FFCP PHASE1:Hg19::chr17:46675586..46675600,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3216 | |EntrezGene=3216 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5117 | |HGNC=5117 | ||
|TSSclassifier=strong | |||
|UniProt=P17509 | |UniProt=P17509 | ||
|association_with_transcript=480bp_to_uc002int.1_5end | |association_with_transcript=480bp_to_uc002int.1_5end | ||
|cluster_id=chr17:46675586..46675600,- | |||
|coexpression_cluster_id=C3645 | |coexpression_cluster_id=C3645 | ||
|description=CAGE_peak_6_at_HOXB6_5end | |description=CAGE_peak_6_at_HOXB6_5end | ||
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|ontology_enrichment_celltype=CL:1000497!3.03e-15!18;CL:0002518!3.03e-15!18;CL:1000449!3.38e-14!16;CL:0002681!1.56e-12!13;CL:0002584!1.56e-12!13;CL:0000222!9.50e-12!119;CL:1000507!1.07e-10!12;CL:1000494!1.07e-10!12;CL:0002078!9.45e-09!44;CL:0000115!9.03e-08!35;CL:0000055!1.68e-07!180;CL:1000612!2.15e-07!7;CL:1000746!2.15e-07!7;CL:0000183!2.24e-07!59 | |ontology_enrichment_celltype=CL:1000497!3.03e-15!18;CL:0002518!3.03e-15!18;CL:1000449!3.38e-14!16;CL:0002681!1.56e-12!13;CL:0002584!1.56e-12!13;CL:0000222!9.50e-12!119;CL:1000507!1.07e-10!12;CL:1000494!1.07e-10!12;CL:0002078!9.45e-09!44;CL:0000115!9.03e-08!35;CL:0000055!1.68e-07!180;CL:1000612!2.15e-07!7;CL:1000746!2.15e-07!7;CL:0000183!2.24e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:1000497;2.22e-18;17!CL:0002518;2.22e-18;17!CL:1000449;2.73e-18;15!CL:0002681;7.08e-17;12!CL:0002584;7.08e-17;12!CL:1000746;6.55e-11;7!CL:1000612;6.55e-11;7!CL:0002188;6.57e-11;5!CL:1000507;9.97e-10;10!CL:1000494;9.97e-10;10!CL:0000239;9.25e-08;3!CL:1000615;9.25e-08;3!CL:0002306;9.25e-08;3!CL:0002564;2.25e-07;3!CL:0002521;2.84e-07;3 | |ontology_enrichment_celltype_v019=CL:1000497;2.22e-18;17!CL:0002518;2.22e-18;17!CL:1000449;2.73e-18;15!CL:0002681;7.08e-17;12!CL:0002584;7.08e-17;12!CL:1000746;6.55e-11;7!CL:1000612;6.55e-11;7!CL:0002188;6.57e-11;5!CL:1000507;9.97e-10;10!CL:1000494;9.97e-10;10!CL:0000239;9.25e-08;3!CL:1000615;9.25e-08;3!CL:0002306;9.25e-08;3!CL:0002564;2.25e-07;3!CL:0002521;2.84e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:1000497,1.95e-18,17;CL:0002518,1.95e-18,17;CL:1000449,2.13e-18,15;CL:0002681,6.29e-17,12;CL:0002584,6.29e-17,12;CL:0002188,4.07e-11,5;CL:1000746,4.74e-11,7;CL:1000612,4.74e-11,7;CL:1000507,1.11e-09,10;CL:1000494,1.11e-09,10;CL:0002078,8.96e-08,45;CL:0000239,9.56e-08,3;CL:1000615,9.56e-08,3;CL:0002306,9.56e-08,3;CL:0002521,2.25e-07,3;CL:0002564,2.50e-07,3;CL:0002559,4.59e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0006241;9.41e-07;3!UBERON:0003057;9.41e-07;3 | |ontology_enrichment_development_v019=UBERON:0006241;9.41e-07;3!UBERON:0003057;9.41e-07;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!1.07e-19!32;UBERON:0002100!3.74e-18!216;UBERON:0002113!5.99e-17!27;UBERON:0003918!5.99e-17!27;UBERON:0005095!5.99e-17!27;UBERON:0007687!5.99e-17!27;UBERON:0000080!4.95e-16!18;UBERON:0002120!4.95e-16!18;UBERON:0004875!4.95e-16!18;UBERON:0005721!4.95e-16!18;UBERON:0005754!4.95e-16!18;UBERON:0007297!4.95e-16!18;UBERON:0003887!1.53e-15!21;UBERON:0006555!4.97e-15!17;UBERON:0005103!4.97e-15!17;UBERON:0000083!4.97e-15!17;UBERON:0009201!4.97e-15!17;UBERON:0004819!4.97e-15!17;UBERON:0006553!4.97e-15!17;UBERON:0003074!4.97e-15!17;UBERON:0003060!4.97e-15!17;UBERON:0000058!6.75e-15!26;UBERON:0004211!3.38e-14!16;UBERON:0001285!3.38e-14!16;UBERON:0007684!3.38e-14!16;UBERON:0003220!3.38e-14!16;UBERON:0004208!3.38e-14!16;UBERON:0001008!3.99e-14!45;UBERON:0005256!6.90e-14!143;UBERON:0004876!1.13e-13!20;UBERON:0006554!1.19e-13!44;UBERON:0000353!2.37e-13!17;UBERON:0002417!1.42e-12!61;UBERON:0000916!1.42e-12!61;UBERON:0001225!1.56e-12!13;UBERON:0008987!1.56e-12!13;UBERON:0003914!5.95e-12!118;UBERON:0009569!9.21e-12!113;UBERON:0009773!1.07e-10!12;UBERON:0001231!1.07e-10!12;UBERON:0004810!1.07e-10!12;UBERON:0005172!1.54e-10!55;UBERON:0005173!1.54e-10!55;UBERON:0001851!2.19e-10!16;UBERON:0005177!3.48e-10!107;UBERON:0000055!7.24e-10!69;UBERON:0003104!8.42e-10!238;UBERON:0009142!8.42e-10!238;UBERON:0003064!1.46e-09!37;UBERON:0003886!1.61e-09!63;UBERON:0003103!2.68e-09!69;UBERON:0004290!2.21e-08!70;UBERON:0000486!2.28e-08!82;UBERON:0002049!4.00e-08!79;UBERON:0007798!4.00e-08!79;UBERON:0000926!5.74e-08!448;UBERON:0004120!5.74e-08!448;UBERON:0006603!5.74e-08!448;UBERON:0002553!1.93e-07!70;UBERON:0000074!2.15e-07!7;UBERON:0001229!2.15e-07!7;UBERON:0001230!2.15e-07!7;UBERON:0005749!2.15e-07!7;UBERON:0004199!2.15e-07!7;UBERON:0004209!2.15e-07!7;UBERON:0004198!2.15e-07!7;UBERON:0001473!3.97e-07!8;UBERON:0004536!3.97e-07!8;UBERON:0006558!3.97e-07!8;UBERON:0000475!5.13e-07!365;UBERON:0000464!5.75e-07!104;UBERON:0000466!6.07e-07!126 | |ontology_enrichment_uberon=UBERON:0000489!1.07e-19!32;UBERON:0002100!3.74e-18!216;UBERON:0002113!5.99e-17!27;UBERON:0003918!5.99e-17!27;UBERON:0005095!5.99e-17!27;UBERON:0007687!5.99e-17!27;UBERON:0000080!4.95e-16!18;UBERON:0002120!4.95e-16!18;UBERON:0004875!4.95e-16!18;UBERON:0005721!4.95e-16!18;UBERON:0005754!4.95e-16!18;UBERON:0007297!4.95e-16!18;UBERON:0003887!1.53e-15!21;UBERON:0006555!4.97e-15!17;UBERON:0005103!4.97e-15!17;UBERON:0000083!4.97e-15!17;UBERON:0009201!4.97e-15!17;UBERON:0004819!4.97e-15!17;UBERON:0006553!4.97e-15!17;UBERON:0003074!4.97e-15!17;UBERON:0003060!4