;FOXM1:-0.600721353625;ALX1:-0.602309371492;PAX8:-0.61786177339;MYBL2:-0.623135354463;DBP:-0.629951444116;IRF7:-0.661616435366;IRF1,2:-0.672355566061;ZNF238:-0.676647440851;EGR1..3:-0.681462186649;HOXA9_MEIS1:-0.691779940586;ATF5_CREB3:-0.708325567566;ELK1,4_GABP{A,B1}:-0.722364204021;FOXA2:-0.736271457154;NKX3-1:-0.760298709971;BREu{core}:-0.760811187077;RFX2..5_RFXANK_RFXAP:-0.775284143236;NRF1:-0.783235617249;PRDM1:-0.792674722852;PATZ1:-0.817733178116;PDX1:-0.841662306327;IKZF2:-0.846781281079;POU6F1:-0.848994285686;XBP1:-0.854369499383;PAX3,7:-0.877276631786;TOPORS:-0.899727436326;BPTF:-0.95414679739;FOX{I1,J2}:-0.958279794798;NFATC1..3:-0.968748360561;TGIF1:-0.990697586586;FOXO1,3,4:-0.997609070764;FOXN1:-1.0032168693;ZNF384:-1.01110983379;HIF1A:-1.02274254409;CREB1:-1.02791665747;MYFfamily:-1.03199956138;ELF1,2,4:-1.03938976263;SOX5:-1.05343833829;NFIX:-1.06534989883;FOXP3:-1.06637684403;GCM1,2:-1.07578558924;AIRE:-1.08323313925;MZF1:-1.09099875241;FOXP1:-1.09303790377;YY1:-1.12849558033;EN1,2:-1.1302008805;CDX1,2,4:-1.15703271234;DMAP1_NCOR{1,2}_SMARC:-1.15736952728;FOX{D1,D2}:-1.16466513056;NANOG{mouse}:-1.19265007343;PAX4:-1.20838665814;EVI1:-1.25712751968;HSF1,2:-1.31214427497;FOXD3:-1.33432686122;RBPJ:-1.34907886254;NKX6-1,2:-1.35625978395;STAT1,3:-1.44801678282;ZBTB16:-1.48413440778;HMGA1,2:-1.56096900785;AHR_ARNT_ARNT2:-1.61552802761;TLX2:-1.69105499216;GATA4:-1.77516324022 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11595-120H2;search_select_hide=table117:FF:11595-120H2 | |||
}} | }} | ||
Latest revision as of 18:10, 4 June 2020
| Name: | Renal Proximal Tubular Epithelial Cell, donor2 |
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| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12087 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12087
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12087
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.801 |
| 10 | 10 | 0.484 |
| 100 | 100 | 0.477 |
| 101 | 101 | 0.0169 |
| 102 | 102 | 0.476 |
| 103 | 103 | 0.352 |
| 104 | 104 | 0.539 |
| 105 | 105 | 0.109 |
| 106 | 106 | 0.0169 |
| 107 | 107 | 0.0252 |
| 108 | 108 | 0.347 |
| 109 | 109 | 0.0541 |
| 11 | 11 | 0.175 |
| 110 | 110 | 0.388 |
| 111 | 111 | 0.954 |
| 112 | 112 | 0.971 |
| 113 | 113 | 0.167 |
| 114 | 114 | 0.605 |
| 115 | 115 | 0.669 |
| 116 | 116 | 0.812 |
| 117 | 117 | 0.687 |
| 118 | 118 | 0.342 |
| 119 | 119 | 0.195 |
| 12 | 12 | 0.59 |
| 120 | 120 | 0.546 |
| 121 | 121 | 0.777 |
| 122 | 122 | 0.0741 |
| 123 | 123 | 0.134 |
| 124 | 124 | 0.218 |
| 125 | 125 | 0.917 |
| 126 | 126 | 0.478 |
| 127 | 127 | 0.154 |
| 128 | 128 | 0.189 |
| 129 | 129 | 0.0212 |
| 13 | 13 | 0.19 |
| 130 | 130 | 0.521 |
| 131 | 131 | 0.173 |
| 132 | 132 | 0.119 |
| 133 | 133 | 0.0994 |
| 134 | 134 | 0.239 |
| 135 | 135 | 0.502 |
| 136 | 136 | 0.289 |
| 137 | 137 | 0.142 |
| 138 | 138 | 0.621 |
| 139 | 139 | 0.881 |
| 14 | 14 | 0.444 |
| 140 | 140 | 0.793 |
| 141 | 141 | 0.817 |
| 142 | 142 | 0.469 |
| 143 | 143 | 0.74 |
| 144 | 144 | 0.712 |
| 145 | 145 | 0.359 |
| 146 | 146 | 0.0347 |
| 147 | 147 | 0.272 |
| 148 | 148 | 0.296 |
| 149 | 149 | 0.164 |
| 15 | 15 | 0.476 |
| 150 | 150 | 0.292 |
| 151 | 151 | 0.406 |
| 152 | 152 | 0.0565 |
| 153 | 153 | 0.675 |
| 154 | 154 | 0.329 |
| 155 | 155 | 0.827 |
| 156 | 156 | 0.0558 |
| 157 | 157 | 0.187 |
| 158 | 158 | 0.832 |
