FFCP PHASE1:Hg19::chr1:209826486..209826491,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:209826486..209826491,- to FFCP PHASE1:Hg19::chr1:209826486..209826491,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr1:209826486..209826491,- | |||
|coexpression_cluster_id=C2562 | |||
|description=CAGE_peak_at_chr1:209826486..209826491,- | |||
|id=chr1:209826486..209826491,- | |||
|ontology_enrichment_celltype=CL:0000066!1.22e-35!254;CL:0002076!9.78e-23!43;CL:0002368!4.25e-16!13;CL:0000223!1.13e-15!59;CL:0002159!5.97e-14!13;CL:0002202!8.74e-13!9;CL:0002632!8.74e-13!9;CL:0000063!8.92e-11!578;CL:0002077!2.74e-09!33;CL:0000244!3.58e-09!4;CL:0000731!3.58e-09!4;CL:0002251!1.57e-08!21;CL:0002621!2.78e-07!3;CL:0002166!2.90e-07!3;CL:0000068!7.66e-07!3;CL:0000069!7.66e-07!3;CL:0000239!7.66e-07!3;CL:1000615!7.66e-07!3;CL:0002306!7.66e-07!3;CL:0000307!7.66e-07!3;CL:0000377!7.66e-07!3;CL:0002328!9.09e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000244;8.49e-24;4!CL:0000731;8.49e-24;4!CL:0002368;7.02e-20;13!CL:0002159;3.21e-19;14!CL:0002076;1.17e-18;42!CL:0002621;2.37e-18;3!CL:0002166;2.74e-18;3!CL:0000307;3.25e-17;3!CL:0000240;1.89e-15;6!CL:0000311;1.89e-15;6!CL:0000079;1.89e-15;6!CL:0000237;1.89e-15;6!CL:0002202;3.66e-15;9!CL:0002632;3.66e-15;9!CL:0000312;6.55e-11;5!CL:0002251;1.15e-09;20!CL:0002077;1.72e-08;34!CL:0000239;1.76e-08;3!CL:1000615;1.76e-08;3!CL:0002306;1.76e-08;3!CL:0002328;2.91e-08;3!CL:0002541;4.51e-08;3!CL:0000349;4.59e-07;19!CL:0002336;5.85e-07;1!CL:0002261;5.85e-07;1!CL:0002170;5.85e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,8.26e-24,4;CL:0000731,8.26e-24,4;CL:0002076,6.71e-23,42;CL:0002368,8.75e-20,13;CL:0002159,4.30e-19,14;CL:0002621,2.75e-18,3;CL:0002166,3.08e-18,3;CL:0000068,5.22e-17,3;CL:0000069,5.22e-17,3;CL:0000307,5.22e-17,3;CL:0000377,5.22e-17,3;CL:0000066,1.13e-16,253;CL:0000223,8.74e-16,58;CL:0000240,2.08e-15,6;CL:0000311,2.08e-15,6;CL:0000079,2.08e-15,6;CL:0000237,2.08e-15,6;CL:0000036,2.08e-15,6;CL:0000357,2.08e-15,6;CL:0000114,2.08e-15,6;CL:0002202,4.60e-15,9;CL:0002632,4.60e-15,9;CL:0000312,7.25e-11,5;CL:0002251,1.17e-09,20;CL:0002077,1.96e-09,34;CL:0000239,1.38e-08,3;CL:1000615,1.38e-08,3;CL:0002306,1.38e-08,3;CL:0002328,2.80e-08,3;CL:0002541,4.20e-08,3;CL:0002321,1.09e-07,250;CL:0000349,3.88e-07,19;CL:0002336,5.69e-07,1;CL:0002261,5.69e-07,1;CL:0002170,5.69e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000377;3.25e-17;3!CL:0000357;1.89e-15;6!CL:0000114;1.89e-15;6!CL:0000223;4.61e-09;58 | |||
|ontology_enrichment_disease=DOID:305!1.10e-11!106;DOID:0050687!4.50e-08!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!3.31e-13!169;UBERON:0000925!3.31e-13!169;UBERON:0006595!3.31e-13!169;UBERON:0000365!1.50e-10!5;UBERON:0005911!4.36e-09!82;UBERON:0001007!6.60e-09!155;UBERON:0001555!6.60e-09!155;UBERON:0007026!6.60e-09!155;UBERON:0005910!1.11e-08!6;UBERON:0006554!2.21e-08!44;UBERON:0001008!4.25e-08!45;UBERON:0007196!1.33e-07!14;UBERON:0001558!1.33e-07!14;UBERON:0000058!1.71e-07!26;UBERON:0004921!2.10e-07!129;UBERON:0004185!2.10e-07!129;UBERON:0001949!2.78e-07!3;UBERON:0006853!7.66e-07!3;UBERON:0007685!7.66e-07!3;UBERON:0004134!7.66e-07!3;UBERON:0004815!9.09e-07!3;UBERON:0002031!9.09e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000486;3.47e-23;12!UBERON:0003929;4.00e-20;7!UBERON:0000365;4.47e-19;5!UBERON:0001949;2.37e-18;3!UBERON:0003350;1.38e-17;8!UBERON:0005910;6.36e-16;6!UBERON:0001708;7.55e-14;4!UBERON:0008895;7.55e-14;4!UBERON:0005911;1.06e-13;36!UBERON:0005631;1.25e-13;10!UBERON:0000158;1.25e-13;10!UBERON:0000485;1.37e-12;7!UBERON:0011159;3.56e-11;5!UBERON:0000344;1.15e-09;20!UBERON:0007196;5.16e-09;15!UBERON:0001558;5.16e-09;15!UBERON:0006853;1.76e-08;3!UBERON:0007685;1.76e-08;3!UBERON:0004134;1.76e-08;3!UBERON:0004815;2.91e-08;3!UBERON:0002031;2.91e-08;3!UBERON:0003124;4.51e-08;3!UBERON:0000920;4.51e-08;3!UBERON:0000305;8.80e-08;7!UBERON:0003126;1.16e-07;7!UBERON:0001005;1.16e-07;7!UBERON:0004923;1.24e-07;55!UBERON:0003729;2.50e-07;13!UBERON:0001828;3.65e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000365,4.37e-19,5;UBERON:0001949,2.75e-18,3;UBERON:0003350,1.45e-17,8;UBERON:0005910,6.25e-16,6;UBERON:0001708,8.24e-14,4;UBERON:0008895,8.24e-14,4;UBERON:0011159,3.81e-11,5;UBERON:0000485,7.60e-10,9;UBERON:0005631,8.91e-10,14;UBERON:0000158,8.91e-10,14;UBERON:0000344,1.17e-09,20;UBERON:0010188,2.31e-09,6;UBERON:0002539,2.31e-09,6;UBERON:0008816,2.31e-09,6;UBERON:0007196,5.89e-09,15;UBERON:0001558,5.89e-09,15;UBERON:0006853,1.38e-08,3;UBERON:0007685,1.38e-08,3;UBERON:0004134,1.38e-08,3;UBERON:0004815,2.80e-08,3;UBERON:0002031,2.80e-08,3;UBERON:0004923,3.41e-08,66;UBERON:0000920,4.20e-08,3;UBERON:0000305,6.88e-08,7;UBERON:0005911,1.34e-07,82;UBERON:0003126,1.42e-07,7;UBERON:0001005,1.42e-07,7;UBERON:0004119,1.98e-07,160;UBERON:0000925,1.98e-07,160;UBERON:0006595,1.98e-07,160;UBERON:0003729,2.59e-07,13;UBERON:0001828,3.85e-07,8;UBERON:0004871,5.93e-07,8 | |||
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| ||
|short_description=p@chr1:209826486..209826491,- | |||
}} | }} |
Latest revision as of 03:21, 28 July 2015
Short description: | p@chr1:209826486..209826491, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:209826486..209826491, - |
Coexpression cluster: | C2562_Urothelial_Gingival_Keratinocyte_Mammary_Bronchial_Small_Mallassezderived |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
urothelium | 4.37e-19 | 5 |
gingival epithelium | 2.75e-18 | 3 |
epithelium of mucosa | 1.45e-17 | 8 |
transitional epithelium | 6.25e-16 | 6 |
jaw skeleton | 8.24e-14 | 4 |
splanchnocranium | 8.24e-14 | 4 |
primary subdivision of cranial skeletal system | 3.81e-11 | 5 |
simple columnar epithelium | 7.60e-10 | 9 |
extraembryonic membrane | 8.91e-10 | 14 |
membranous layer | 8.91e-10 | 14 |
mucosa | 1.17e-09 | 20 |
protuberance | 2.31e-09 | 6 |
pharyngeal arch | 2.31e-09 | 6 |
embryonic head | 2.31e-09 | 6 |
tracheobronchial tree | 5.89e-09 | 15 |
lower respiratory tract | 5.89e-09 | 15 |
renal cortex tubule | 1.38e-08 | 3 |
region of nephron tubule | 1.38e-08 | 3 |
proximal tubule | 1.38e-08 | 3 |
lower respiratory tract epithelium | 2.80e-08 | 3 |
epithelium of bronchus | 2.80e-08 | 3 |
organ component layer | 3.41e-08 | 66 |
egg chorion | 4.20e-08 | 3 |
amnion | 6.88e-08 | 7 |
endo-epithelium | 1.34e-07 | 82 |
trachea | 1.42e-07 | 7 |
respiratory airway | 1.42e-07 | 7 |
endoderm-derived structure | 1.98e-07 | 160 |
endoderm | 1.98e-07 | 160 |
presumptive endoderm | 1.98e-07 | 160 |
mouth mucosa | 2.59e-07 | 13 |
gingiva | 3.85e-07 | 8 |
somatic layer of lateral plate mesoderm | 5.93e-07 | 8 |