.97e-15!17;UBERON:0000058!6.75e-15!26;UBERON:0004211!3.38e-14!16;UBERON:0001285!3.38e-14!16;UBERON:0007684!3.38e-14!16;UBERON:0003220!3.38e-14!16;UBERON:0004208!3.38e-14!16;UBERON:0001008!3.99e-14!45;UBERON:0005256!6.90e-14!143;UBERON:0004876!1.13e-13!20;UBERON:0006554!1.19e-13!44;UBERON:0000353!2.37e-13!17;UBERON:0002417!1.42e-12!61;UBERON:0000916!1.42e-12!61;UBERON:0001225!1.56e-12!13;UBERON:0008987!1.56e-12!13;UBERON:0003914!5.95e-12!118;UBERON:0009569!9.21e-12!113;UBERON:0009773!1.07e-10!12;UBERON:0001231!1.07e-10!12;UBERON:0004810!1.07e-10!12;UBERON:0005172!1.54e-10!55;UBERON:0005173!1.54e-10!55;UBERON:0001851!2.19e-10!16;UBERON:0005177!3.48e-10!107;UBERON:0000055!7.24e-10!69;UBERON:0003104!8.42e-10!238;UBERON:0009142!8.42e-10!238;UBERON:0003064!1.46e-09!37;UBERON:0003886!1.61e-09!63;UBERON:0003103!2.68e-09!69;UBERON:0004290!2.21e-08!70;UBERON:0000486!2.28e-08!82;UBERON:0002049!4.00e-08!79;UBERON:0007798!4.00e-08!79;UBERON:0000926!5.74e-08!448;UBERON:0004120!5.74e-08!448;UBERON:0006603!5.74e-08!448;UBERON:0002553!1.93e-07!70;UBERON:0000074!2.15e-07!7;UBERON:0001229!2.15e-07!7;UBERON:0001230!2.15e-07!7;UBERON:0005749!2.15e-07!7;UBERON:0004199!2.15e-07!7;UBERON:0004209!2.15e-07!7;UBERON:0004198!2.15e-07!7;UBERON:0001473!3.97e-07!8;UBERON:0004536!3.97e-07!8;UBERON:0006558!3.97e-07!8;UBERON:0000475!5.13e-07!365;UBERON:0000464!5.75e-07!104;UBERON:0000466!6.07e-07!126 | ||
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| ||
|short_description=p6@HOXB6 | |short_description=p6@HOXB6 | ||
}} | }} |
Latest revision as of 07:22, 25 September 2015
Short description: | p6@HOXB6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_HOXB6_5end |
Coexpression cluster: | C3645_ductus_seminal_alveolar_endometrial_Smooth_small_nonsmall |
Association with transcript: | 480bp_to_uc002int.1_5end |
EntrezGene: | HOXB6 |
HGNC: | 5117 |
UniProt: | P17509 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 1.95e-18 | 17 |
kidney epithelial cell | 1.95e-18 | 17 |
epithelial cell of nephron | 2.13e-18 | 15 |
kidney cortical cell | 6.29e-17 | 12 |
renal cortical epithelial cell | 6.29e-17 | 12 |
glomerular endothelial cell | 4.07e-11 | 5 |
glomerular cell | 4.74e-11 | 7 |
kidney corpuscule cell | 4.74e-11 | 7 |
kidney tubule cell | 1.11e-09 | 10 |
nephron tubule epithelial cell | 1.11e-09 | 10 |
meso-epithelial cell | 8.96e-08 | 45 |
brush border epithelial cell | 9.56e-08 | 3 |
kidney cortex tubule cell | 9.56e-08 | 3 |
epithelial cell of proximal tubule | 9.56e-08 | 3 |
subcutaneous fat cell | 2.25e-07 | 3 |
nucleus pulposus cell of intervertebral disc | 2.50e-07 | 3 |
hair follicle cell | 4.59e-07 | 5 |