| 159 | 159 | 0.98 |
| 16 | 16 | 0.154 |
| 160 | 160 | 0.123 |
| 161 | 161 | 0.599 |
| 162 | 162 | 0.0574 |
| 163 | 163 | 0.295 |
| 164 | 164 | 0.692 |
| 165 | 165 | 0.491 |
| 166 | 166 | 0.664 |
| 167 | 167 | 0.45 |
| 168 | 168 | 0.505 |
| 169 | 169 | 0.133 |
| 17 | 17 | 0.345 |
| 18 | 18 | 0.273 |
| 19 | 19 | 0.446 |
| 2 | 2 | 0.134 |
| 20 | 20 | 0.895 |
| 21 | 21 | 0.445 |
| 22 | 22 | 0.245 |
| 23 | 23 | 0.0985 |
| 24 | 24 | 0.974 |
| 25 | 25 | 0.971 |
| 26 | 26 | 0.134 |
| 27 | 27 | 0.234 |
| 28 | 28 | 0.701 |
| 29 | 29 | 0.857 |
| 3 | 3 | 0.832 |
| 30 | 30 | 0.08 |
| 31 | 31 | 0.462 |
| 32 | 32 | 0.924 |
| 33 | 33 | 0.142 |
| 34 | 34 | 0.427 |
| 35 | 35 | 0.259 |
| 36 | 36 | 0.952 |
| 37 | 37 | 0.544 |
| 38 | 38 | 0.192 |
| 39 | 39 | 0.162 |
| 4 | 4 | 0.0761 |
| 40 | 40 | 0.00418 |
| 41 | 41 | 0.641 |
| 42 | 42 | 0.831 |
| 43 | 43 | 0.448 |
| 44 | 44 | 0.28 |
| 45 | 45 | 0.201 |
| 46 | 46 | 0.484 |
| 47 | 47 | 0.74 |
| 48 | 48 | 0.387 |
| 49 | 49 | 0.66 |
| 5 | 5 | 0.815 |
| 50 | 50 | 0.272 |
| 51 | 51 | 0.557 |
| 52 | 52 | 0.259 |
| 53 | 53 | 0.725 |
| 54 | 54 | 0.457 |
| 55 | 55 | 0.632 |
| 56 | 56 | 0.316 |
| 57 | 57 | 0.402 |
| 58 | 58 | 0.84 |
| 59 | 59 | 0.06 |
| 6 | 6 | 0.13 |
| 60 | 60 | 0.182 |
| 61 | 61 | 0.553 |
| 62 | 62 | 0.912 |
| 63 | 63 | 0.173 |
| 64 | 64 | 0.192 |
| 65 | 65 | 0.0536 |
| 66 | 66 | 0.2 |
| 67 | 67 | 0.899 |
| 68 | 68 | 0.742 |
| 69 | 69 | 0.0504 |
| 7 | 7 | 0.475 |
| 70 | 70 | 0.98 |
| 71 | 71 | 0.917 |
| 72 | 72 | 0.846 |
| 73 | 73 | 0.0765 |
| 74 | 74 | 0.291 |
| 75 | 75 | 0.974 |
| 76 | 76 | 0.114 |
| 77 | 77 | 0.00869 |
| 78 | 78 | 0.478 |
| 79 | 79 | 0.941 |
| 8 | 8 | 0.25 |
| 80 | 80 | 0.224 |
| 81 | 81 | 0.566 |
| 82 | 82 | 0.986 |
| 83 | 83 | 0.488 |
| 84 | 84 | 0.812 |
| 85 | 85 | 0.499 |
| 86 | 86 | 0.808 |
| 87 | 87 | 0.0369 |
| 88 | 88 | 0.604 |
| 89 | 89 | 0.103 |
| 9 | 9 | 0.615 |
| 90 | 90 | 0.0764 |
| 91 | 91 | 0.835 |
| 92 | 92 | 0.56 |
| 93 | 93 | 0.726 |
| 94 | 94 | 0.946 |
| 95 | 95 | 0.169 |
| 96 | 96 | 0.555 |
| 97 | 97 | 0.843 |
| 98 | 98 | 0.511 |
| 99 | 99 | 0.00724 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12087
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000155 human renal proximal tubular epithelial cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002078 (meso-epithelial cell)
0000255 (eukaryotic cell)
0000239 (brush border epithelial cell)
1000615 (kidney cortex tubule cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
0002681 (kidney cortical cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
0002584 (renal cortical epithelial cell)
1000494 (nephron tubule epithelial cell)
0002306 (epithelial cell of proximal tubule)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0001851 (cortex)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0000353 (parenchyma)
0005177 (trunk region element)
0005172 (abdomen element)
0006853 (renal cortex tubule)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0007685 (region of nephron tubule)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0004134 (proximal tubule)
0001225 (cortex of kidney)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0008987 (renal parenchyma)
0007684 (uriniferous tubule)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)
0000155 (human renal proximal tubular epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
